LOC110496635


Basic Information

Item Value
gene id LOC110496635
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 59747650 ~ 59753905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572651.2
AGACTAGCCTACATTTATTGTAGTCTCTTTCCACATCAATGTTTGGACCGTATCTATTGCGCGCGATGAAGGACGTTTGACATATTGCGTTATTAGTTCAACAGTGTATGAACGTGACGTTGTCTATGATGCAGATCAAAACATTAATCAGGTCGTTCCTACTTCGGGTTTGTATGGAAATTAGCCATTATAGCCCGCCCCTCGTGCCGTTTGGGAAAGCGTTTACAAGAGTATAAATGGCTGTACTGATGGTGCGAAAAGTTAGAAGAGTTAATTAAGGAGAATTGAACTTGGGAAAAATCTACAAACATGGAGCACAGTTCATTGATTTTTCTGATCCTTTCATGCTCTTTTTGTTACGTTGTTGCATTTTCACCGAAACAAGAGGTGTGTCTACTTCAAGTAGATGAGGGACCTTGCAAAGTATATCTCCAACGTTACTACTACAATACTTTCACTCAACAATGCGAAGAGTTTGTCTATGGAGGGTGCCAAGGGAATGCAAACAACTTCAAGAGTTTTCTGGCGTGTCAGATAGCATGTTTTAGAATACCAAAGGTCCCCCAGATCTGCACGTTCCAGAAAGAGATGGGTCCCTGTGAGGGCTATTTCTTGAGCTACTTCTTCAACATGACCACCATGCAGTCTACTCCTGTGCTCTGCCTGGATCCCCTGGATAAAGGAGGGTGTGCTGCATCTATACCGCGCTACTACTACAACTCAGCCTCCAGGATGTGTGAGCAGTTCATCTATTCAGGTTGTGGAGGAAGCAGCAACAACTTTATATCCAGACAAAGCTGCATGGACGTCTGTGCTAAAGCTGGGAAACCATGGATAAGCAGAAAAACAGGCAGAAGAGCAGGCATGATGAGAACAACTTCCAAAAACCGTATTAGAATAAAGCCTAATAACAATATTAAATGGTCAACAATTTGATTCAGTGATTTTATTCAAAGGGGCACATGAATTGACTATAATTGAACTAACATTGACATgttgaattgtattttttttactgcaCCATAATTGACTTGCTACTTGCACTGCCTTGTCTGTAATGGTTCATGGTGATGCATAGTTGAAAATAGcaaaccaatcaatcaaatgtgaATCGACCTACACCAGCAGTATTTTTGCTGAGTACGTTTCTCAAGACAGTTTGTATTGTAGTATACATTTACCATGGCAACTATCAtacaatataaaaatatatttttgtagattttttttaatgtattttagatttttttaaatactttaacAGTTTACTGTTTTCCACCATTTATGATGAAGTTATACTGAGGCACTGTTTAAATTGTTAAGCAATATTAACAAAATAATTTatgtattgttttgtgttttcaaCATAGTACATTTTAACAAAAACCTTTGCTTAACTTTATATTAAGTTTTCACACCATGACATAATGGATATAATAAAATAACTCAAGACATTTTTGTCTGTACGCTCCGTTGCTTTTCTCCCATTTGTCCTGAAATTCCACTTTGCCTCTAAATATAATCCTGTTACTAAACAGGAATAAGAACTGAAT
>TU1794357
ACTCTCTCCCAGAGTTCTTATAGTTGTTTTATGTGCTTGACAGCTACTCCTGTGCTCTGCCTGGATCCCCTGGATAAAGGAGGGTGTGCTGCATCTATACCGCGCTACTACTACAACTCAGCCTCCAGGATGTGTGAGCAGTTCATCTATTCAGGTTGTGGAGGAAGCAGCAACAACTTTATATCCAGACAAAGCTGCATGGACGTCTGTGCTAAAGCTGGGAAACCATGGATAAGCAGAAAAACAGGCAGAAGAGCAGGCATGATGAGAACAACTTCCAAAAACCGTATTAGAATAAAGCCTAATAACAATATTAAATGGTCAACAATTTGATTCAGTGATTTTATTCAAAGGGGCACATGAATTGACTATAATTGAACTAACATTGACATgttgaattgtattttttttactgcaCCATAATTGACTTGCTACTTGCACTGCCTTGTCTGTAATGGTTCATGGTGATGCATAGTTGAAAATAGcaaaccaatcaatcaaatgtgaATCGACCTACACCAGCAGTATTTTTGCTGAGTACGTTTCTCAAGACAGTTTGTATTGTAGTATACATTTACCATGGCAACTATCAtaca

Function

NR:

description
Tissue factor pathway inhibitor 2 precursor

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572651.2 False 1553 mRNA 0.37 5 59747650 59753905
TU1794357 True 596 TUCP 0.40 2 59752251 59753551

Neighbor

gene id symbol gene type direction distance location
LOC100305210 tfpi2 coding upstream 38355 59703692 ~ 59709295 (+)
LOC110496636 bet1 coding upstream 99769 59644659 ~ 59647881 (+)
sgce sgce coding upstream 275478 59439776 ~ 59472172 (+)
pdk4 LOC106588934 coding upstream 449044 59283660 ~ 59298606 (+)
LOC110496872 slc25a13 coding upstream 591355 59058526 ~ 59156295 (+)
LOC110496640 LOC106588943 coding downstream 16078 59769983 ~ 59851172 (+)
cdk6 cdk6 coding downstream 502802 60256707 ~ 60351422 (+)
LOC110496955 LOC106588949 coding downstream 602045 60355950 ~ 60361942 (+)
LOC110496647 LOC106588950 coding downstream 614200 60368105 ~ 60370534 (+)
efcab1 efcab1 coding downstream 616747 60370652 ~ 60372615 (+)
G1568302 NA non-coding upstream 9070 59696765 ~ 59738580 (+)
G1568244 NA non-coding upstream 99338 59602283 ~ 59648312 (+)
G1567805 NA non-coding upstream 204429 59520954 ~ 59543221 (+)
G1567808 NA non-coding upstream 227489 59516466 ~ 59520161 (+)
G1567804 col1a2 non-coding upstream 242785 59501173 ~ 59585317 (+)
G1568373 NA non-coding downstream 67471 59821376 ~ 59822173 (+)
G1568384 NA non-coding downstream 91241 59845146 ~ 59845375 (+)
G1568385 NA non-coding downstream 92882 59846787 ~ 59847176 (+)
G1568506 NA non-coding downstream 101564 59855469 ~ 59855716 (+)
G1567716 asb4 other upstream 434927 59309984 ~ 59312723 (+)
sem1 shfm1 other upstream 712315 59024919 ~ 59035388 (+)
dlx5a dlx5 other upstream 788799 58957121 ~ 58959671 (+)
G1568568 NA other downstream 150259 59904164 ~ 59905204 (+)
G1569099 NA other downstream 856043 60609948 ~ 60616294 (+)
recql4 recql4 other downstream 2214043 61967906 ~ 61991797 (+)
G1571059 NA other downstream 2507719 62261624 ~ 62262217 (+)

Expression


Co-expression Network