LOC110496636 (bet1)


Basic Information

Item Value
gene id LOC110496636
gene name bet1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 59644659 ~ 59647881 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572652.2
CGGTGAGTGGGCGGAGTCATCCATGTAAACATTTGTCTTATCAGGTTTCCGTACGATGTCGTGGCGTTTGCTCTTCTGCTGAATTcgtgttgctagctagctatctacatcAACAACACCACTGCTTTGATACACATTATCACCTAAGTGTTACAGTTAGGATCTTTTTATTGAATAAATCAAAATGAGACGAGCAGGTTTGGGCGAAGGAGGACCTGAAAATTATGTGGCCAGTGGATACAGCGCGTACGAAGAGGAAAATGAACACTTACAAGAGGGTCTGAGAGCCAAAGTCAGCGCCTTGAAGCATCTGTCAATAGATATCGGAACAGAAGTGAAATACCAGAAAAACATGTTGGACGATATGGACTCAGACTTTGACTCAACGGGAGGTTTGCTGGGGGCCACCATAGGGAGAGTGAAGCAGCTTTCCAGGGGAAGCCAGACCAAGCTCCTGTGCTACATGCTGTTCTTCTGCTTCTTGGTCTTCACCATCCTTTACTGGTTTATCAAACTGAGGTGATGTGTTACAGGAGGCCCCGGCATTTCCCTCCCTGCCTCGTGTTTCCTTTCCCGGTCTGTGTCATGCGTGCACCTCTGCATCAGAAGACCAGGATGATGACAATGAGACTGTAAGAATGTGCTTAATGTTTGAGAAGACTCCCCCTAAATCATCAATGACAATGTGCAATAGGGAATAATAAAAAATGTCTGTTAATTTTAGACAACCCTGATGGAATGAGTAGACACTGCCATACGTTTGTAATGAAACACTTTCGTACAGAGTCCCTTAACGATGATGCATATAAGTTGATGTACAGGATGAGTGATCTATTGCATCAACAAATCTGGCAAGGCTAAGCAGTAACATGtgttacacaggcagcccaattctgatctttttccccAATcacatttttcagagctgattaGTGAAAAAAGATTGGAATTGGGTTCACTGTCAGAGGTTGCTTGATCCAATGTGAGACTGATTTAACATTTGATCAATAGTGTCCAACAATTGAGTTCCACTATAAACAAAcatcttgtttttgttttgaggaATAAATTAGGGTGTGCGCTCACTTCAAACATTTCCTGTCCCATCTACAGAGACTGTTCATCTCCACTGCACACTGTTCTCCCGGTAACTGATGTAAAATGTTTTATATGTAAATAAACATGGATGTTTTGGA
>TU1794295
GATGTCGTGGCGTTTGCTCTTCTGCTGAATTcgtgttgctagctagctatctacatcAACAACACCACTGCTTTGATACACATTATCACCTAAGTGTTACAGTTAGGATCTTTTTATTGAATAAATCAAAATGAGACGAGCAGGTTTGGGCGAAGGAGGACCTGAAAATTATGTGGCCAGTGGATACAGCGCGTACGAAGAGGAAAATGAACACTTACAAGAGGGTCTGAGAGCCAAAGTCAGCGCCTTGAAGCATCTGTCAATAGATATCGGAACAGAAGTGAAATACCAGAAAAACATGTTGGACGATATGGACTCAGACTTTGACTCAACGGGAGGTTTGCTGGGGGCCACCATAGGGAGAGTGAAGCAGCTTTCCAGGGGAAGCCAGACCAAGCTCCTGTGCTACATGCTGTTCTTCTGCTTCTTGGTCTTCACCATCCTTTACTGGTTTATCAAACTGAGGTGATGTGTTACAGGAGGCCCCGGCATTTCCCTCCCTGCCTCGTGTTTCCTTTCCCGGTCTGTGTCATGCGTGCACCTCTGCATCAGAAGACCAGGATGATGACAATGAGACTGTAAGAATGTGCTTAATGTTTGAGAAGACTCCCCCTAAATCATCAATGACAATGTGCAATAGGGAATAATAAAAAATGTCTGTTAATTTTAGACAACCCTGATGGAATGAGTAGACACTGCCATACGTTTGTAATGAAACACTTTCGTACAGAGTCCCTTAACGATGATGCATATAAGTTGATGTACAGGATGAGTGATCTATTGCATCAACAAATCTGGCAAGGCTAAGCAGTAACATGtgttacacaggcagcccaattctgatctttttccccAATcacatttttcagagctgattaGTGAAAAAAGATTGGAATTGGGTTCACTGTCAGAGGTTGCTTGATCCAATGTGAGACTGATTTAACATTTGATCAATAGTGTCCAACAATTGAGTTCCACTATAAACAAAcatcttgtttttgttttgaggaATAAATTAGGGTGTGCGCTCACTTCAAACATTTCCTGTCCCATCTACAGAGACTGTTCATCTCCACTGCACACTGTTCTCCCGGTAACTGATGTAAAATGTTTTATATGTAAATAAACATGGATGTTTTGGA

Function

symbol description
bet1 Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and vesicle fusion with Golgi apparatus. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi trans cisterna. Orthologous to human BET1 (Bet1 golgi vesicular membrane trafficking protein).

NR:

description
BET1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572652.2 False 1196 mRNA 0.43 4 59644659 59647881
TU1794295 True 1142 TUCP 0.42 4 59644713 59647881

Neighbor

gene id symbol gene type direction distance location
sgce sgce coding upstream 172487 59439776 ~ 59472172 (+)
pdk4 LOC106588934 coding upstream 346053 59283660 ~ 59298606 (+)
LOC110496872 slc25a13 coding upstream 488364 59058526 ~ 59156295 (+)
sem1 shfm1 coding upstream 609271 59024919 ~ 59035388 (+)
dlx5a dlx5 coding upstream 684988 58957121 ~ 58959671 (+)
LOC100305210 tfpi2 coding downstream 55811 59703692 ~ 59709295 (+)
LOC110496635 NA coding downstream 99769 59747650 ~ 59753905 (+)
LOC110496640 LOC106588943 coding downstream 122102 59769983 ~ 59851172 (+)
cdk6 cdk6 coding downstream 608826 60256707 ~ 60351422 (+)
LOC110496955 LOC106588949 coding downstream 708069 60355950 ~ 60361942 (+)
G1567805 NA non-coding upstream 101438 59520954 ~ 59543221 (+)
G1567808 NA non-coding upstream 124498 59516466 ~ 59520161 (+)
G1567804 col1a2 non-coding upstream 139794 59501173 ~ 59585317 (+)
G1567764 NA non-coding upstream 219672 59424235 ~ 59424987 (+)
G1568302 NA non-coding downstream 48884 59696765 ~ 59738580 (+)
G1568310 NA non-coding downstream 62963 59710844 ~ 59757414 (+)
G1568373 NA non-coding downstream 173495 59821376 ~ 59822173 (+)
G1568384 NA non-coding downstream 197265 59845146 ~ 59845375 (+)
G1568385 NA non-coding downstream 198906 59846787 ~ 59847176 (+)
G1567716 asb4 other upstream 331936 59309984 ~ 59312723 (+)
LOC110496618 LOC106588914 other upstream 770969 58864013 ~ 58873692 (+)
G1568568 NA other downstream 256283 59904164 ~ 59905204 (+)
G1569099 NA other downstream 962067 60609948 ~ 60616294 (+)
recql4 recql4 other downstream 2320067 61967906 ~ 61991797 (+)

Expression


Co-expression Network