chrc1 (chrc1)


Basic Information

Item Value
gene id chrc1
gene name chrc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58918319 ~ 58922019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165203.1
AGAAATTTCCTTATTCATGTCAAAATGTCTGGAGACAACGTTAATCATGCATCTAACAGCAAAGGCATCTCTCTTCCAATGACTCGCGTGAAAATGATCATGAAAAGTTCTCCCGACGTCTCAAGCATCAACCAAGAGGCTCTTCTCATCACCACCAAAGCAACAGAACTGTTCGTTCAGTACTTGGCTCTGTCCTCGTTCAACAATGGATCAGGGAAAGACAATAAGACACTCTTGTACAGTGATCTGGCCAATACTGTTGAGGGAACAGAGACTTTTCAGTTTCTCACAGATATCCTACCAAAGAAGATCTTCGCTCGAGATTACCTGAAGCTCATAGAGGAAAATCCAATTGAGGAAGCAGACAATTGAAAAGACATGCAACCCTTCAAGCAATAGTGGTTGCTAGAATGGAGTCTGAAGCTTTTTTTCTCCAGCTCATTCCATACTACTTCCAGGCGATGCTATTATGTAGGCCAACACCTTCCCTGAGACGTACTAGAGTATATTATGTTTACTACCATTAGTTGCCCAGTCTTCCAGATAATGGTCATTCAGTTTGGGGTCAGAAAGAATCAGTATGTGAGTTGACTACAGATAAACCATTAAAATCATAATCATATGTTGACCATGATACCACCCCCATATTCCCCGCTACAGCAATCACCTGCTGCCGAAGAGAAACATCTGTGCTTCCTCTGGTTTTGATACCACTCAGTGCAAATAGTGCAAGCTTTTATCTGTTTTGGGCATTATTTTTCTAAACAAGATCTTGAAGCAAAGGTTGAACAAATCAGgtgctttaaaaatatatatatattccatacATATATTCCAGTTCTCAGGTCAAACCAAATTGACTCATTGTGTCCTTTTTATAAAGAGGAACCCCAATGCACAGTCTTTGCTAATGCAGACTATCTACTTTGACTTTTTGTATTATATACCTTTCATTCATAAACAATGTTTAACTTATCTTTAGAGATCTACACATGCAAACTGATTCCTTTTAGCAACGTTACTGAGTATAAAAGACACTTTAGACTTTTGCTGTGTTTAATGTGATATGTACCATATTACTCAGTCAAAACCCATTGGTAGTTTCAGTACTGGGTGGTTGCGGGCAGCACTAATTTAATATTGAATCTCTAATTTCATTTTTTAGTAACAGCTCCTCTCAGATTGTAATGAATATACGCAAGGACAGGCATTGCAATATTTAGGTTTATGTGAAAAAAATAAATCAGACTTAATGTTACATTTATTAAATCAGTCTAAATATGCCACTGTGTGTGGTTGAACTATAAAGCAGGCTACTGTAACTGCTAGCGTGTATGGTCTCAAAAATGGAAAGAATGCACTGAACTTGAAccactgtattttctaCAAGTGTTTGTAACAGCAATTTCATCCCCTCTAACGATTGAGACTTGccttttgtatgtttttgtgttccaTAGTTTAgttaatgaaaataaaatattcaTGCTCTACAGATTGTCATTCCCTATTTGTGTTCTATTGTTTTCACCTTGTTGCAACAAAGCATTTACATAAATGTTACAATTTTATACCACACTGTATGAGTGTCACAGTTTTACTTCAATAAATAACATCTCTTTCTGG

Function

NR:

description
Chromatin accessibility complex protein 1

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0008623 CHRAC cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11656 CHRAC1, CHRAC15; chromatin accessibility complex protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165203.1 True 1626 mRNA 0.37 4 58918319 58922019

Neighbor

gene id symbol gene type direction distance location
LOC110496619 catsper4 coding upstream 2920 58906505 ~ 58915399 (+)
LOC110496618 LOC106588914 coding upstream 44627 58864013 ~ 58873692 (+)
nanos2 LOC106588910 coding upstream 94390 58823202 ~ 58823929 (+)
LOC110496610 aunip coding upstream 178752 58737349 ~ 58739567 (+)
LOC118941194 NA coding upstream 532355 58379624 ~ 58386065 (+)
trnaa-ugc-140 NA coding downstream 23242 58945261 ~ 58945334 (+)
dlx5a dlx5 coding downstream 35118 58957121 ~ 58959671 (+)
sem1 shfm1 coding downstream 102900 59024919 ~ 59035388 (+)
LOC110496872 slc25a13 coding downstream 136507 59058526 ~ 59156295 (+)
pdk4 LOC106588934 coding downstream 361641 59283660 ~ 59298606 (+)
G1567522 NA non-coding upstream 15828 58890403 ~ 58902491 (+)
G1567516 NA non-coding upstream 40859 58877027 ~ 58877460 (+)
G1567515 NA non-coding upstream 48309 58869481 ~ 58870010 (+)
G1567475 NA non-coding upstream 96763 58821236 ~ 58821556 (+)
G1567397 NA non-coding upstream 176474 58739746 ~ 58741845 (+)
G1567505 LOC106588919 non-coding downstream 2282 58924301 ~ 58925552 (+)
G1567503 NA non-coding downstream 7554 58929573 ~ 58930215 (+)
G1567543 NA non-coding downstream 39223 58961242 ~ 58976415 (+)
G1567555 NA non-coding downstream 66029 58988048 ~ 58988650 (+)
G1567653 NA non-coding downstream 267434 59189453 ~ 59189762 (+)
G1566445 LOC106588893 other upstream 541313 58364256 ~ 58377006 (+)
G1566224 tbc1d5 other upstream 971556 57941097 ~ 57946763 (+)
LOC110496592 LOC106588883 other upstream 997673 57893854 ~ 57935297 (+)
LOC110496591 LOC106588881 other upstream 1055273 57851179 ~ 57870361 (+)
G1567716 asb4 other downstream 387965 59309984 ~ 59312723 (+)
G1567804 col1a2 other downstream 579154 59501173 ~ 59585317 (+)
LOC110496636 bet1 other downstream 722694 59644659 ~ 59647881 (+)

Expression


Co-expression Network