dlx6a (dlx6)


Basic Information

Item Value
gene id dlx6a
gene name dlx6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58962944 ~ 58966131 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572631.2
TGACCAATCGGAAGGCGTTGCCCTTTGGAGACAAACCATTTTACTTGTAGTGTCTGCATCAAGTCTGGAAGCAAGGATTCAATTTTAACAGAATCCACCTTAAATCTCTGCATTAACTTATGCCCAACTTGCGCCATACCAAGTAAGAAtaccagaggagaaaaaaaatcgAAGTAACTGAGTAATTCGGGTCTTAATAGGACAATATCTGTTCGCTgaagagagagacaacaacacagcgaGAGAATCCATTTGGACTTGAGAGAGGGGGCGAGTGCTCTCAAGGCAGAACATTTGATGATGACCATGACTACGATGGCTAACGGTCTGGAGGCTCAGGACTCGTCCAAGTCGGCTTTCATGGAGTTTGGTCAGCAGTCTCACTCACAACAGAGCTCTCCGTCGATGGCTGCCAGCCACTACCCGCTGCACTGTCTCCATTCCGGGTCGCACCCAGCTCACCATCAGCACGATAACTCTCCGTACTCCGGCAACAATTCTTACAACAGGTCGCTACCGTACTCCTACGTGAGCCACCCCCACCACAGCCCGTACCTGCCGTCCTACCACAATAACACCACTGGCGGTCAGACAAGGTTAGACGGCACAGAGCAGCAGAAAACCACAGTGATTGAAAACGGAGAAATTCGTTTCAACGGGAAAGGCAAGAAGATTCGCAAACCTCGGACGATTTATTCTAGTTTGCAGCTTCAAGCTTTAAATCACCGTTTTCAGCAAACACAATACCTCGCCCTGCCAGAACGCGCTGAGCTGGCTGCTTCTCTCGGACTAACACAGACACAGGTAAAGATATGGTTCCAGAATAAAAGGTCAAAGTTCAAGAAGCTGCTGAAGGCAGGTGGCAACCCGCACGAGAGCGACCCTACTATGCCTGGTTCCATCGGCCTGTCTCCCCGCTCTCCAGCAATTCCTCCAATATGGGACGTGTCAGCGTCCAGCAAAGGGGTTAACATGGCGGCCAACGGCTACATGCCCGGGTATTCTCACTGGTACTCCTCCCCACATCAAGAGACAATGCAGAGATAGACTGCGTAAAGGGCGGGAAGGCCCGAGGTCTGACTCAAGACGTTCGAACCTTCATAGTTTTACCTGCACAATTGATTTCCGTCAGCCTCGAGACAAAAGGGGTGCCCCGTTCGAACAGAGAGATTCATTGGAGACAGGGTCGGCTGCTTTTGATGGATACTTGAGGGCAAAGACTGTGATATGACACACCCTAAAGGAACGAAACGTATTAATTTACCAATGACTGTTCAGTGGGATTGCCTTTGTTGCTTTCATTCATGTAAACATTTGACTGTCAATATACCAAAAATATCACTGACATTCAGCCCGTCACTTGGGCACAGAATGGACAACACTCACGAGTTTTTTGCGGGTTCAACATGATGCCATGATATATTGTTGAAATCTTAACTGCTCTTTGACTGTGTTTTTTTTTCATGCAAAACAAagcaatctgtctgtctgtaaatatATTCTTCGATTTTAGTTGTACATTCACTTTTATTTTTTGTCTTTCATAAATGGATTAATCCATGACTTAAAACAAAGTATCGTGTTTTGTACTGCAATATGAAGATGGTTGATATGTGTAAAAATGACTGATGAATCGTCCCTTGTCAAGATGTCATATGGACGTTCTAAAATGTAGGTCCCATATGGTTTTTCATGAAAAAGTTACAGGCTATTCGTCATAACATTATGTTTCCTCTTTATAAAATAGACATTGTCAATGCACTGCAAACGAACAAAATTGTCAATATATATTAAACAACACCAGAGGAAA

Function

symbol description
dlx6 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including embryonic morphogenesis; positive regulation of epithelial cell proliferation; and roof of mouth development. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: homeobox protein DLX-6

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09314 DLX1_4_6; homeobox protein DLX1/4/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572631.2 True 1810 mRNA 0.45 3 58962944 58966131

Neighbor

gene id symbol gene type direction distance location
ago2 LOC106570475 coding downstream 10452 58934268 ~ 58952492 (-)
si:ch211-57n23.1 LOC106588919 coding downstream 36456 58922028 ~ 58926488 (-)
LOC110496620 LOC106588918 coding downstream 44894 58915161 ~ 58918050 (-)
LOC110496617 LOC106588916 coding downstream 56773 58877846 ~ 58906171 (-)
LOC110496616 lrrc14b coding downstream 86053 58873695 ~ 58876891 (-)
LOC110496627 LOC106588646 coding upstream 94212 59060343 ~ 59060911 (-)
LOC118940999 NA coding upstream 197443 59163574 ~ 59281264 (-)
asb4 asb4 coding upstream 328106 59294237 ~ 59320224 (-)
ppp1r9a ppp1r9a coding upstream 356493 59322624 ~ 59441836 (-)
casd1 casd1 coding upstream 507037 59473168 ~ 59487287 (-)
G1567889 NA non-coding downstream 30303 58927864 ~ 58932641 (-)
G1567886 NA non-coding downstream 51094 58911489 ~ 58911850 (-)
G1567880 NA non-coding downstream 70778 58885908 ~ 58892166 (-)
G1567871 LOC106588914 non-coding downstream 90589 58870937 ~ 58873691 (-)
G1567865 NA non-coding downstream 140439 58822179 ~ 58822505 (-)
G1567913 NA non-coding upstream 12129 58978260 ~ 58978474 (-)
G1567944 shfm1 non-coding upstream 58891 59025022 ~ 59035338 (-)
G1567979 NA non-coding upstream 123878 59090009 ~ 59090699 (-)
G1568021 NA non-coding upstream 201816 59167947 ~ 59168189 (-)
G1568027 NA non-coding upstream 213967 59180098 ~ 59180748 (-)
G1567875 NA other downstream 92937 58869363 ~ 58870007 (-)
G1567080 NA other downstream 551815 58410499 ~ 58411129 (-)
G1566972 NA other downstream 795247 58167384 ~ 58167697 (-)
G1566923 NA other downstream 884798 58074209 ~ 58078146 (-)
G1567931 NA other upstream 38714 59004845 ~ 59074648 (-)
G1568017 NA other upstream 188897 59155028 ~ 59157044 (-)
LOC110496637 gng11 other upstream 763048 59712624 ~ 59738593 (-)
G1569198 NA other upstream 1275800 60241931 ~ 60251369 (-)
G1569258 NA other upstream 1382645 60348776 ~ 60350759 (-)

Expression


Co-expression Network