Item | Value |
---|---|
gene id | LOC110496650 |
gene name | elmo1 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048582.1 |
NCBI id | CM023236.2 |
chromosome length | 74657750 |
location | 60425049 ~ 60603918 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
elmo1 | Predicted to enable SH3 domain binding activity. Acts upstream of or within cilium assembly; lymphangiogenesis; and positive regulation of angiogenesis. Predicted to be located in cytoplasm. Predicted to be part of guanyl-nucleotide exchange factor complex. Predicted to be active in plasma membrane. Is expressed in several structures, including blood vessel; immature eye; mesoderm; nervous system; and pronephric tubule. Orthologous to human ELMO1 (engulfment and cell motility 1). |
description |
---|
PREDICTED: engulfment and cell motility protein 1 isoform X5 |
id | name | namespace |
---|---|---|
GO:0006909 | phagocytosis | biological_process |
GO:0005856 | cytoskeleton | cellular_component |
id | description |
---|---|
K12366 | ELMO1, CED12; engulfment and cell motility protein 1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036953434.1 | False | 2493 | mRNA | 0.45 | 7 | 60425049 | 60470121 |
XM_036953430.1 | False | 3949 | mRNA | 0.47 | 23 | 60425049 | 60568860 |
XM_036953431.1 | False | 3956 | mRNA | 0.47 | 24 | 60425049 | 60603916 |
XM_036953429.1 | False | 3827 | mRNA | 0.47 | 23 | 60425049 | 60603918 |
XM_036953432.1 | False | 3791 | mRNA | 0.47 | 22 | 60425049 | 60603918 |
XM_036953433.1 | False | 3785 | mRNA | 0.47 | 22 | 60425049 | 60603918 |
XM_036953435.1 | True | 3749 | mRNA | 0.47 | 21 | 60425049 | 60603918 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110496648 | NA | coding | downstream | 50178 | 60372518 ~ 60374871 (-) |
LOC110496644 | LOC106588945 | coding | downstream | 170325 | 60201948 ~ 60254724 (-) |
LOC110496641 | vps50 | coding | downstream | 224507 | 60018634 ~ 60200664 (-) |
LOC110496642 | vps50 | coding | downstream | 492959 | 59906906 ~ 59932090 (-) |
LOC110496637 | gng11 | coding | downstream | 686456 | 59712624 ~ 59738593 (-) |
LOC110496651 | NA | coding | upstream | 12338 | 60610487 ~ 60642154 (-) |
c18h18orf21 | cssa27h18orf21 | coding | upstream | 41692 | 60645610 ~ 60670570 (-) |
elp2 | elp2 | coding | upstream | 663363 | 61267281 ~ 61323861 (-) |
LOC110496657 | LOC106588974 | coding | upstream | 875110 | 61479028 ~ 61493313 (-) |
LOC110496659 | LOC106588970 | coding | upstream | 941741 | 61545659 ~ 61587847 (-) |
G1569299 | NA | non-coding | downstream | 356 | 60414193 ~ 60424693 (-) |
G1569290 | NA | non-coding | downstream | 20507 | 60404060 ~ 60404542 (-) |
G1569276 | NA | non-coding | downstream | 37190 | 60378914 ~ 60387859 (-) |
G1569274 | NA | non-coding | downstream | 40697 | 60377989 ~ 60384352 (-) |
G1569273 | NA | non-coding | downstream | 41659 | 60376975 ~ 60383390 (-) |
G1569410 | NA | non-coding | upstream | 21862 | 60625780 ~ 60631951 (-) |
G1569430 | LOC106588954 | non-coding | upstream | 121491 | 60725409 ~ 60728216 (-) |
G1569467 | LOC106588954 | non-coding | upstream | 136321 | 60740239 ~ 60741809 (-) |
G1569466 | LOC100846954 | non-coding | upstream | 138128 | 60742046 ~ 60743190 (-) |
G1569277 | NA | other | downstream | 35957 | 60379853 ~ 60389092 (-) |
G1569258 | NA | other | downstream | 74290 | 60348776 ~ 60350759 (-) |
G1569198 | NA | other | downstream | 173680 | 60241931 ~ 60251369 (-) |
G1568017 | NA | other | downstream | 1268005 | 59155028 ~ 59157044 (-) |
G1569439 | NA | other | upstream | 89460 | 60693378 ~ 60694099 (-) |
G1570468 | NA | other | upstream | 687386 | 61291304 ~ 61293151 (-) |
G1570695 | NA | other | upstream | 1061410 | 61665328 ~ 61665910 (-) |