LOC118940999


Basic Information

Item Value
gene id LOC118940999
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 59163574 ~ 59281264 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951073.1
ATCACCTAGAAAGACATCATCTTAAATTGTGACCATATTACAAAGGTACATTGCATCCTTGTGCGACATTCCTTCTTTCCCAGCTCAATAGGAAACAATGGCGGACAACAGTGACCTAAAAGCCCAGCTAGAGCGCAAAAAGCAGCGGCTAGCTCAGAtcagggaggagaagaagaggaaacaggaggagaggaaggagacagagaCGCAGCAGAAGGCTGAAGCTGCCTCAGTGGACTAGGACCGTGACTTGGACCGGAAgcgcagagaggaagagggtctCCTACAGAGCATCGGCATCTCCCCAGAACCACCACTAGTCCCGATCCCCATGTCCCCATCCAAATGAGTGAGCCGACACAGCACCCCCAGTGAGACGAGAAGCCAGGACTCAGCCGATGGGGCATCAGCCGGCAGaaaaccaaagttgcacccctggcTCTACGCAACATGTTTCACATCTCTGAATGTTCCACAACATGATGCCCTACTGAATGAAGCCCCGATGAGGTACTGTAGACATAAAAGGAGTGAATCACAATATTCAATGTCCCAGTGTAATGCTCTGTGGCCCactacttcctgtctgtctccatccaGGCGCAGGATACATAGACTGGGGGCGTCTAAGATCACACAGGTAGACTTCCTATCCAGAGAGGTGGTGTCGTACTGCAAAGAGACTCAGACGGCCATCGCCCATCTATCTGAGGAAGAGCAGGGAGACGACGACTCTTCACTTCCTCCTCCTGGTCCAGAATCTGACCAGCATGAAGAGGAGGACAGCAAGGAGACGAAAGAGGgctacCCCTGCAGGGagctgacagaggaagagaagtagcAGATCCTCAAATCAGAGGAGTTCCTCAGTTTCTTTGACTGCAGCatcagagtgatggagagagccCTGGCTCAGGAATCAGACATCTTCTTCAACTACAGCGGACAAGACCTGGATGACAAGGAGGggtaagaatgtgtgtgtgtgtgtgcgtgtgtgtgtctatctgttgTGAGGTCTGTAGAAGGAACatggtgtgtgtatgcatgcctaTGTGGCTGCTAATGGCCTCATGGAtcCCCAGAGCTGTTGGTGGCGTCCTACAACAACAACGAGGATGCTCCTCACGAGCCTGACGGTGTAGCTCTGGTCTGGAACATGAAGTTTAACAAGAACACACCTGAGTATGTCTTCCACTGCCAGtctTCAGTGGTGTCGGTGGATGCCCGGTTCCATCCTAACCTGGTGGTGGGGGGAACTTACTCTTGTCAGATAGTCCTGTGGGACAACCGCAGCCACCGCAGGACTCCTGTACAGAGAACCCTCCTCTCAGCTGCAGCTCACACGCACCCGGTGTACTGTGTAAACGTGGTGGGAACCCAGAACGCCAACAACCTGATCAAAGTGTCCACAGAGGGCAGGATGTGCTCCTGGAGTCTTGACATGCTCTCTCAGCCACAGGAAAGAGCTGTTCCAGGGTCAGTCCTACCTGACCTCAAGGCGGGGATCTGTGAAATGTTCGAGGGCCACTATGGGCCTGTGACGGGCCTCAGCTATCACAACGCCGTTGGCCCTGTAGACTTCTCCCACCTCTTCGTCACCTCGTCGTTTGACTGGACTGTCAAACTGTGGAGCACTGAGcacAATAAACCCCTCTACTCCTTTGAGGACAACGCTGACTACGTCTATGATGTCATGTGGTCCCCTGTGCACCTGGCTCTGTTTGCCGCTGTGGACGGGATTGGTCGGCTGGATCTGTGGAACCTCAATAATGACACAGAGGTCCCCACAGCCAGTGTGACTATCGAGGGAGCCTGCGCCCTGAACAGGGTATGTTGGGGGTCGGGGAGCAAAGAGGTAGCCGTGGGTGACTCGGAGGGCCGTCTGTGGATCTACGATGCAGGAGAGTTATGA

Function

NR:

description
PREDICTED: cytoplasmic dynein 1 intermediate chain 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951073.1 True 1915 mRNA 0.54 14 59163574 59281264

Neighbor

gene id symbol gene type direction distance location
LOC110496627 LOC106588646 coding downstream 102663 59060343 ~ 59060911 (-)
dlx6a dlx6 coding downstream 197443 58962944 ~ 58966131 (-)
ago2 LOC106570475 coding downstream 211082 58934268 ~ 58952492 (-)
si:ch211-57n23.1 LOC106588919 coding downstream 237086 58922028 ~ 58926488 (-)
LOC110496620 LOC106588918 coding downstream 245524 58915161 ~ 58918050 (-)
asb4 asb4 coding upstream 12973 59294237 ~ 59320224 (-)
ppp1r9a ppp1r9a coding upstream 41360 59322624 ~ 59441836 (-)
casd1 casd1 coding upstream 191904 59473168 ~ 59487287 (-)
col1a2 col1a2 coding upstream 219904 59501168 ~ 59525014 (-)
zgc:85777 ivd coding upstream 366684 59647948 ~ 59696386 (-)
G1567979 NA non-coding downstream 72875 59090009 ~ 59090699 (-)
G1567944 shfm1 non-coding downstream 128236 59025022 ~ 59035338 (-)
G1567913 NA non-coding downstream 185100 58978260 ~ 58978474 (-)
G1567889 NA non-coding downstream 230933 58927864 ~ 58932641 (-)
G1567886 NA non-coding downstream 251724 58911489 ~ 58911850 (-)
G1568121 NA non-coding upstream 88311 59369575 ~ 59371107 (-)
G1568122 NA non-coding upstream 89333 59370597 ~ 59374480 (-)
G1568136 NA non-coding upstream 118789 59400053 ~ 59400923 (-)
G1568395 gng11 non-coding upstream 414565 59695829 ~ 59738616 (-)
G1568438 NA non-coding upstream 476376 59757640 ~ 59760282 (-)
G1568017 NA other downstream 6530 59155028 ~ 59157044 (-)
G1567931 NA other downstream 88926 59004845 ~ 59074648 (-)
G1567871 LOC106588914 other downstream 289883 58870937 ~ 58873691 (-)
G1567875 NA other downstream 293567 58869363 ~ 58870007 (-)
G1567080 NA other downstream 752445 58410499 ~ 58411129 (-)
LOC110496637 gng11 other upstream 447915 59712624 ~ 59738593 (-)
G1569198 NA other upstream 960667 60241931 ~ 60251369 (-)
G1569258 NA other upstream 1067512 60348776 ~ 60350759 (-)
G1569277 NA other upstream 1098589 60379853 ~ 60389092 (-)
LOC110496651 NA other upstream 1329223 60610487 ~ 60642154 (-)

Expression


Co-expression Network