LOC110496639


Basic Information

Item Value
gene id LOC110496639
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 59673674 ~ 59679024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469581.2
ttaaaatcggccccaattaatcggccattccgattaatcggtcgaccaaATGTGAAATGGTTTGCTGAAATGTGCCTCCAAACATTTGTTGGATATGCATTGCCTAATCAATATAATTGAATCACACCAATTTTGTTAGTAATATCTTCTGTGTTTTCCTGAATTACTATACAATAGAGATCAGGGCCCGTAGCCACAAAGCATCTCACAAAAGGTCCTAGGAATCCTGTTAAAACCTGTTttaggaagaagaaaaaaatcccaGCTCGGAGTAGTTTTTAGGTTGATGTTAAGACACTCCACAGACAAACTCTGAGCTTGGAGTAAAATTAACTCATAAAAGTGTATGACTGAGGTACCTCAAAGGAAATATGGGGATGACATTCATTGACATTGTTTCAAATGATGGGGAATAACCAATCGCAGTGGGGCATCACCAGCTGTGATGCCTCAATCTTCAGATAACCACAGTCAATGTGACTGTACATCAAATGTTGCAATGGTAAAACTTGAgTCTGGTTAGATTGATTGGAATGGGAGAGGATTACACCGACCAGGAGGCTTAGGCCTGTACTGTTGGGATGGAGAAATACCAGATGGACTGGGAATGGTCTTCACAGAAGAAATAACCATTGAGGGATTTAAATGTCAAATGatcaaatgaaataaaatgttattcgtcacatgcttcgtaaaaaacaggtgtagactaatagtgaaattcttacgggcccttcccaacaatgcagagagaaagaaaatagagaattaatagaaaagtaaaacacgtaataataaatacataatgAGTAATGACAACTTGGCTatgtacacagggtaccagtactcagtcgatgtgcaggggtatgaggtaattgagatatatactgtacgtacatataactaggaataaagtaacagataataaacagtaacagcagcatatgtgatgagtgaAGAAGGTTAATGCAAAGGTCAAggcagatagtccaggtagctatttggcTAACTATTAAACTAAATGTTAagctgtcttatggcttgggggtagaagctgtgcaGTTACCaaaccaagcggtgatgcagccagtcaagatgctctcaatggtgcagctttaTAACCTTTTCAGCATCCTGAGGGGGAAGAAGTTGTGCCTTCTTCAAGACCGTGTTAGTATGTGTGGACCATGATGCATCCTTATCTTCAGATGACGAAAAGGACTTAGCTTTGAACGATGACGGACTTGTAGAGCGCAGGGGAGTTTTGGAATGAGAGGTCTAGGGCTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469581.2 True 1287 mRNA 0.40 3 59673674 59679024

Neighbor

gene id symbol gene type direction distance location
col1a2 col1a2 coding downstream 148660 59501168 ~ 59525014 (-)
casd1 casd1 coding downstream 186387 59473168 ~ 59487287 (-)
ppp1r9a ppp1r9a coding downstream 231838 59322624 ~ 59441836 (-)
asb4 asb4 coding downstream 353450 59294237 ~ 59320224 (-)
LOC118940999 NA coding downstream 392410 59163574 ~ 59281264 (-)
LOC110496638 gng11 coding upstream 17822 59696846 ~ 59698164 (-)
LOC110496637 gng11 coding upstream 33600 59712624 ~ 59738593 (-)
LOC110496642 vps50 coding upstream 227882 59906906 ~ 59932090 (-)
LOC110496641 vps50 coding upstream 339610 60018634 ~ 60200664 (-)
LOC110496644 LOC106588945 coding upstream 522924 60201948 ~ 60254724 (-)
G1568136 NA non-coding downstream 272751 59400053 ~ 59400923 (-)
G1568122 NA non-coding downstream 299194 59370597 ~ 59374480 (-)
G1568121 NA non-coding downstream 302567 59369575 ~ 59371107 (-)
G1568035 NA non-coding downstream 400454 59194899 ~ 59273220 (-)
G1568027 NA non-coding downstream 492926 59180098 ~ 59180748 (-)
G1568395 gng11 non-coding upstream 16805 59695829 ~ 59738616 (-)
G1568438 NA non-coding upstream 78616 59757640 ~ 59760282 (-)
G1568502 NA non-coding upstream 170605 59849629 ~ 59851133 (-)
G1568505 NA non-coding upstream 173986 59853010 ~ 59853235 (-)
G1568517 NA non-coding upstream 184914 59863938 ~ 59864236 (-)
G1568017 NA other downstream 516630 59155028 ~ 59157044 (-)
G1567931 NA other downstream 599026 59004845 ~ 59074648 (-)
G1567871 LOC106588914 other downstream 799983 58870937 ~ 58873691 (-)
G1567875 NA other downstream 803667 58869363 ~ 58870007 (-)
G1567080 NA other downstream 1262545 58410499 ~ 58411129 (-)
G1569198 NA other upstream 562907 60241931 ~ 60251369 (-)
G1569258 NA other upstream 669752 60348776 ~ 60350759 (-)
G1569277 NA other upstream 700829 60379853 ~ 60389092 (-)
LOC110496651 NA other upstream 931463 60610487 ~ 60642154 (-)

Expression


Co-expression Network