LOC110496627 (LOC106588646)


Basic Information

Item Value
gene id LOC110496627
gene name LOC106588646
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 59060343 ~ 59060911 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110496627
CTGTCCACTGCTGAAATGGCCTCTTCCTGCGGAGATATACTGGTTAAGGAGATTGACAAACGTGCGTCTGGCTAGGTGTTCGAGGTGATCCTAGGAGCTCCAGCTCCAGACGCCAAGGGAGagttccccctttctccccccaaGAAGAAGGACCTGTCCCTGGAGGAGATCCAGAGGAAACTAGAggctgcagaggagaggaggaagtccCATGAAGCGGAGGTTCTGAAACACCTCACTGAGAAGCGGGAGCACGAGAAGGAGGTGCAAAGGAAAGCCATGGAGGAGAACAACAACTTCAGCAAGATAGCAGAGGAGAAGCTTAACCAGAAGATGGAGGCTAACAAAGAAAACTAGGAGGCCCTTCAGGCAGCCATGAGTGAGAAGTTCAAGGAGAAGGACAAGAAACTGGAAGAGGTGCATGCTAAGAAGGAAACCAAAGAGGGCGGTGCCGAGACATCAACAAACTGAACAGTTCAGTCTATGGGGGAATTGTATACTATAGGGTTTTTTACGTATCCAAAGATTGATTTATATTTAGTTGATGGCCAGTATTAATGTTCCCTGCC

Function

NR:

description
PREDICTED: stathmin-like

GO:

id name namespace
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110496627 True 569 mRNA 0.49 1 59060343 59060911

Neighbor

gene id symbol gene type direction distance location
dlx6a dlx6 coding downstream 94212 58962944 ~ 58966131 (-)
ago2 LOC106570475 coding downstream 107851 58934268 ~ 58952492 (-)
si:ch211-57n23.1 LOC106588919 coding downstream 133855 58922028 ~ 58926488 (-)
LOC110496620 LOC106588918 coding downstream 142293 58915161 ~ 58918050 (-)
LOC110496617 LOC106588916 coding downstream 154172 58877846 ~ 58906171 (-)
LOC118940999 NA coding upstream 102663 59163574 ~ 59281264 (-)
asb4 asb4 coding upstream 233326 59294237 ~ 59320224 (-)
ppp1r9a ppp1r9a coding upstream 261713 59322624 ~ 59441836 (-)
casd1 casd1 coding upstream 412257 59473168 ~ 59487287 (-)
col1a2 col1a2 coding upstream 440257 59501168 ~ 59525014 (-)
G1567944 shfm1 non-coding downstream 25005 59025022 ~ 59035338 (-)
G1567913 NA non-coding downstream 81869 58978260 ~ 58978474 (-)
G1567889 NA non-coding downstream 127702 58927864 ~ 58932641 (-)
G1567886 NA non-coding downstream 148493 58911489 ~ 58911850 (-)
G1567880 NA non-coding downstream 168177 58885908 ~ 58892166 (-)
G1567979 NA non-coding upstream 29098 59090009 ~ 59090699 (-)
G1568021 NA non-coding upstream 107036 59167947 ~ 59168189 (-)
G1568027 NA non-coding upstream 119187 59180098 ~ 59180748 (-)
G1568035 NA non-coding upstream 133988 59194899 ~ 59273220 (-)
G1568121 NA non-coding upstream 308664 59369575 ~ 59371107 (-)
G1567871 LOC106588914 other downstream 186652 58870937 ~ 58873691 (-)
G1567875 NA other downstream 190336 58869363 ~ 58870007 (-)
G1567080 NA other downstream 649214 58410499 ~ 58411129 (-)
G1566972 NA other downstream 892646 58167384 ~ 58167697 (-)
G1566923 NA other downstream 982197 58074209 ~ 58078146 (-)
G1568017 NA other upstream 94117 59155028 ~ 59157044 (-)
LOC110496637 gng11 other upstream 668268 59712624 ~ 59738593 (-)
G1569198 NA other upstream 1181020 60241931 ~ 60251369 (-)
G1569258 NA other upstream 1287865 60348776 ~ 60350759 (-)
G1569277 NA other upstream 1318942 60379853 ~ 60389092 (-)

Expression


Co-expression Network