Gene
RNA
| Item | Value |
|---|---|
| gene id | sem1 |
| gene name | shfm1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 59024919 ~ 59035388 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| shfm1 | 26 proteasome complex subunit DSS1 |
| description |
|---|
| PREDICTED: 26S proteasome complex subunit DSS1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021572632.2 | False | 543 | mRNA | 0.46 | 3 | 59024919 | 59035388 |
| TU1793473 | True | 429 | TUCP | 0.44 | 3 | 59024980 | 59035335 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| dlx5a | dlx5 | coding | upstream | 65248 | 58957121 ~ 58959671 (+) |
| trnaa-ugc-140 | NA | coding | upstream | 79585 | 58945261 ~ 58945334 (+) |
| chrc1 | chrc1 | coding | upstream | 102900 | 58918319 ~ 58922019 (+) |
| LOC110496619 | catsper4 | coding | upstream | 109520 | 58906505 ~ 58915399 (+) |
| LOC110496618 | LOC106588914 | coding | upstream | 151227 | 58864013 ~ 58873692 (+) |
| LOC110496872 | slc25a13 | coding | downstream | 23138 | 59058526 ~ 59156295 (+) |
| pdk4 | LOC106588934 | coding | downstream | 248272 | 59283660 ~ 59298606 (+) |
| sgce | sgce | coding | downstream | 404388 | 59439776 ~ 59472172 (+) |
| LOC110496636 | bet1 | coding | downstream | 609271 | 59644659 ~ 59647881 (+) |
| LOC100305210 | tfpi2 | coding | downstream | 668304 | 59703692 ~ 59709295 (+) |
| G1567555 | NA | non-coding | upstream | 36269 | 58988048 ~ 58988650 (+) |
| G1567543 | NA | non-coding | upstream | 48504 | 58961242 ~ 58976415 (+) |
| G1567503 | NA | non-coding | upstream | 94704 | 58929573 ~ 58930215 (+) |
| G1567505 | LOC106588919 | non-coding | upstream | 99367 | 58924301 ~ 58925552 (+) |
| G1567522 | NA | non-coding | upstream | 122428 | 58890403 ~ 58902491 (+) |
| G1567653 | NA | non-coding | downstream | 154065 | 59189453 ~ 59189762 (+) |
| G1567707 | NA | non-coding | downstream | 285953 | 59321341 ~ 59322412 (+) |
| G1567764 | NA | non-coding | downstream | 388847 | 59424235 ~ 59424987 (+) |
| G1567804 | col1a2 | non-coding | downstream | 465785 | 59501173 ~ 59585317 (+) |
| G1566445 | LOC106588893 | other | upstream | 647913 | 58364256 ~ 58377006 (+) |
| G1566224 | tbc1d5 | other | upstream | 1078156 | 57941097 ~ 57946763 (+) |
| LOC110496592 | LOC106588883 | other | upstream | 1104273 | 57893854 ~ 57935297 (+) |
| G1567716 | asb4 | other | downstream | 274596 | 59309984 ~ 59312723 (+) |
| LOC110496635 | NA | other | downstream | 716863 | 59747650 ~ 59753905 (+) |
| G1568568 | NA | other | downstream | 868776 | 59904164 ~ 59905204 (+) |
