c18h18orf21 (cssa27h18orf21)


Basic Information

Item Value
gene id c18h18orf21
gene name cssa27h18orf21
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 60645610 ~ 60670570 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572670.2
TGGGTTGAACGGGGTATCATACAAATTAATCGAACTACAGCCAGTGAGGCACACAGGGCTATTCCTCGCTTTCCCATAATGCTTGCGCTTAGCCTGAAGCATTGTGGGATTGCAACATTAGGACGGAAAGTGTAGGAGGTTAAACAAGGCGGCCAGGAAGCGACCAGCCTTTCTCACACGCGGATTCTCGAGTCGGTGGCAAATACAGAGAAACATGGCTTTTACAGACCCCACAGGCTCAAGTCACACGTTTTTAAGGGATGCATCGCTACTGTATCAAGACATTTGTCCGGAGCAGTCACGTTTTCTCATGGGGAGACATCAGAGAATGAAAGctccAGCCAAGTTCCAGCCCATCCCTGAAGAAGAGCTCTGTCCCTTCTGTTTCCAGTGGCGTCGCCCAGACAACCACCGCATGCGGCTGCATCCCAAGCGGCGTGCATCAGTGAGGGTGCAGAGCGTGTTGCGGAGGGAGGGCAAGGGCATGAGGCTCAGCCTGGCTCAGATGGACATCTTACGGAGGTTCAGGGGCTCCTCATCAGCTCTGGTGGTTACATGCCACACCTGTAACAGCACGTCCAAGCATAACGGCGTCAACAGGAACTTCATAGCCACTCTCTCCAAGAGCCACTGCACCCCCTGGAGCGCAGGCAAACACAAGACTCCCCAGTCCACCAACAGAACCAACGCCATGGGCATCCCAAAGTCTGCCTCCAAACACAAGACTCCCCAGTCCACCAACAGAACCAACGCCTCCAAAGACAAGACGCCCTGCAGTACGCCAAGGTCAACCTCTAAGACCCCCGGTTCCTCCTCGGCCTCAAAGCCCGCAAGTGTGCAGAAGTTGGCCTTCTCCCGCCTCAAGAGGTTCCTCATGCTGGAGGACAACCAAAAGACCAAGACCAAGGGAGGACTCAAagatttcctctcctccctctgaatGACTGACAAACACTGGGCTCCGTTGCATGGGCCCAAGAGTCAGCCATGACACTGAACCAGTCTCTCTCTGGCCTGCTTAGAATGGTCCTGCTGGAATTCAGAACAACAAGGCTATAGGGGGGAGGAGTCGGCTGTCAGTCAATAAGCGCCACAGCGCCACCTGTTGAGAGAATTAAAGGGGCATGTTATTTTTCTTCTTCACATGCCACCCCCCAACTGCCCCTGAGGTCCCCCTTCTGTAGAGCTGTCCCAACTGGGAATGGTCCCACATCACTCAGGAATTCCACTGTCCCAATTGGATGGTGGGAGTGGCATCGGATGGCAAAGCTCACCCCTCTCTTCCATGGCATTTATGATGAGGCAAGCAAAATAAATTGTTTGGAGTTATAGGATGTTTTGATTTGAGAGGGTGATTTTTATTTGTTACAATCACATTTATGATAAATAGGACTTAGTTAATGCTTGAGTTTCATACTACTTTATTACTTGGTTGTTGTCCTCTGGTTTTCATTTTTTTCTGGGTTTATTTTGGGGAACTCCACAGGGCATGTCTTCTTGAAACTGTCCCTCTTGTTAGATCACCAGCCAGGTAGGGCTGATCATTTGTTACCATCTTATGATCACTGTGCCAAACACATGTTTGTTTACTGATGGTTTTGAGAATCATATTTGGGTGAATCGGACACAGGCGATAGGCCTGAAACTTGTGATGCGATTTAACtacattttaattttattttacagTAGTTCTGTTTCTTTATATTGATGGTTTTCATTTTTTACCTGTTAGTAAGTTCATATTCACAATACTATTAGACTGCATGTTGTAATGGCTGCTTTGATCCAACACAATTTATAACAAAGATTTTCTTTGGTTGTAATTAATCCAATGTGTGGGTCTGTATCATTGCATATAATCCTGAATTACCTCACATTTATATTCCTTTGCTTTGCTTCTCTGAAATAAACTTTCTCAATTGAAATA

Function

NR:

description
UPF0711 protein C18orf21 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572670.2 True 1927 mRNA 0.47 6 60645610 60670570

Neighbor

gene id symbol gene type direction distance location
LOC110496651 NA coding downstream 3456 60610487 ~ 60642154 (-)
LOC110496650 elmo1 coding downstream 41692 60425049 ~ 60603918 (-)
LOC110496648 NA coding downstream 270739 60372518 ~ 60374871 (-)
LOC110496644 LOC106588945 coding downstream 390886 60201948 ~ 60254724 (-)
LOC110496641 vps50 coding downstream 445068 60018634 ~ 60200664 (-)
elp2 elp2 coding upstream 596711 61267281 ~ 61323861 (-)
LOC110496657 LOC106588974 coding upstream 808458 61479028 ~ 61493313 (-)
LOC110496659 LOC106588970 coding upstream 875089 61545659 ~ 61587847 (-)
LOC110496662 LOC106588967 coding upstream 1019481 61690051 ~ 61708402 (-)
hsf1a hsf1a coding upstream 1126442 61797012 ~ 61828577 (-)
G1569410 NA non-coding downstream 13659 60625780 ~ 60631951 (-)
G1569338 NA non-coding downstream 162530 60481739 ~ 60483080 (-)
G1569333 NA non-coding downstream 170492 60474755 ~ 60475118 (-)
G1569314 NA non-coding downstream 194165 60450629 ~ 60451445 (-)
G1569430 LOC106588954 non-coding upstream 54839 60725409 ~ 60728216 (-)
G1569467 LOC106588954 non-coding upstream 69669 60740239 ~ 60741809 (-)
G1569466 LOC100846954 non-coding upstream 71476 60742046 ~ 60743190 (-)
G1569465 NA non-coding upstream 72775 60743345 ~ 60744221 (-)
G1569475 NA non-coding upstream 82922 60753492 ~ 60755163 (-)
G1569277 NA other downstream 256518 60379853 ~ 60389092 (-)
G1569258 NA other downstream 294851 60348776 ~ 60350759 (-)
G1569198 NA other downstream 394241 60241931 ~ 60251369 (-)
LOC110496637 gng11 other downstream 908830 59712624 ~ 59738593 (-)
G1569439 NA other upstream 22808 60693378 ~ 60694099 (-)
G1570468 NA other upstream 620734 61291304 ~ 61293151 (-)
G1570695 NA other upstream 994758 61665328 ~ 61665910 (-)
G1572487 NA other upstream 2765228 63435798 ~ 63491169 (-)

Expression


Co-expression Network