si:ch211-57n23.1 (LOC106588919)


Basic Information

Item Value
gene id si:ch211-57n23.1
gene name LOC106588919
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58922028 ~ 58926488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953394.1
aatgctctgacaCCAGGCTGTTCAAACcgctgagagaaagagggagagagcgagtcaTACTTTCCAAAAACTCACCATGTGTAATTTGACTTCACTTGCACCAGCGACGGACTAAACTGCGTACGTCTCCGGAATTTTCTTCTATAAGGCCCAGTAGCCTTGCTTGCCAGGCTAATAGACACACTGCTGGGGAACAAGACTAGTCCAGCTACATTGTGATGAAGTGGCTCCACGATGGAACAACTAGCTGGGCTTGGCTCTGCCTCTCCTGTTGCCTCCTGAGTGCCTGGTGCCCGGTGGGGGCAGAGGTGGGACCCACGCCCGACCCTGAGTCAGGGGAGCCCATGCAGGGAGACTGGGAGTGGGGCTCCGGTTCCTTCAACCTTCAGGATCTACTCCACAGCTTCCCCGCCGACAGCCCATTTGTGACAGAGACTCCGGGGAATCCTGTCAACTGCTCCCAGCGCTTCTGGCTGCCCTCTGCCTCCCCAGTCTGCTGGGACGACATCGCCGGGCCGGAGGAGTTTGAGCAGTCTCGTCTGCTGGTGCTCCAGAATAGGGCGGCCCTGCAGGCGGTGTCCCTGGCCAGCGAGGTGGTGGTAGAAGGGGGAACTTCAGCCTCGTTTAAACAGCAGGCCTTGGAGGACTTGCAGGTGGTGAGGGCGGACTACCTGAACGTGACAGAGACGACAGAGACCATGCAGAAGGTGTTCCTCAcactggaggagaagaggaaggaggggactgagcactggACATTCTcaagTATAAAGGAGCACATTGCCAAAACGAAGGACTCCATCAACGGAAAAGACAACGTGGCAGCCCTCCTAGAGAAACAGTTCTCTAGCCTAGAGAAGTCTTTACACGTCATGCAACTCCGACTTGACAAACTAATGGCACAGTGAATGTGTTCTTCAGGATATTTTTTTGAATGAACTGTACCATCATGTAATATATCCCACTAACAATGCATGCAAACTCAGGTTAAAAAACCCTTTACAAAACATGAGGTGCACTTTCTTTGTATATGAACTAGGTATTTTATTCTTCCGTAGTCACATTCCTATCTGAAACCCAAACTGCATGCAAAGCCTACAGCATCAGGGAGATTTTGAtggaaataaaatatttttatacTCAGCATGCA

Function

NR:

description
uncharacterized protein LOC110496621

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953394.1 True 1150 mRNA 0.51 3 58922028 58926488

Neighbor

gene id symbol gene type direction distance location
LOC110496620 LOC106588918 coding downstream 3978 58915161 ~ 58918050 (-)
LOC110496617 LOC106588916 coding downstream 15857 58877846 ~ 58906171 (-)
LOC110496616 lrrc14b coding downstream 45137 58873695 ~ 58876891 (-)
ptdss1b LOC106588913 coding downstream 58286 58854281 ~ 58863742 (-)
LOC110496613 LOC106588909 coding downstream 69487 58824211 ~ 58852541 (-)
ago2 LOC106570475 coding upstream 7780 58934268 ~ 58952492 (-)
dlx6a dlx6 coding upstream 36456 58962944 ~ 58966131 (-)
LOC110496627 LOC106588646 coding upstream 133855 59060343 ~ 59060911 (-)
LOC118940999 NA coding upstream 237086 59163574 ~ 59281264 (-)
asb4 asb4 coding upstream 367749 59294237 ~ 59320224 (-)
G1567886 NA non-coding downstream 10178 58911489 ~ 58911850 (-)
G1567880 NA non-coding downstream 29862 58885908 ~ 58892166 (-)
G1567871 LOC106588914 non-coding downstream 49673 58870937 ~ 58873691 (-)
G1567865 NA non-coding downstream 99523 58822179 ~ 58822505 (-)
LOC110496609 cap2 non-coding downstream 179186 58739765 ~ 58789014 (-)
G1567889 NA non-coding upstream 1376 58927864 ~ 58932641 (-)
G1567913 NA non-coding upstream 51772 58978260 ~ 58978474 (-)
G1567944 shfm1 non-coding upstream 98534 59025022 ~ 59035338 (-)
G1567979 NA non-coding upstream 163521 59090009 ~ 59090699 (-)
G1568021 NA non-coding upstream 241459 59167947 ~ 59168189 (-)
G1567875 NA other downstream 52021 58869363 ~ 58870007 (-)
G1567080 NA other downstream 510899 58410499 ~ 58411129 (-)
G1566972 NA other downstream 754331 58167384 ~ 58167697 (-)
G1566923 NA other downstream 843882 58074209 ~ 58078146 (-)
G1567931 NA other upstream 78357 59004845 ~ 59074648 (-)
G1568017 NA other upstream 228540 59155028 ~ 59157044 (-)
LOC110496637 gng11 other upstream 802691 59712624 ~ 59738593 (-)
G1569198 NA other upstream 1315443 60241931 ~ 60251369 (-)
G1569258 NA other upstream 1422288 60348776 ~ 60350759 (-)

Expression


Co-expression Network