LOC110496644 (LOC106588945)


Basic Information

Item Value
gene id LOC110496644
gene name LOC106588945
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 60201948 ~ 60254724 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953421.1
TGAACCAATAACTATAAACGTGGACATTTCTATTGTAGCATGATCATTGTCTGCTTTACATGAACGCTGAGAGAGCCATCCCCCAGATGTAATACATTAGAATGCATGCTCCTTCTTGGGCTGAAAAACAAACCAATGAAGTTCCTCTGTTGTGTGTGaAGTAAACTCAGAGTTCGTCCACGTTCCGTCCGTGCTCAATGGCGTCAAAGGgaagtccctcctcctctccgtgGAGACTCACTTTCAAAATGAGGATGTTGAGATCCAGGGCAGCTGGTACCAGACCCGGCCGGGGGGCCCCAAAACCCTCCTGGTGACCTTCCacaaccacacagccatcatggTGGCATCCATGAGACACAGGAACCGCTTCTTTTTCCAGCCCCCCAACGCCTCTCTCCTGATCCCCAGGCTGGACGAGGCGGCGGAGGGGGACTATCACCTGGACCTGGATATTCACTTCCCCCAGAGACAGGAGCTCGTCAGAGTCGAGAGGACCATCCATGTCACTGTAGATGtACCCGTGTCCACTCCTGTTATCAGGAAGACCCCATCTTCTACAGTTGTTGAGGACAAGGAGAACGTGACGTGGACCTGCTGGGTGGAGAACGGGACCAGGGTTCAGTACCAGTGGCTGAGGAACAACATGCCCCTAGATGCTAGTGATCGCCATCAGTTCTCACAGGATAACTCTACTCTGGTGATAAATCCTGTGAGGAAGAAGGACATTGGACAGTACCGCTGCCTGGCCAGGAACCACATCAGCCAGAGACAGAGCCACACCCTGGACCTTAATGTATTCTATGGTCCTTACAACCTGGCTGTAAAGTCTGACCATGGCCTGAGGACCGGGGAGGTCTTCACAGTGAACCCTGGTGAGCTGGTGTTCTTCGACTGTCAGGCCGACTCCAACCCTCCCAACAGCTGTATGTGGATCTCTAAGACCAACAACGCCACTGAGGTCATCACTGTGGGACTGCGCCTGGAGGTCACCTCATACAAGCTGGCCCAGGCCGAGGAGTTCCTGTGCAGGGCGTATAACAATGTGACCCAGAAGCAGGATGAGACCCAGTTCACCCTGGTGGTGGCCAGCCTGGGGACAGGAAAGGAGAGATATGTCCAGGAGAGCAACTCATTCTCTCCTCTGGCTGCCATcactctgtcctgtctgttcATTACTGGCTGTATGTTACTGGTCTACTTCATAAAGACCTGTCATCATCCCAAGAGAGTTCTCATGAACATCTATAACAGACCTTTGACTGAACCGAAGCGCCCACACTGTTCAGGTCATGAGGATGCAACTGAAGACTTTGGCATCTATGAGTTTGTCTCTATACCTGGGAAAATGGAATCTACACAGGCATCAAGCAGATCTCTGGCACACCTAGAGTCTGTCCAGGATTTGCATACCACCATCTATGATGTCATTCGGCACATCCCTGAAACTCCCACCCTGGCTAACCAAAGTCTGCTGTTGAAGCAGTGTGAAGCCTAACTAAGAGACCAGAATATTATTAAAGATACTTTCTGAGTCCCCAAGTGGAACCATATTCTCTGTAtaatgcactatttttgaccaaagccctatttctagatagggaatagggtgccatttgggacacagtaaaCATTGTGTAAATGAACTCCAGTGAGGTTTTCCTCCTGACAAGTGTACATACCTTCACCAAAGTCCCAATCACTTCTCTGAAATCCCATGGACATTATTAATCAATGGATGAATCCAAAGAGCTTTAATGTGTGAATAAGATATACTGTATTTTTCTCTTGTGCTAtttcaagctctctctctctggaagtgGGCAAGTGGGCAAGTATGAATGAATTATCACATTGCAAGCGAGATACTGTCTGATGGCTGTGTTGTCAAACATAATTTTTTAGCATGTAAAtacatctattctacagtgcatgCTATTACTTTCTTTTTCTTCAAGaaattacattttgttttactgaaTAAGTCCTATTTATTTCCAAGTAAACGGATGATGGTCCTCTCTTTCTGATGTAGCATTTTTTATCTTGACATTGTCAAATACACTCCATCGGAGGTTGAAATGCCAGGTGTGCTGTTGCCTGTCTGCAAAGTATCGTACAGTTTCCTGATACAGATATGTGCTTTTTGGATTTTAATAAAGATTTATAACAATTTGA
>XM_036953420.1
TCTGAACCAATAACTATAAACGTGGACATTTCTATTGTAGCATGATCATTGTCTGCTTTACATGAACGCTGAGAGAGCCATCCCCCAGATGTAATACATTAGAATGCATGCTCCTTCTTGGGCTGAAAAACAAACCAATGAAGTTCCTCTGTTGTGTGTGTCTCAAGTCAGAGAGGACAACTCCTCAGAGGATAATGGAGGCTCCTGGAAGAAGGACCTTTGTCGCTCTGTGTTTCTACACTGCACTACTTACTCTCTCAGaAGTAAACTCAGAGTTCGTCCACGTTCCGTCCGTGCTCAATGGCGTCAAAGGgaagtccctcctcctctccgtgGAGACTCACTTTCAAAATGAGGATGTTGAGATCCAGGGCAGCTGGTACCAGACCCGGCCGGGGGGCCCCAAAACCCTCCTGGTGACCTTCCacaaccacacagccatcatggTGGCATCCATGAGACACAGGAACCGCTTCTTTTTCCAGCCCCCCAACGCCTCTCTCCTGATCCCCAGGCTGGACGAGGCGGCGGAGGGGGACTATCACCTGGACCTGGATATTCACTTCCCCCAGAGACAGGAGCTCGTCAGAGTCGAGAGGACCATCCATGTCACTGTAGATGtACCCGTGTCCACTCCTGTTATCAGGAAGACCCCATCTTCTACAGTTGTTGAGGACAAGGAGAACGTGACGTGGACCTGCTGGGTGGAGAACGGGACCAGGGTTCAGTACCAGTGGCTGAGGAACAACATGCCCCTAGATGCTAGTGATCGCCATCAGTTCTCACAGGATAACTCTACTCTGGTGATAAATCCTGTGAGGAAGAAGGACATTGGACAGTACCGCTGCCTGGCCAGGAACCACATCAGCCAGAGACAGAGCCACACCCTGGACCTTAATGTATTCTATGGTCCTTACAACCTGGCTGTAAAGTCTGACCATGGCCTGAGGACCGGGGAGGTCTTCACAGTGAACCCTGGTGAGCTGGTGTTCTTCGACTGTCAGGCCGACTCCAACCCTCCCAACAGCTGTATGTGGATCTCTAAGACCAACAACGCCACTGAGGTCATCACTGTGGGACTGCGCCTGGAGGTCACCTCATACAAGCTGGCCCAGGCCGAGGAGTTCCTGTGCAGGGCGTATAACAATGTGACCCAGAAGCAGGATGAGACCCAGTTCACCCTGGTGGTGGCCAGCCTGGGGACAGGAAAGGAGAGATATGTCCAGGAGAGCAACTCATTCTCTCCTCTGGCTGCCATcactctgtcctgtctgttcATTACTGGCTGTATGTTACTGGTCTACTTCATAAAGACCTGTCATCATCCCAAGAGAGTTCTCATGAACATCTATAACAGACCTTTGACTGAACCGAAGCGCCCACACTGTTCAGGTCATGAGGATGCAACTGAAGACTTTGGCATCTATGAGTTTGTCTCTATACCTGGGAAAATGGAATCTACACAGGCATCAAGCAGATCTCTGGCACACCTAGAGTCTGTCCAGGATTTGCATACCACCATCTATGATGTCATTCGGCACATCCCTGAAACTCCCACCCTGGCTAACCAAAGTCTGCTGTTGAAGCAGTGTGAAGCCTAACTAAGAGACCAGAATATTATTAAAGATACTTTCTGAGTCCCCAAGTGGAACCATATTCTCTGTAtaatgcactatttttgaccaaagccctatttctagatagggaatagggtgccatttgggacacagtaaaCATTGTGTAAATGAACTCCAGTGAGGTTTTCCTCCTGACAAGTGTACATACCTTCACCAAAGTCCCAATCACTTCTCTGAAATCCCATGGACATTATTAATCAATGGATGAATCCAAAGAGCTTTAATGTGTGAATAAGATATACTGTATTTTTCTCTTGTGCTAtttcaagctctctctctctggaagtgGGCAAGTGGGCAAGTATGAATGAATTATCACATTGCAAGCGAGATACTGTCTGATGGCTGTGTTGTCAAACATAATTTTTTAGCATGTAAAtacatctattctacagtgcatgCTATTACTTTCTTTTTCTTCAAGaaattacattttgttttactgaaTAAGTCCTATTTATTTCCAAGTAAACGGATGATGGTCCTCTCTTTCTGATGTAGCATTTTTTATCTTGACATTGTCAAATACACTCCATCGGAGGTTGAAATGCCAGGTGTGCTGTTGCCTGTCTGCAAAGTATCGTACAGTTTCCTGATACAGATATGTGCTTTTTGGATTTTAATAAAGATTTATAACAATTTGA

Function

NR:

description
HEPACAM family member 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953421.1 False 2178 mRNA 0.47 9 60201948 60254722
XM_036953420.1 True 2281 mRNA 0.47 10 60201948 60254724
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110496641 vps50 coding downstream 1406 60018634 ~ 60200664 (-)
LOC110496642 vps50 coding downstream 269858 59906906 ~ 59932090 (-)
LOC110496637 gng11 coding downstream 463355 59712624 ~ 59738593 (-)
LOC110496638 gng11 coding downstream 503784 59696846 ~ 59698164 (-)
zgc:85777 ivd coding downstream 505562 59647948 ~ 59696386 (-)
LOC110496648 NA coding upstream 117794 60372518 ~ 60374871 (-)
LOC110496650 elmo1 coding upstream 170325 60425049 ~ 60603918 (-)
LOC110496651 NA coding upstream 361532 60610487 ~ 60642154 (-)
c18h18orf21 cssa27h18orf21 coding upstream 390886 60645610 ~ 60670570 (-)
elp2 elp2 coding upstream 1012557 61267281 ~ 61323861 (-)
G1568911 NA non-coding downstream 5299 60196449 ~ 60196649 (-)
G1568898 NA non-coding downstream 19657 60182028 ~ 60182291 (-)
G1568897 NA non-coding downstream 21979 60179738 ~ 60179969 (-)
G1568892 NA non-coding downstream 25614 60175909 ~ 60176334 (-)
G1569209 NA non-coding upstream 16334 60271058 ~ 60271283 (-)
G1569211 NA non-coding upstream 18520 60273244 ~ 60273456 (-)
G1569212 NA non-coding upstream 19402 60274126 ~ 60274361 (-)
G1569214 NA non-coding upstream 20465 60275189 ~ 60275393 (-)
G1569215 NA non-coding upstream 20723 60275447 ~ 60275684 (-)
G1568017 NA other downstream 1044904 59155028 ~ 59157044 (-)
G1567931 NA other downstream 1127300 59004845 ~ 59074648 (-)
G1567871 LOC106588914 other downstream 1328257 58870937 ~ 58873691 (-)
G1567875 NA other downstream 1331941 58869363 ~ 58870007 (-)
G1569258 NA other upstream 94052 60348776 ~ 60350759 (-)
G1569277 NA other upstream 125129 60379853 ~ 60389092 (-)
G1569439 NA other upstream 438654 60693378 ~ 60694099 (-)
G1570468 NA other upstream 1036580 61291304 ~ 61293151 (-)

Expression

LOC110496644(LOC106588945) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110496644(LOC106588945) Expression in each Bioproject

Bar chart with 21 bars.
LOC110496644(LOC106588945) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network