LOC110496648


Basic Information

Item Value
gene id LOC110496648
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 60372518 ~ 60374871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469584.2
TACTTCGGGTTTGGGTTTTGTTGTCATTAGCAAACATGGCGGCGCCCATCAACAGCTGAAGTTGGAGCACTCCAGAGGTTTATAAACACCATGAGCAACACAATGTGTGCCCCTCGCGAACAAATTATAGAAAATGAAGAAGACCTAAAGAAGTTAAGGTTTGTGTAGAAGGGCTGGATGATGACCCTGCAGAGGAATTCAGAGGTCTACCTCATCAAGTTCCAGAAACTCACCAGTGCAAGGGCAGCCAAAAGGCACATGGATGAGAAGAGTTTCTTTGGAGGTTTACTACATGTGCTATGCCCCAGAGTATGAGACAGTGGAGAACACCAGATTAAAGCTGCAAGACGGAAGATATGTGAATAGGACGGCTCAAAATAAAGAACAGGACCAGGGGGATGAAGAGAAAAAAGCCCATGTCTTCAGATACATTTGCTACCACAGCCAGGACTTCTTAAGGTAGCATCAGTTCCTGAAGTCAAGCCAACAGAGAAGAAGACAAAGCCAGGAAAGCCTCGGAAGATAATCTAACAGGGAAAAGGAAAgggtgatacctagtcagttgtccaactgaatgtattcaactgaaatgtgtcttcctcatttaacccaacccctctgaatcagagaggtgcggagggctgccttaattgacatccacgtcttcgccgcctggggaacagtgggttaactgccttgctcaggggcagaacagactCCATGTTCCGAAACGGACATTATCACACAGAAGATAATGCATACAAGTTCCTAGACTTTACACCAATTAGACAGTACTTCATCTTTTCTCGACATGTTTTATTTGTATATTTCCCATCAGAGTATAAGaagtgtttttatatatatttgcagTTTCATGAAAATGAATAAAGTAGTGTTGTCCTTAA
>XR_002469583.2
ACTACTTCGGGTTTGGGTTTTGTTGTCATTAGCAAACATGGCGGCGCCCATCAACAGCTGAAGTTGGAGCACTCCAGAGGTTTATAAACACCATGAGCAACACAATGTGTGCCCCTCGCGAACAAATTATAGAAAATGAAGAAGACCTAAAGAAGTTAAGGTGTACACCATCAACTTGGAGTCTCATTACCTGGCAGTGTAAGAAGCCCCAGCCATTGGGGTGATGACAGAACTAATCCAGCTCTCTGCGCTGTACAGGTTTGTGTAGAAGGGCTGGATGATGACCCTGCAGAGGAATTCAGAGGTCTACCTCATCAAGTTCCAGAAACTCACCAGTGCAAGGGCAGCCAAAAGGCACATGGATGAGAAGAGTTTCTTTGGAGGTTTACTACATGTGCTATGCCCCAGAGTATGAGACAGTGGAGAACACCAGATTAAAGCTGCAAGACGGAAGATATGTGAATAGGACGGCTCAAAATAAAGAACAGGACCAGGGGGATGAAGAGAAAAAAGCCCATGTCTTCAGATACATTTGCTACCACAGCCAGGACTTCTTAAGGTAGCATCAGTTCCTGAAGTCAAGCCAACAGAGAAGAAGACAAAGCCAGGAAAGCCTCGGAAGATAATCTAACAGGGAAAAGGAAAgggtgatacctagtcagttgtccaactgaatgtattcaactgaaatgtgtcttcctcatttaacccaacccctctgaatcagagaggtgcggagggctgccttaattgacatccacgtcttcgccgcctggggaacagtgggttaactgccttgctcaggggcagaacagactCCATGTTCCGAAACGGACATTATCACACAGAAGATAATGCATACAAGTTCCTAGACTTTACACCAATTAGACAGTACTTCATCTTTTCTCGACATGTTTTATTTGTATATTTCCCATCAGAGTATAAGaagtgtttttatatatatttgcagTTTCATGAAAATGAATAAAGTAGTGTTGTCCTTAA
>XR_002469585.2
ACTACTTCGGGTTTGGGTTTTGTTGTCATTAGCAAACATGGCGGCGCCCATCAACAGCTGAAGTTGGAGCACTCCAGAGGTTTATAAACACCATGAGCAACACAATGTGTGCCCCTCGCGAACAAATTATAGAAAATGAAGAAGACCTAAAGAAGTTAAGGTGTACACCATCAACTTGGAGTCTCATTACCTGGCAGTGTAAGAAGCCCCAGCCATTGGGGTGATGACAGAACTAATCCAGCTCTCTGCGCTGTACAGGTTTGTGTAGAAGGGCTGGATGATGACCCTGCAGAGGAATTCAGAGGTCTACCTCATCAAGTTCCAGAAACTCACCAGTGCAAGGGCAGCCAAAAGGCACATGGATGAGAAGAGTTTCTTTGGAGGTTTACTACATGTGCTATGCCCCAGAGTATGAGACAGTGGAGAACACCAGATTAAAGCTGCAAGACGGAAGATATGTGAATAGGACGGCTCAAAATAAAGAACAGGACCAGGGGGATGAAGAGAAAAAAGCCCATGTCTTCAGATACATTTGCTACCACAGCCAGGACTTCTTAAGGTGATGATCAGAGATCCACTGATACCGGCAATCTGTAGCATCAGTTCCTGAAGTCAAGCCAACAGAGAAGAAGACAAAGCCAGGAAAGCCTCGGAAGATAATCTAACAGGGAAAAGGAAAgggtgatacctagtcagttgtccaactgaatgtattcaactgaaatgtgtcttcctcatttaacccaacccctctgaatcagagaggtgcggagggctgccttaattgacatccacgtcttcgccgcctggggaacagtgggttaactgccttgctcaggggcagaacagactCCATGTTCCGAAACGGACATTATCACACAGAAGATAATGCATACAAGTTCCTAGACTTTACACCAATTAGACAGTACTTCATCTTTTCTCGACATGTTTTATTTGTATATTTCCCATCAGAGTATAAGaagtgtttttatatatatttgcagTTTCATGAAAATGAATAAAGTAGTGTTGTCCTTAA
>TU1795485
GGCGGCGCCCATCAACAGCTGAAGTTGGAGCACTCCAGAGGTTTATAAACACCATGAGCAACACAATGTGTGCCCCTCGCGAACAAATTATAGAAAATGAAGAAGACCTAAAGAAGTTAAGGTTTGTGTAGAAGGGCTGGATGATGACCCTGCAGAGGAATTCAGAGGTCTACCTCATCAAGTTCCAGAAACTCACCAGTGCAAGGGCAGCCAAAAGGCACATGGATGAGAAGAGTTTCTTTGGAGGTTTACTACATGTGCTATGCCCCAGAGTATGAGACAGTGGAGAACACCAGATTAAAGCTGCAAGACGGAAGATATGTGAATAGGACGGCTCAAAATAAAGAACAGGACCAGGGGGATGAAGAGAAAAAAGCCCATGTCTTCAGATACATTTGCTACCACAGCCAGGACTTCTTAAGGTAGCATCAGTTCCTGAAGTCAAGCCAACAGAGAAGAAGACAAAGCCAGGAAAGCCTCGGAAGATAATCTAACAGGGAAAAGGAAAgggtgatacctagtcagttgtccaactgaatgtattcaactgaaatgtgtcttcctcatttaacccaacccctctgaatcagagaggtgcggagggctgccttaattgacatccacgtcttcgccgcctggggaacagtgggttaactgccttgctcaggggcagaac
>TU1795486
GGCGGCGCCCATCAACAGCTGAAGTTGGAGCACTCCAGAGGTTTATAAACACCATGAGCAACACAATGTGTGCCCCTCGCGAACAAATTATAGAAAATGAAGAAGACCTAAAGAAGTTAAGGTGTACACCATCAACTTGGAGTCTCATTACCTGGCAGTGTAAGAAGCCCCAGCCATTGGGGTGATGACAGAACTAATCCAGCTCTCTGCGCTGTACAGGTTTGTGTAGAAGGGCTGGATGATGACCCTGCAGAGGAATTCAGAGGTCTACCTCATCAAGTTCCAGAAACTCACCAGTGCAAGGGCAGCCAAAAGGCACATGGATGAGAAGAGTTTCTTTGGAGGTTTACTACATGTGCTATGCCCCAGAGTATGAGACAGTGGAGAACACCAGATTAAAGCTGCAAGACGGAAGATATGTGAATAGGACGGCTCAAAATAAAGAACAGGACCAGGGGGATGAAGAGAAAAAAGCCCATGTCTTCAGATACATTTGCTACCACAGCCAGGACTTCTTAAGGTAGCATCAGTTCCTGAAGTCAAGCCAACAGAGAAGAAGACAAAGCCAGGAAAGCCTCGGAAGATAATCTAACAGGGAAAAGGAAAgggtgatacctagtcagttgtccaactgaatgtattcaactgaaatgtgtcttcctcatttaacccaacccctctgaatcagagaggtgcggagggctgccttaattgacatccacgtcttcgccgcctggggaacagtgggttaactgccttgctcaggggcagaac

Function

NR:

description
RNA-binding protein 48-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469584.2 False 905 mRNA 0.43 5 60372518 60374869
XR_002469583.2 False 1005 mRNA 0.44 5 60372518 60374871
XR_002469585.2 False 1039 mRNA 0.44 5 60372518 60374871
TU1795485 False 676 lncRNA 0.47 5 60372710 60374832
TU1795486 True 774 lncRNA 0.48 5 60372710 60374832

Neighbor

gene id symbol gene type direction distance location
LOC110496644 LOC106588945 coding downstream 117794 60201948 ~ 60254724 (-)
LOC110496641 vps50 coding downstream 171976 60018634 ~ 60200664 (-)
LOC110496642 vps50 coding downstream 440428 59906906 ~ 59932090 (-)
LOC110496637 gng11 coding downstream 633925 59712624 ~ 59738593 (-)
LOC110496638 gng11 coding downstream 674354 59696846 ~ 59698164 (-)
LOC110496650 elmo1 coding upstream 50178 60425049 ~ 60603918 (-)
LOC110496651 NA coding upstream 241385 60610487 ~ 60642154 (-)
c18h18orf21 cssa27h18orf21 coding upstream 270739 60645610 ~ 60670570 (-)
elp2 elp2 coding upstream 892410 61267281 ~ 61323861 (-)
LOC110496657 LOC106588974 coding upstream 1104157 61479028 ~ 61493313 (-)
G1569173 NA non-coding downstream 89938 60281305 ~ 60282580 (-)
G1569215 NA non-coding downstream 96834 60275447 ~ 60275684 (-)
G1569214 NA non-coding downstream 97125 60275189 ~ 60275393 (-)
G1569212 NA non-coding downstream 98157 60274126 ~ 60274361 (-)
G1569211 NA non-coding downstream 99062 60273244 ~ 60273456 (-)
G1569273 NA non-coding upstream 2104 60376975 ~ 60383390 (-)
G1569274 NA non-coding upstream 3118 60377989 ~ 60384352 (-)
G1569276 NA non-coding upstream 4043 60378914 ~ 60387859 (-)
G1569290 NA non-coding upstream 29189 60404060 ~ 60404542 (-)
G1569299 NA non-coding upstream 39322 60414193 ~ 60424693 (-)
G1569258 NA other downstream 21759 60348776 ~ 60350759 (-)
G1569198 NA other downstream 121149 60241931 ~ 60251369 (-)
G1568017 NA other downstream 1215474 59155028 ~ 59157044 (-)
G1567931 NA other downstream 1297870 59004845 ~ 59074648 (-)
G1569277 NA other upstream 4982 60379853 ~ 60389092 (-)
G1569439 NA other upstream 318507 60693378 ~ 60694099 (-)
G1570468 NA other upstream 916433 61291304 ~ 61293151 (-)

Expression


Co-expression Network