col1a2 (col1a2)


Basic Information

Item Value
gene id col1a2
gene name col1a2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 59501168 ~ 59525014 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953412.1
CTGTATTATTCTAGCATCACGGCAGCAGGTTTCCAAGCTTGGAGTTACTCTAGTCACCACAACTGTATGCCTGCTTGAAGTAGTTAAACAGGGCACTGCAGCACAAGGAGTCTGCATGTCTGCTTAGACATGCTCAGCTTTGTGGATAACCGGATTCTGTTGCTGCTTGCAGTAACTTCATTTCTAGCATCATGCCAATCGGGCCCAACGGGAGAGAAAGGACCTCGAGGTGACAGGggtcccCAAGGCCGTAATGGAAGAGATGGTAAAGATGGACTCCCCGGCGTTGCCGGGCCCCCTGGTCCCCCTGGACTTGGAGGAAACTTTGCTGCTCAGTTTGATGGAGGAAAAGGCAGCGACCCCGGACCTGGACCCATGGGTTTGATGGGATCTAGAGGGCCCAACGGACCTCCCGGATCCCCTGGACCCCAAGGATTCACAGGACACGCTGGAGAGCCTGGAGAGCCCGGACAGACTGGCTCCATTGGTGCTCGTGGACCTTCTGGATCCGCTGGCAAGCCCGGTGAGGATGGTAACAACGGCAGACCTGGAAAGCCTGGTGACAGAGGTGGCCCTGGAACTCAGGGTGCTCGTGGATTCCCCGGAACTCCTGGACTTCCTGGAATGAAGGGACACAGAGGTTACAATGGTCTGGATGGACGCAAGGGAGAGTCTGGTTCAGGAGGTGCTAAGGGTGAGACAGGTGCCCATGGAGCTAACGGAAACCCCGGACCAGCTGGTTCTCGTGGTCTGAATGGTGAGAGAGGCCGTGCCGGCCCTGCTGGCCCCGCTGGTGCCCGTGGTGCTGATGGAAGCACCGGACCCGCCGGCCCTGCTGGTCCTCTTGGAGCAGCTGGCCCCCCTGGTTTCCCTGGAGCCCCTGGCCCCAAGGGAGAGATCGGAGGTGCTGGAGCCAATGGCCCATCCGGACCTCAGGGAGGCAGAGGAGAGCCCGGTACTAATGGAGCCGTTGGCCCCGTCGGTCCCGTTGGTAACCCTGGTAACAATGGTATCAACGGCGCCAAGGGAGCTGCTggtCTCCCCGGTGTTGCTGGAGCCCCTGGTTTCCCCGGCCCAAGAGGAGGTCCCGGCCCCCAGGGCCCTCAGGGATCCACTGGAGCTAGAGGCCTTGGTGGTGACCCTGGACCCTCTGGACAAAAAGGAGATTCTGGTGCTAAGGGAGAGCCTGGTCACTCTGGTGTCCAGGGTGCCGCTGGTCCCGCTGGTGAGGAGGGCAAGAGAGGCTCAACTGGCGAGGTTGGTGCCACTGGGCCCGCTGGTCTGCGTGGAGCTAGAGGAGGTGCTGGAACTCGTGGTCTGCCTGGTCTGGAGGGAAGAGGTGGTCCCATTGGTATGCCCGGAGCTCGTGGAGCCACCGGCCCTGGTGGTATCCGTGGAGCCCCTGGTGATGCCGGTCGTGCTGGCGAGTCTGGTCTGACTGGAGCCAGAGGCCTGCCCGGAAACTCTGGACAGGGTGGACCCCCAGGCAAGGAAGGCCCATCTGGTGCTGCTGGTCTGGACGGACGCACTGGTCCCCCCGGCCCAACTGGACCCAGAGGCCAGCCCGGTAACATTGGATTCCCCGGCCCCAAGGGACCTGGAGGTGAGGCTGGCAAAGGTGGTGATAAGGGACCAACTGGTGCAACTGGTCTGAGAGGCGGCCCAGGTGCTGATGGTAACAATGGAGCCCCCGGCCCAGCTGGAGTCGTTGGTAACGCTGGTGAGAAGGGAGAGCAGGGACCCTCTGGTGCACCAGGTTTCCAGGGTCTGCCCGGCCCCGCTGGACCTGCTGGAGAGGCTGGCAAACCTGGCAACCAAGGTATGCACGGAGACCAGGGACTCCCTGGACCCGCTGGCGTCAAGGGAGAGCGTGGAAACTCTGGTCCTGCTGGCTCTGCTGGATCTCAGGGTGCCATCGGTGCTCGTGGACCTGCTGGAACTCCAGGCCCCGATGGTGGCAAGGGAGAGCCTGGTTCTGTCGGCATTGCTGGCGGCCCTGGACACCAAGGACCCGGTGGCATGCCCGGTGAACGCGGTGCCGGTGGTACTCCTGGACCCAAGGGTGAGAAGGGTGAGGGTGGACACAGAGGACTTGAGGGTAACATGGGAAGAGATGGAGCCCGTGGTCCCGCCGGACCAAGTGGACCCCCTGGACCTTCCGGTGCTAATGGTGAAAAGGGTGAGTCTGGCTCCTTCGGCCCTGCCGGACCTGCTGGTCTCCGTGGACCCAGTGGAGAGCGTGGAGAGGGTGGACCTGCCGGACCTCCTGGCTTTGCCGGACCCCCTGGTTCTGATGGTCAGTCTGGACCTAGAGGAGAGAAAGGACCCGCTGGTGGGAAGGGAGATGTCGGCCCCGCCGGCCCTGCTGGACCTGCTGGCCAATCTGGACCTTCTGGTGCTAGTGGACCCGCTGGCCCCCCTGGTGGTCGTGGTGATGCTGGACCTTCTGGTCTGACTGGTTTCCCTGGTGCTGCCGGTAGAGTTGGAGGCCCCGGTCCCGctGGTATTTCTGGGCCCCCTGGCTCCGCCGGTCCCGCTGGTAAGGATGGCCCTCGTGGTCTCCGTGGTGATTCTGGTCCCGGGGGACCTCAGGGAGAGCATGGACAAATTGGACCCTCTGGTATCGCTGGAGACAAGGGACCCACTGGAGAGAGCGGTCCTCCCGGTGCTCCTGGTACCGCTGGACCCCAAGGTGTGCTCGGACCCTCTGGCTTCGTTGGTCTGCCTGGTTCCCGTGGTGACAAGGGTCTTCCTGGTGGTCCTGGTGCTGTGGGTGAGCCTGGTAGACTTGGACCCGCTGGTGCCTCTGGACCCCGTGGTCCCGCTGGTAACATTGGCATGCCCGGTATGACTGGTACTCAGGGAGAGGCTGGACGTGAGGGTAGCACTGGCAACGATGGACCTCCCGGCCGTCCCGGAACTGCTGGCTTCAAGGGTGACCGTGGTGAGCCTGGTTCTCCTGGAGCCCTTGGAAGCTCTGGTCAACCCGGACCTAACGGACCCTCCGGCGCCGTCGGCAGACCTGGAAACCGTGGAGAGTCTGGCCCAACTGGAAATGGTGGTCCCGTCGGTGCTGCTGGTGCCCGTGGTGCCCCCGGCCCCGCTGGTCCCCGTGGAGAGAAGGGTGGGGCTGGAGAGAAAGGAGACAGAGGCATGAAGGGTCTGCGTGGACATGGTGGTCTCCAGGGAATGCCCGGACCAAACGGACCATCTGGTGAGACTGGCTCTGCTGGTATCACTGGACCTGCTGGACCCAGAGGCCCTGCCGGACCCCATGGTCCCCCTGGTAAGGATGGTAGAGCTGGAGGTCATGGTGCTATCGGACCTGTTGGACACCGTGGTTCCCCTGGACATCTCGGACCTGCTGGTCCCCCCGGCTCTCCTGGTCTTCCCGGACCCGCAGGTCCCGCTGGTGGTGGATACGATCAGTCTGGTGGATACGATGAGTACAGAGCCGACCAGCCCTCTCTCAGGGCCAAGGACTACGAGGTGGACGCCACCATCAAGTCCCTAAACTCCCAGATCGAGAACTTGCTCACCCCCGAGGGTTCCAAGAAGAACCCCGCCCGTACCTGCAGAGACATCAAACTCAGCCACCCTGAATGGAGCAGTGGTTTCTACTGGATCGACCCCAACCAGGGCTGCATCGCTGACGCCATCAAGGCCCACTGCGACTTCTCCACCGGACACACCTGCATCCACCCTCACCCAGAGAGCATCGCCCGCAAGAACTGGTACAGGAGCTCTGAGAACAAGAAGCACGTCTGGTTCGGAGAGACCATTAACGGTGGTACTGAGTTTGCGTACAATGACGAGACCCTGAGCCCCCAGAGCATGGCCACTCAGCTGGCCTTCATGCGTCTCCTGGCCAACCAGGCCACCCAGAACATCACGTACCACTGCAAGAACAGCGTAGCGTACATGGACGGCGAGAACGGCAACCTGAAGAAGGCCGTGCTCCTGCAGGGCTCCAACGACGTGGAGCTGAGTGCCGAGGGCAACAGTCGCTTCACTTTCAACGTTCTGGAGGATGGCTGCACTAGACACACTGGCCAGTGGAGCAAGACAGTCATTGAATACAGAACAAATAAACCATCTCGCCTGCCCATCCTCGACATTGCACCTTTGGACATTGGTGGAGCTGATCAAGAGTTTGGTTTGGACATTGGCCCAGTCTGTTTCAAATAAATGGACTTATGATAAattaaaaaaagagagaaagaaaaaaagaatctCTGCCCTTCTTTCTGTGTTGTTTTTATACTGAATGCTGATTTTCCACTGCGCATCCACTTGCTTAAACTGGGCTCTATCGGAGAGGACCAATGGACTGAACAGAGCGTTGTGCAATGCAAATTAATACAGCAGCCCAAAGAGACGCGGGAAAACACCATGTTGTGGGACATGTCAtcattttgtaaaaaataaaagaagTGTAATAAAAACGCTGAACGTATGCATCACTTTGTGGTCTTTGTATATCTTCCAATGAGGAGGTTTAAAACCAcaaaaatattacaaaaaaagGTTGAAGCTACCtcatgcctgttttttttttgaaaaaaatattGAGAACCTGTCTGATCCACAACCTAGAAGTTAAGAGTTCTACGGCTTCAAGCTCCGTCCTGTATCAAAGGTGCTGAATTACTTGAAGCAGAGACCTATGGTGCTAAACATCCAGCTGTGTAGGAGCAGAAAACCACTCTCATTTTTACTGTGTTTCTTTGTATTGACTGAGTCTTGCACAGGTCCCCCCCCTGATTAACCCCATTTTAAGCAGGTGGAATTTCCTAAGTCTGGTCTGATGTTTGTCTGGTTTtgaccgtttaaaaaaaaaacgtttttttgttcatttttgtCTCGaagttttgatttgtttttgttcAGCCATTTTTCTCCTTCAATTCCCCCTTCAATGCAGTGTTCATGCTGACAGCAcattatttcatccatttttaatGGATTTTAGgcggcctctctctctcaaaagaAAAAAACCACAAAGTTTATTGTACCTATTTTGTATATGTGAGATGTTTAAATCGATTGTGAAAAGTTCTGAAATAAAGCATGTCCAATGTTCCCAAACACCATTCAATGACTAAAGTGCTTTCATGTTTTATAATGATAATATCATTAAATGATGTTGGCGTTGAA

Function

symbol description
col1a2 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within response to mechanical stimulus and skeletal system development. Predicted to be located in extracellular region. Predicted to be part of collagen type I trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including cranium; integument; myoseptum; osteoblast; and pectoral fin. Used to study Ehlers-Danlos syndrome and osteogenesis imperfecta. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome (multiple); heart valve disease; intracranial aneurysm; osteogenesis imperfecta (multiple); and osteoporosis. Orthologous to human COL1A2 (collagen type I alpha 2 chain).

NR:

description
collagen alpha-2(I) chain-like isoform X1

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0046872 metal ion binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K06236 COL1A; collagen type I alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953412.1 True 5160 mRNA 0.57 49 59501168 59525014

Neighbor

gene id symbol gene type direction distance location
casd1 casd1 coding downstream 13881 59473168 ~ 59487287 (-)
ppp1r9a ppp1r9a coding downstream 59332 59322624 ~ 59441836 (-)
asb4 asb4 coding downstream 180944 59294237 ~ 59320224 (-)
LOC118940999 NA coding downstream 219904 59163574 ~ 59281264 (-)
LOC110496627 LOC106588646 coding downstream 440257 59060343 ~ 59060911 (-)
zgc:85777 ivd coding upstream 122934 59647948 ~ 59696386 (-)
LOC110496639 NA coding upstream 148660 59673674 ~ 59679024 (-)
LOC110496638 gng11 coding upstream 171832 59696846 ~ 59698164 (-)
LOC110496637 gng11 coding upstream 187610 59712624 ~ 59738593 (-)
LOC110496642 vps50 coding upstream 381892 59906906 ~ 59932090 (-)
G1568136 NA non-coding downstream 100245 59400053 ~ 59400923 (-)
G1568122 NA non-coding downstream 126688 59370597 ~ 59374480 (-)
G1568121 NA non-coding downstream 130061 59369575 ~ 59371107 (-)
G1568035 NA non-coding downstream 227948 59194899 ~ 59273220 (-)
G1568027 NA non-coding downstream 320420 59180098 ~ 59180748 (-)
G1568395 gng11 non-coding upstream 170815 59695829 ~ 59738616 (-)
G1568438 NA non-coding upstream 232626 59757640 ~ 59760282 (-)
G1568502 NA non-coding upstream 324615 59849629 ~ 59851133 (-)
G1568505 NA non-coding upstream 327996 59853010 ~ 59853235 (-)
G1568517 NA non-coding upstream 338924 59863938 ~ 59864236 (-)
G1568017 NA other downstream 344124 59155028 ~ 59157044 (-)
G1567931 NA other downstream 426520 59004845 ~ 59074648 (-)
G1567871 LOC106588914 other downstream 627477 58870937 ~ 58873691 (-)
G1567875 NA other downstream 631161 58869363 ~ 58870007 (-)
G1567080 NA other downstream 1090039 58410499 ~ 58411129 (-)
G1569198 NA other upstream 716917 60241931 ~ 60251369 (-)
G1569258 NA other upstream 823762 60348776 ~ 60350759 (-)
G1569277 NA other upstream 854839 60379853 ~ 60389092 (-)
LOC110496651 NA other upstream 1085473 60610487 ~ 60642154 (-)

Expression


Co-expression Network