dlx5a (dlx5)


Basic Information

Item Value
gene id dlx5a
gene name dlx5
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58957121 ~ 58959671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572630.2
AGTGCGTAAGAGCGCAATTTAGGATTTAACCAGGTCTTTGCTGTGGAGCTGGCAGCAGTTCGAGAGAGCCCGTCGGCGAAAGCACACATCACACAATGCAAGTGTAGTCTTCACTCAGTCTTCATACGTCTCAGTGGAAACAGACTTCCCTTTAACGTTGCTGCTTCGCACTATGACTGGAGTATTCGACCGAAGGATTCCGAGTATCAAACCTGCCGACTTCCAGAACCCTTTTCAGCTTTCCACCACAATGCATCACCCGTCTCAGGAATCTCCTACGCTGCCCGAGTCTACGGCCACGGATTCTGGCTACTACAGCCCTGCTGGAGCAGTGCACCATGGCTATTGTTCGCCTAACTCCACCTCATATGGGAAACCGCTCAATGCCTATCAGTACCAGTACCACGGCGTAAACGGATCTGCGGGAAATTACCCTGCAAAAACATACCCAGACTACAGCGCATACACAGCCTCTGCTTACCACCAATATGCTGGAACTTATAGCAGAGTACAACCACAACCATTAAGTCCGCAAGaAAAAGAGGTAGCAGAACCTGAAGTGAGGATGGTAAACGGAAAGCCCAAGAAAATCAGAAAACCAAGAACAATCTACTCCAGTTTTCAGCTCGCCGCCCTGCAGCGGAGATTTCAGAACACACAGTACCTCGCGCTGCCTGAGAGAGCAGAGCTTGCGGCTTCGTTGGGACTCACGCAAACGCAGGTCAAAATATGGTTCCAGAACAAAAGGTCGAAACTGAAGAAAATCATGAAGAATGGCGAACTCCCACCGGAACACAGCCCGAGCTCCAGCGATCCCATGGCTTGCAACTCTCCTCATTCACCCGCCGTCTGGGACACGCAGGGCCCGTCCAGGCCTCACAGCCACCAGGCACAGAACAACAACTCCGCGGCATCAACCTTTTTGGAAAACTCCGCCTCTTGGTACTCCGCGGCTGGTTCCATGAATTCTCACCTCCAGACCCCCAACTCGATACAGCACTCTTTGGTTCTCGGATCGGGGACGTTATACTGAAACCCAGTTCAACAAATATTTCATTGTATGGGACTCGTGTTTAAAAGATTCAGAGGAATATGCAATGTATTGATGACAGTCATAGAAGAACGTGTATAATGTGTAAATGTGTGCATGTAATTTATTGCATTTTGGAAGACTAATTAAACGTTTTAAATGGACAATGGAACCCAGACACTTTCAATGGCGCCCTCCTGAATTAACACTTTAAGGCAATTGTTTTGCTGATACCCACAAATCCCTCATAATTACTGATATAGCATGTAGGCCTAGATAGGCTATTCGCACTGAATATCAAGGACTCCATAACATAACAACATAAGCCTACTTTCTGTGAGACACTTTAAATCCATGTACAGCTCAAACTCGAGTTTAATTGCCTGGACTGCCTGTGTGCCCATATTTGGTCAGTGGTGCAAAGTAGTGATTCACTTTAAATAATAATTTGGCCACACATCTATCAACAAGGAGATGGGTCTAATGACCTTGGGCTAAACAGTTAGGCTGTTTCATTTTCAACAACCACGGAATTCTCAGGGGGAGTTACCTTCAGGTATCTCAAAAGATTAGGCTAGATTTATTTCGTGTCATGTCAAGTTATTCATTTGAAAACTACAACCTGTTTTATGGTTATGTGCATATAAACATGCCCATAGTAAATAGTTTTCAGCGGATCCATAACCGACTAAACAGAACCTATATCGAAGAGATCATTGAGTGtataataattaacatttttGAAGAGTGTGTTTTGAATTACAATTGAATTTGGAATGATTGA
>TU1793432
ACCAGATCCTCCCTGCAGTGCGTAAGAGCGCAATTTAGGATTTAACCAGGTCTTTGCTGTGGAGCTGGCAGCAGTTCGAGAGAGCCCGTCGGCGAAAGCACACATCACACAATGCAAGTGTAGTCTTCACTCAGTCTTCATACGTCTCAGTGGAAACAGACTTCCCTTTAACGTTGCTGCTTCGCACTATGACTGGAGTATTCGACCGAAGGATTCCGAGTATCAAACCTGCCGACTTCCAGAACCCTTTTCAGCTTTCCACCACAATGCATCACCCGTCTCAGGAATCTCCTACGCTGCCCGAGTCTACGGCCACGGATTCTGGCTACTACAGCCCTGCTGGAGCAGTGCACCATGGCTATTGTTCGCCTAACTCCACCTCATATGGGAAACCGCTCAATGCCTATCAGTACCAGTACCACGGCGTAAACGGATCTGCGGGAAATTACCCTGCAAAAACATACCCAGACTACAGCGCATACACAGCCTCTGCTTACCACCAATATGCTGGAACTTATAGCAGAGTACAACCACAACCATTAAGTCCGCAAGaAAAAGAGGTAGCAGAACCTGAAGTGAGGATGGTAAACGGAAAGCCCAAGAAAATCAGAAAACCAAGAACAATCTACTCCAGTTTTCAGCTCGCCGCCCTGCAGCGGAGATTTCAGAACACACAGTACCTCGCGCTGCCTGAGAGAGCAGAGCTTGCGGCTTCGTTGGGACTCACGCAAACGCAGGTCAAAATATGGTTCCAGAACAAAAGGTCGAAACTGAAGAAAATCATGAAGAATGGCGAACTCCCACCGGAACACAGCCCGAGCTCCAGCGATCCCATGGCTTGCAACTCTCCTCATTCACCCGCCGTCTGGGACACGCAGGGCCCGTCCAGGCCTCACAGCCACCAGGCACAGAACAACAACTCCGCGGCATCAACCTTTTTGGAAAACTCCGCCTCTTGGTACTCCGCGGCTGGTTCCATGAATTCTCACCTCCAGACCCCCAACTCGATA

Function

symbol description
dlx5 Enables transcription cis-regulatory region binding activity. Involved in cell population proliferation and positive regulation of transcription, DNA-templated. Predicted to be located in chromatin. Implicated in split hand-foot malformation 1 and split hand-foot malformation 1 with sensorineural hearing loss.

NR:

description
homeobox protein Dlx5a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572630.2 False 1814 mRNA 0.45 3 58957137 58959671
TU1793432 True 1010 TUCP 0.52 3 58957121 58958851

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-140 NA coding upstream 11803 58945261 ~ 58945334 (+)
chrc1 chrc1 coding upstream 35118 58918319 ~ 58922019 (+)
LOC110496619 catsper4 coding upstream 41738 58906505 ~ 58915399 (+)
LOC110496618 LOC106588914 coding upstream 83445 58864013 ~ 58873692 (+)
nanos2 LOC106588910 coding upstream 133208 58823202 ~ 58823929 (+)
sem1 shfm1 coding downstream 65248 59024919 ~ 59035388 (+)
LOC110496872 slc25a13 coding downstream 98855 59058526 ~ 59156295 (+)
pdk4 LOC106588934 coding downstream 323989 59283660 ~ 59298606 (+)
sgce sgce coding downstream 480105 59439776 ~ 59472172 (+)
LOC110496636 bet1 coding downstream 684988 59644659 ~ 59647881 (+)
G1567503 NA non-coding upstream 26922 58929573 ~ 58930215 (+)
G1567505 LOC106588919 non-coding upstream 31585 58924301 ~ 58925552 (+)
G1567522 NA non-coding upstream 54646 58890403 ~ 58902491 (+)
G1567516 NA non-coding upstream 79677 58877027 ~ 58877460 (+)
G1567515 NA non-coding upstream 87127 58869481 ~ 58870010 (+)
G1567543 NA non-coding downstream 1571 58961242 ~ 58976415 (+)
G1567555 NA non-coding downstream 28377 58988048 ~ 58988650 (+)
G1567653 NA non-coding downstream 229782 59189453 ~ 59189762 (+)
G1567707 NA non-coding downstream 361670 59321341 ~ 59322412 (+)
G1567764 NA non-coding downstream 464564 59424235 ~ 59424987 (+)
G1566445 LOC106588893 other upstream 580131 58364256 ~ 58377006 (+)
G1566224 tbc1d5 other upstream 1010374 57941097 ~ 57946763 (+)
LOC110496592 LOC106588883 other upstream 1036491 57893854 ~ 57935297 (+)
LOC110496591 LOC106588881 other upstream 1094091 57851179 ~ 57870361 (+)
G1567716 asb4 other downstream 350313 59309984 ~ 59312723 (+)
G1567804 col1a2 other downstream 541502 59501173 ~ 59585317 (+)
LOC110496635 NA other downstream 792580 59747650 ~ 59753905 (+)

Expression


Co-expression Network