elp2 (elp2)


Basic Information

Item Value
gene id elp2
gene name elp2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 61267281 ~ 61323861 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953440.1
TACGGTAACTCTACCGGTTAGCATACAAGATGGCGGCTCCCATAATAGAAACATGTCATGTCGCATGTTGTGCAAATCGAACCCCAAATGTTCTTTCATGGGGTCGTGGGGGGCTCATTGCTTATGGAACATGCAATTCTGTCGCTCTCTATGACCCACAGGAGAAGTGTGTTGTTGCTGTCCTCAATGGACATACCGGGAGGGTGAACACAGTCCAGTGGGTCCACAGAGAGGACTGTGGTAGAGAAACTCACCTGGTGTCAGGAGGGTCTGACAGTCTAATGATTGTGTGGGAGGCCCATGATGGAAAGTTTAAACAGTATGTTGAGTGTGTTGGGCATACTGGACCAGTGTGTGCTGTGGATGCCATCCACCTGGACAACAATAAGCTACTCATTGCCTCCACAGCCTCCGACTCCACTGTAAAACTATGGCTCTACACTGGGAGTAAAGCGGAGTGCACCCATACCATATCCTTTGGGAGCGGGTTTATGATGGATGTCTCGCTAGCGTGGTTGCCAGGCAGCAGAGTTCCCATACTTGCCTGCGGGGGCGACGATTGCAGAATCCATTTGTATGCACAGTGCAATGGACAGTTCAGGAAAGTCCTCTCCTTGCAAGGGCATGAGGATTGGATCCGTGGTGTGGAGTGGGCCTGTGTAGACGGGGATCTGTTACTGGCCAGCTGTGCTCAGGATTGTCTGATCCGGGTTTGGAGGCTGGTTGCCAAGTCTAGGACGAAGAGAAACGCGCAGGAAGAACGCACCATTAGGATGTCTGAAGATGTCTTTACACTGACACAGAACGATGCGTCCTCAGCATTTGCAGTGACGCTAGAGTCAGTCCTTGCCGGCCACGAGAACAAGGTCTATGGAGTCCACTGGCAGCCCCCTGTCATCAAAGGTGGCGACCAGCACCAGGCTCTGAGCCTGCTCTCTGCTTCCATGGACAAGACCATGATCCTGTGGGCTCAGGAGGAAGGCTCAGGGGTGTGGGTGGAGCAGgTGCGTGTAGGGGAGGTGGGGGGAAACACACTGGGTTTCTACGGTTGTCAGATGAGTCCAGACGGATCCATGATCCTGGCCCATGCCTTCCACGGAGCGCTGCATCTCTGGACCCAGAGCCACGGCAAAGAGGGAGAGTGGAGACCAGGGGTGGTGATATCTGGTCACTTCAACGCAGTTCAGGACCTGAGCTGGGACCCTGAGGGGGAATTCATCCTCAGTGTGGGGTCAGATCAGACCACCAGGCTACTAACACCCTGGAAGAGGATGGACCAAACACAGCCTACCTGGCACGAGATCTCTCGCCCCCAGATCCACGGCTATGACATGCAGTGTCTGGCCATGGTGGGCCGCTTCCAGTACGTCTCCGGGGCCGACGAGAAGGTCCTCCGGGTGTTCCGCGCCCCCCGCAACTTTGTGGAGAACTTTGCAAACATCTCTGGCACGCCTCTGGCGAAACTGCTGGCCTCCAGTGACACTGTAGATCAACCAGAAGGGGCCAGTACCCCTGCCCTAGGTCTCTCCAACAAGGCTGTGTTTCAAGGTGATCTTACTCCCAAGACCAATGAAGAGGAGGGAACCGGGTTCAACAGTGTTTCTGACCGATACCAAGAGTCCTACTTCCACCCGCTCACCCTTAATGagCCACCGCCAGAGGACCACCTCCTTCAAAATACACTATGGCCTGAGGTCCAAAAACTgtatGGACATGGCTTTGAGATGTTCTGTCTGGCGTCTGACAGTGGGAGGACGGTGGTGGCTTCGGCATGTAAGGCCTCTAAGGCTGAGCATGCGGCCGTGCTGCTCTGGAGCTCCACTTCCTGGCGCCAGCTACAGGCACTGCCCTGCCACAGCCTCACTGTCACCCAGATGGCCTTCTCTCCCAATGGACTGTTCCTATTGGCCGTGTCCCGGGACAGGACCTGGTCGCTATGGAAACGGGACGACCCCGCCGCCACCCCTACAAACACAGAGCCCCATTTCTCCCTGTACACATCTACCAGGAAGGACACGGCCGTACACACGCGCATCATATGGTCATGTGACTGGAGCGCCGACAACAAGTACTTTGTGACGTCAAGTCGAGACAAGAAGGTGATAGTGTGGGGTGACTGCAGTAGTTCTGAGGCCATTGTGACCCCTGATGAACCCCCAGTCATCCGGCCCTGTTCCTCCATATTAGATGTAGGAGACTCGGCCACTGCTGTCTCCTTCTGCCCCATCCTGTGCCCCGGCAACAGCTATCTGCTGGCGGTGGGGCTGGAGAGTGGCCAGGTCCTGCTGTATAAGTGGGAACTCAGTGAGGAGCCTGCTGGAGCATCAGACTGGACCAGATATGGAGAAACAGACTCCTCTCAGAGTCACTCGCTGACGGTGAAGAGGCTGCGCTGGAGGCCGAGGGCAGGCCGAGCCGGCcagggggatgaggaggaaggCGAGGGCAGCATCACAGCAGCAGGCAGCTCCTGGGTACAGCTAGCCAGTGCAGGGGCAGACCACTCTGTCAAAATCTTCAACATCAACAGACTAGCTGTGTAGCTAGCGTTGGGCCGGAGACACTGACATCATTAGATCGTGGTATCCTGACACTGCTGACTGAGACTACAGGGCTGTCTGGAGAGGAGTGGATCAGACCTTGGGCTGGCTGTTCACTGGGTCATTCCATTCACCCTGTGTGACAACCAGCCAGCTTGCTCAGACAATATAGTCACATGGCCAGGTCTGGTGGTCTGGGGTACAGGCTGCTTTCAGGATGCCCCGAGCCcaggacttctctctctctcgatgcaGCCCTGTTCTTCCGTATTTATGCTCTTATTAAGGTCTGAGACAAGGGATATTAGGCTCACCGTTTCAACATACTTTTATGTTCATGTATTCATTTGTTAGGGTTCAGTAACTGTCAAATCAAGTCATGTTTGAAAGTCCCCTGGTTTCTTGATTACCATATATTCTTTCTTTGTGGTGTATTGCGGTCTCTTCATGTTCTGATGGCTTGAAATGTCCTTAGAAAAAAAGGACACAGTACTGCTGATACTTTTAATGTAAAATAAGTTACATTTCTGAATAAAGCTCTTTTTGTATACATA
>XM_036953441.1
TACGGTAACTCTACCGGTTAGCATACAAGATGGCGGCTCCCATAATAGAAACATGTCATGTCGCATGTTGTGCAAATCGAACCCCAAATGTTCTTTCATGGGGTCGTGGGGGGCTCATTGCTTATGGAACATGCAATTCTGTCGCTCTCTATGACCCACAGGAGAAGTGTGTTGTTGCTGTCCTCAATGGACATACCGGGAGGGTGAACACAGTCCAGTGGGTCCACAGAGAGGACTGTGGTAGAGAAACTCACCTGGTGTCAGGAGGGTCTGACAGTCTAATGATTGTGTGGGAGGCCCATGATGGAAAGTTTAAACAGTATGTTGAGTGTGTTGGGCATACTGGACCAGTGTGTGCTGTGGATGCCATCCACCTGGACAACAATAAGCTACTCATTGCCTCCACAGCCTCCGACTCCACTGTAAAACTATGGCTCTACACTGGGAGTAAAGCGGAGTGCACCCATACCATATCCTTTGGGAGCGGGTTTATGATGGATGTCTCGCTAGCGTGGTTGCCAGGCAGCAGAGTTCCCATACTTGCCTGCGGGGGCGACGATTGCAGAATCCATTTGTATGCACAGTGCAATGGACAGTTCAGGAAAGTCCTCTCCTTGCAAGGGCATGAGGATTGGATCCGTGGTGTGGAGTGGGCCTGTGTAGACGGGGATCTGTTACTGGCCAGCTGTGCTCAGGATTGTCTGATCCGGGTTTGGAGGCTGGTTGCCAAGTCTAGGACGAAGAGAAACGCGCAGGAAGAACGCACCATTAGGATGTCTGAAGATGTCTTTACACTGACACAGAACGATGCGTCCTCAGCATTTGCAGTGACGCTAGAGTCAGTCCTTGCCGGCCACGAGAACAAGGTCTATGGAGTCCACTGGCAGCCCCCTGTCATCAAAGGTGGCGACCAGCACCAGGCTCTGAGCCTGCTCTCTGCTTCCATGGACAAGACCATGATCCTGTGGGCTCAGGAGGAAGGCTCAGGGGTGTGGGTGGAGCAGgTGCGTGTAGGGGAGGTGGGGGGAAACACACTGGGTTTCTACGGTTGTCAGATGAGTCCAGACGGATCCATGATCCTGGCCCATGCCTTCCACGGAGCGCTGCATCTCTGGACCCAGAGCCACGGCAAAGAGGGAGAGTGGAGACCAGGGGTGGTGATATCTGGTCACTTCAACGCAGTTCAGGACCTGAGCTGGGACCCTGAGGGGGAATTCATCCTCAGTGTGGGGTCAGATCAGACCACCAGGCTACTAACACCCTGGAAGAGGATGGACCAAACACAGCCTACCTGGCACGAGATCTCTCGCCCCCAGATCCACGGCTATGACATGCAGTGTCTGGCCATGGTGGGCCGCTTCCAGTACGTCTCCGGGGCCGACGAGAAGGTCCTCCGGGTGTTCCGCGCCCCCCGCAACTTTGTGGAGAACTTTGCAAACATCTCTGGCACGCCTCTGGCGAAACTGCTGGCCTCCAGTGACACTGTAGATCAACCAGAAGGGGCCAGTACCCCTGCCCTAGGTCTCTCCAACAAGGCTGTGTTTCAAGGTGATCTTACTCCCAAGACCAATGAAGAGGAGGGAACCGGGTTCAACAGTGTTTCTGACCGATACCAAGAGTCCTACTTCCACCCGCTCACCCTTAATGagCCACCGCCAGAGGACCACCTCCTTCAAAATACACTATGGCCTGAGGTCCAAAAACTgtatGGACATGGCTTTGAGATGTTCTGTCTGGCGTCTGACAGTGGGAGGACGGTGGTGGCTTCGGCATGTAAGGCCTCTAAGGCTGAGCATGCGGCCGTGCTGCTCTGGAGCTCCACTTCCTGGCGCCAGCTACAGGCACTGCCCTGCCACAGCCTCACTGTCACCCAGATGGCCTTCTCTCCCAATGGACTGTTCCTATTGGCCGTGTCCCGGGACAGGACCTGGTCGCTATGGAAACGGGACGACCCCGCCGCCACCCCTACAAACACAGAGCCCCATTTCTCCCTGTACACATCTACCAGGAAGGACACGGCCGTACACACGCGCATCATATGGTCATGTGACTGGAGCGCCGACAACAAGTACTTTGTGACGTCAAGTCGAGACAAGAAGGTCATTATTCTACACCAGCAAGGCCTTAGTGTTGTTAGTAGAGGTGATAGTGTGGGGTGACTGCAGTAGTTCTGAGGCCATTGTGACCCCTGATGAACCCCCAGTCATCCGGCCCTGTTCCTCCATATTAGATGTAGGAGACTCGGCCACTGCTGTCTCCTTCTGCCCCATCCTGTGCCCCGGCAACA
>TU1796842
CATAATAGAAACATGTCATGTCGCATGTTGTGCAAATCGAACCCCAAATGTTCTTTCATGGGGTCGTGGGGGGCTCATTGCTTATGGAACATGCAATTCTGTCGCTCTCTATGACCCACAGGAGAAGTGTGTTGTTGCTGTCCTCAATGGACATACCGGGAGGGTGAACACAGTCCAGTGGGTCCACAGAGAGGACTGTGGTAGAGAAACTCACCTGGTGTCAGGAGGGTCTGACAGTCTAATGATTGTGTGGGAGGCCCATGATGGAAAGTTTAAACAGTATGTTGAGTGTGTTGGGCATACTGGACCAGTGTGTGCTGTGGATGCCATCCACCTGGACAACAATAAGCTACTCATTGCCTCCACAGCCTCCGACTCCACTGTAAAACTATGGCTCTACACTGGGAGTAAAGCGGAGTGCACCCATACCATATCCTTTGGGAGCGGGTTTATGATGGATGTCTCGCTAGCGTGGTTGCCAGGCAGCAGAGTTCCCATACTTGCCTGCGGGGGCGACGATTGCAGAATCCATTTGTATGCACAGTGCAATGGACAGTTCAGGAAAGTCCTCTCCTTGCAAGGGCATGAGGATTGGATCCGTGGTGTGGAGTGGGCCTGTGTAGACGGGGATCTGTTACTGGCCAGCTGTGCTCAGGATTGTCTGATCCGGGTTTGGAGGCTGGTTGCCAAGTCTAGGACGAAGAGAAACGCGCAGGAAGAACGCACCATTAGGATGTCTGAAGATGTCTTTACACTGACACAGAACGATGCGTCCTCAGCATTTGCAGTGACGCTAGAGTCAGTCCTTGCCGGCCACGAGAACAAGGTCTATGGAGTCCACTGGCAGCCCCCTGTCATCAAAGGTGGCGACCAGCACCAGGCTCTGAGCCTGCTCTCTGCTTCCATGGACAAGACCATGATCCTGTGGGCTCAGGAGGAAGG

Function

symbol description
elp2 Predicted to act upstream of or within tRNA wobble uridine modification. Predicted to be located in cytoplasm and nucleus. Predicted to be part of elongator holoenzyme complex and transcription elongation factor complex. Is expressed in female organism. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human ELP2 (elongator acetyltransferase complex subunit 2).

NR:

description
elongator complex protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953440.1 False 3094 mRNA 0.54 22 61267281 61323861
XM_036953441.1 False 2287 mRNA 0.55 20 61270783 61323861
TU1796842 True 942 TUCP 0.53 10 61309807 61323821

Neighbor

gene id symbol gene type direction distance location
c18h18orf21 cssa27h18orf21 coding downstream 596711 60645610 ~ 60670570 (-)
LOC110496651 NA coding downstream 625127 60610487 ~ 60642154 (-)
LOC110496650 elmo1 coding downstream 663363 60425049 ~ 60603918 (-)
LOC110496648 NA coding downstream 892410 60372518 ~ 60374871 (-)
LOC110496644 LOC106588945 coding downstream 1012557 60201948 ~ 60254724 (-)
LOC110496657 LOC106588974 coding upstream 155167 61479028 ~ 61493313 (-)
LOC110496659 LOC106588970 coding upstream 221798 61545659 ~ 61587847 (-)
LOC110496662 LOC106588967 coding upstream 366190 61690051 ~ 61708402 (-)
hsf1a hsf1a coding upstream 473151 61797012 ~ 61828577 (-)
LOC110496666 LOC106588964 coding upstream 535858 61859719 ~ 61867675 (-)
G1570016 NA non-coding downstream 9711 61254316 ~ 61257570 (-)
G1569933 NA non-coding downstream 165190 61097237 ~ 61102091 (-)
G1569484 NA non-coding downstream 494799 60772246 ~ 60772482 (-)
G1569476 NA non-coding downstream 498086 60768489 ~ 60769195 (-)
G1569475 NA non-coding downstream 512118 60753492 ~ 60755163 (-)
G1570633 NA non-coding upstream 202653 61526514 ~ 61526841 (-)
G1570649 NA non-coding upstream 264285 61588146 ~ 61588404 (-)
G1570657 NA non-coding upstream 279401 61603262 ~ 61603611 (-)
G1570661 NA non-coding upstream 285038 61608899 ~ 61609236 (-)
G1570664 NA non-coding upstream 291067 61614928 ~ 61615137 (-)
G1569439 NA other downstream 573182 60693378 ~ 60694099 (-)
G1569277 NA other downstream 878189 60379853 ~ 60389092 (-)
G1569258 NA other downstream 916522 60348776 ~ 60350759 (-)
G1569198 NA other downstream 1015912 60241931 ~ 60251369 (-)
G1570695 NA other upstream 341467 61665328 ~ 61665910 (-)
G1572487 NA other upstream 2111937 63435798 ~ 63491169 (-)
G1573054 NA other upstream 2689918 64013779 ~ 64014965 (-)
LOC110496680 LOC106589004 other upstream 2859097 64017203 ~ 64244837 (-)
G1573887 NA other upstream 3646430 64970291 ~ 64971167 (-)
G1570468 NA other downstream 16656 61291304 ~ 61293151 (-)

Expression


Co-expression Network