pdk4 (LOC106588934)


Basic Information

Item Value
gene id pdk4
gene name LOC106588934
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 59283660 ~ 59298606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572634.2
ATGCCAATGCCAATCAAATCCAAACTTCACCAACAACAACTCAACACAGAGGTCGGTCTTGTGAAGAGCATTCGTGAATTCTGGAATATTTTTGCTTGTTAAAAGTTTAGGTGATGCAAAGACATTCGGCACTGTTCAGGAATGTGACTGTGTTTCATTGACAATTGTTTTGAATAATGTCAATTTAACGCATTGATATTGCCCTTGGTGGCTagcattagccagctagctagcgtcTTTACGTCTGAGACACTGGAGCGTGCTGCTGGTGAAGAGAAAGGGCATCCTGGCTGACAACAATCGGACTGTCTCGGGACTTCAATTTTAATTTGTTGCAACTATGAAGTTAACGCAGTTTTTGCTAAAGAACAGCTCCATACCGAAACAAGCACTAGTGGATAGGTTTTCCAAGTTCTCACCTTCGCCGCTGTCAATGAAACAATTCATAGACTTTGGCTCAGCCAATGCCTGTGAGAAGACGTCCTTTGTGTTCCTGCGTCAGGAGCTTCCTGTCCGGCTGGCCAACATCATGAAGGAGATCGACTTCCTCCCTGACAAGCTTCTCAGCACCCCCTCACTACAGCTGCTACAGAGCTGGTATGCAACAAGTCTGATGGAGCTTGTGGGCTTCCTGGAGAAAGATCCTGATAATAAAACGATCCTAAAGAAGTTCACTGAGACGCTGGTGAACGTCAGGAACCGTCACAACAACGTGGTCCCCACCATGGCCCAGGGCGTAGTGGAGTACAAGGAGGCTTTCGGCTCTGACCCTGTGACCAATCAGAACGTCCAATACTTCCTGGATCGCTTCTACATGAGCCGCATCTCCACCCGCATGCTGATGAACCAGCACTCTCTCATCTTTGATGGAAGTGCCAACCCCGCCCATCCCAAGCACATTGGCACCATCGACCCCGACTGTGATGTGACAGAGGTGGTAAAAGATGCCTTCGATAGTTCCAAGATGCTCTGTGAGCAGTACTACCTGACCTCGCCAGAGATTGACATCACACAAGTCAACGCCAAAGGTCCTGACCAGCCTCTTCGTATTGTCTATGTGCCTTCCCATCTCTACCACATGCTGTTTGAGCTCTTCAAGAACGCCATGAGAGCAACAGTGGAGACTCATGAAATGGCCCTGCATCTCCCGCCGGTCAAAGTTCGAGTCTCACTGGGCAGTGAGGACCTGACAATCAAGATATCAGATCGAGGTGGAGGAGTTCCCCTGAGGAAGATAGAGCGTTTGTTCAGTTACATGTACTCCACCGCCCCCAGCCCCGTCGATATTGACAACTCACGCAACGCTCCACTGGCTGGTTTCGGCTACGGTCTTCCCATCTCCCGTCTCTATGCCAAGTACTTCCAGGGAGACCTGCAGCTCTACTCCATGGAGGGATATGGGACGTCAGCTGTCATCTACCTGAAGGCCTTGTCCTCAGATTCTGTGGAAAGACTTCCTGTTTACAACCAGTCAGCCATAAGGCATTACCAGACGAGCAACGAGGCGGATGACTGGTGCATGCCCAGCAAGGATCCCAAGAAGCTGGGGAAGTATGAGAGGAGAAGTCAATAGGGGTGTAACGGTACAGGTGTTCGTACCGAACTGTTCGGTAGGGAGCCTCGTTTCAGTCTGCACTCAACCtgaattaatacatttaataaaatatatacaaaataaaagGCCTATAGGCTATGCCTACGCTGCGTTGTAGGCCGGTGCCTCGAGTAAATTTGAGCtgaattcgtttttttttttagggcTATTCTGTTAAAACAACTAGAGCCTATATGCACATTGTAATCTAAATTCAAATCTTAATTGGCACATTTCAAACTGTCCTTTTGTGAGGCGCATCCAGGAAGTAGTTCTGTACGATGGCGAGTGGTGGGGTGGATAATCCAGGAGGATCCTTCGTCGTTTAAATCTCCAGTTTGGGAATGTTTTGGCTTCCCAGTAAATCACATTGGTGATGGACAGAGAGTTGTGGATAAGACGTTAACAGTATGTCGCCACAACTCAACGAGAATAGGCTATCCAGCTGCCAACACCTCAAATATGTTGACGCGTTTATGTCGACGTCACAAGACGGAAACAGAAAGAAACAACCCAAAATCACCTCCCCTCTGCATTCAAGCAGCCCTTGGGAACTGGTTCTGACCGGCCAAAAATGACACGAGCAATCGGTAGGCTGTGTTTAGAttttttacagtctttggttTAAAGCCGCGCCCGTTCTCAGTGGTTGAGAATAGGGAATTCCAGCACCTTGTAAAAATGCTCGATCCACGTTGTGAACTTCCCTCTTGCACCCATGTCAGGTCATACCCGCTCTATATAAGCAAGCCACAGTTTTCTAGGAATTGGAATTGTGTTGCGATTACTTAAAAGTGACAGCCCGTCACCTTACCCCGGAGTGGGAGACGTACCGCGCTACAGACACTCACCCTTTATGAGAAATCACAAGTGTGCATCTGGGACTAAATATAtgacttcacaactggtaaattcCCACCTCCCACATGGTTACAAATGCAGCATCAGTTTGAAAACGTAATTTTCCTGCTGTACCGAAACCAAACCGTGACCCCAAAACCGCAATACACACCGAACCGTGGATTTGGTGAACCGTTACACCCCTAGAAGTTAACCAAACAGACTGAGCTAGCAGGAAGAACAAAGGAGGAAGACCGAAAGGAGGATCAAACTGACAGAAGGCACACAGTTGTACCCACAGCTATTaccgtgtgtgagagagagatgtggattCCTCTCGCAATGGATATTCTCATACATTTCACTTGAAGTGGATAACACATCACTGTCGGAGGCGTTTCAATGGCTATACCAGGATCTCAATTCAATGAGTGACTTCATGAATGTTAGTTAGAAACAGGGTCGTACACTACTCACAATCATCTTTTCTTCTGGTTATAATTTAACCACAGGTTTCAGTTATTTATTCCGCTCACTTATTTTAACGTTATTACACAATGTAAGCTAGTGTTTTTCCTTATTATTAAAAAGGTGAATGTTTAACGATCATTTAATTGATCAATCGACTGAATTAGGTTAGTACAGCTAATGTCACAGCACTATAATCTGTGATACTACAATTTTTAAAATGTGAATTTAGTTCTTAACTCTTCACTCACAGCTACGGTTTGCAGCTTGGACACTGAGCTCTATGGACACAGACAGATAGTGTGTCAGTCAGAAACATGATAAGGCCATGCTGTCAGTCAATGGATTTTCTTTGGTTACCCTTCTACTACAGAATGTTCTGTAGAAGGGGTGGGGGTTGTGGGGTACATAGCGGCCTCCGACTCGTAGACTCTGTTTAGTTTCAGCTCTGAGCATGTCACTTTTTTTTACCCCTCACAAATTTTGTCCACCTCGAACTTTAGACAAAGTTCATCTACTATGTTTTTGGTCCTAAAGGGATTTTATTTGGGTTCCCCCCCATCAACTGTTTTTCTTGGTGCCATTTTGAGTTACACCTTGGCTTGTTTAATAAGATGAGATGAAATCCAAGGTCCATTCAAGGTTTCCTATAAAGAAAGTAAATATTGAAGAGATTGAAGTATTCTAGTGTACTTATTGAGTCCAACTGACTTTTAAAATATAAGTTATGTGAATATTGAGAGAAATGTTAGAAATATCAAAGTTAACTCAATTTTGTAGATTTACTAAAATGATTTAATTTTAGAGGCCGGCTAGGTCTTCCATGCATGAAGTATTTATTGAATAATGTGTGTCAGAGAGCAACATGGGAGTATTATCTCATTTCTGTGATTAGGGATACAGTAAGACTGAGTTGAATCAAATGTTTGTCATTAAATGAATGAATTTCA

Function

NR:

description
pyruvate dehydrogenase (acetyl-transferring) kinase isozyme 2, mitochondrial-like

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K00898 PDK2_3_4; pyruvate dehydrogenase kinase 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572634.2 True 3852 mRNA 0.44 11 59283660 59298606

Neighbor

gene id symbol gene type direction distance location
LOC110496872 slc25a13 coding upstream 127365 59058526 ~ 59156295 (+)
sem1 shfm1 coding upstream 248272 59024919 ~ 59035388 (+)
dlx5a dlx5 coding upstream 323989 58957121 ~ 58959671 (+)
trnaa-ugc-140 NA coding upstream 338326 58945261 ~ 58945334 (+)
chrc1 chrc1 coding upstream 361641 58918319 ~ 58922019 (+)
sgce sgce coding downstream 141170 59439776 ~ 59472172 (+)
LOC110496636 bet1 coding downstream 346053 59644659 ~ 59647881 (+)
LOC100305210 tfpi2 coding downstream 405086 59703692 ~ 59709295 (+)
LOC110496635 NA coding downstream 449044 59747650 ~ 59753905 (+)
LOC110496640 LOC106588943 coding downstream 471377 59769983 ~ 59851172 (+)
G1567653 NA non-coding upstream 93898 59189453 ~ 59189762 (+)
G1567555 NA non-coding upstream 295010 58988048 ~ 58988650 (+)
G1567543 NA non-coding upstream 307245 58961242 ~ 58976415 (+)
G1567503 NA non-coding upstream 353445 58929573 ~ 58930215 (+)
G1567505 LOC106588919 non-coding upstream 358108 58924301 ~ 58925552 (+)
G1567707 NA non-coding downstream 22735 59321341 ~ 59322412 (+)
G1567764 NA non-coding downstream 125629 59424235 ~ 59424987 (+)
G1567804 col1a2 non-coding downstream 202567 59501173 ~ 59585317 (+)
G1567808 NA non-coding downstream 217860 59516466 ~ 59520161 (+)
LOC110496618 LOC106588914 other upstream 409970 58864013 ~ 58873692 (+)
G1566445 LOC106588893 other upstream 906654 58364256 ~ 58377006 (+)
G1566224 tbc1d5 other upstream 1336897 57941097 ~ 57946763 (+)
G1567716 asb4 other downstream 11378 59309984 ~ 59312723 (+)
G1568568 NA other downstream 605558 59904164 ~ 59905204 (+)

Expression


Co-expression Network