LOC110496657 (LOC106588974)


Basic Information

Item Value
gene id LOC110496657
gene name LOC106588974
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 61479028 ~ 61493313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572676.2
GGTCCTCCAAGCCTGACGACTCCACAGGACTCAGGATCCCCCTGCTACTGGTCCTCCAAGCCTGACGACTCCACAGGACTCAGGATCCCCCTGCTACTGGTCCTCCAAGCCTGACGACTCCACAGGACTCAGGATCCCCCTGCTACTGGTCCTCCAAGCCTGACGACTCCACAGGACTCAGGATCCCCCTGCTACTGGTCCTCCAAGCCTGACGACTCCACAGGACTCAGGAGCCCCCTGCTACTGGTCCTCCAGGCCTGACGACTCCACAGGACTCAGAAGAAGCTAGAGCTTGACCCCATTGGAGTGCCACTATGGGGAATGTGATGAGGGGTGGGGAAAATAGCAACGAAAGAAATACAAACTGCCATGACAGCGCACTAAAGGGAGAAGACGACACACTTGTTGTTCTCCATGACTATCCTTTTCCAGACATCAGTGAGCCGATCTTCAGGATGGGAGAGAAGCTGAGGGTCTTGTCTCAGGAAGGTAACTGGTGGAGAGTCCGGTCTGGCCAATCAGGAAGGGAGAACTACATCCCTAATAACTATGTTGCCAAAGTCTACCATGGATGGTTGTTTGAGGGAGTGGCGAGGCAGAAGGCGGAGGAACTACTTCGCCTCCCTGTAAACAGAGTGGGATCCTTCATGATCAGAGAGAGCACACAGCAGAGAGGTGTCTACTCCATGTCTGTAAAGCACAGATCCATCAAGCACTATAAAATCTATCGCTTGGAGAACAACGGCTGGTACTATATCTCTCCTCGCCTGACCTTCCAGTGCCTGGAAGAGATGGTCAACCACTACTGTGACTCTGCAGATGGGCTGTGCTGTGTTCTCACTGGCCCGTGTCTGTGTGGGACCGCCAACCTCCTCGACACCACCACTCAGCCACCCCCTGTAGTGATGCGCCGCAATAACTTCGACTGGAAGAAAGTAGACAGGAAAGATCTGATCAGTGCAGGGGCTCCCCAGGGGCAGCAGAACAGGGACACCATGGTGAGCTATGGAGTCAGGAACAGCATCGCCTCTTACCTCTCTCTTGCCGGGGCTCAGGGCCCTAGACAGCAGCAGAAGAACCACAAGAAGAATAAATCTGTCTACGTCACCTCCCACAGTCTCAGCCATATGGACCTGGAGGAGGACTATGATACGTAGTGGCCTGCATAggccagtggttctcaaacctctcttTGGGGACCCCCAGACGTCCATGTATTTGAtctattccagagctagcacacttgattcaacttgtcaactaatcaacATGTACTTGACTAGGTGAATCACGTCAGCTAGTAAGGGCTATAACAAAATTGTGAAACGTCtaggggtccccgaggagaggtttgagaagaACTGGCCTAGGCTACCAGATTCGGCATGGGTTCGAATCCAACCCACTGCCTTGCTATCTTTGTTGTCGCATCTTCACTGTCCTATCTCAATAACAGAAATGAAGCCCACAGAAAATACGTTTTAAAAAAGACTATGAGACTAAGAGGAGCAACGGCTCAAGGATCCAGACTTTGACACAGAAATTAGCACTTTGAACCAGGGAACTGGATAAACTAACATTTTTTCTTCTGATCTCGACACCCAGAACCAAATCTTGCCCGGTGGCCAGAGTCCCTATTTAAATGTTAACCTCTGTTACGAGATATTTTCCTCCAATACACACACTGCTCCTTATCTGAGCCTTTGGGATTGAACTGATAAGGAATTGGAAGCTCAGTGGGATAAATCAACATTGAAGTTGAAGTCCGTCCAGAGTCCAGAGCACTGACCGAGTGTCCTGCAAAAATTCAACACATGTTAGCATCATGACAGTCGATAAAATAGTTGAATGCTgtgttgtgggtgtttgtgtgaatgtgtaatATTATGAGGAAAGAAACATGGAAGGAAAGGGGAATACCTAGACAGCTGCACAACtgaatgtgtcttccacatttaacccaacccctctgaatcagaaaggtGCGGGGGGCTGACTTAATCGACGCCCGGGGAGCAATTGTTGTTATTGTGGATGTGTGTGAATGTCAATGGTTACCAGCTTCAGAAGATTTAGCCTGACCCCTTGCAAAGTGATTTCTGTTGAGTACATGTTCATATAAATAAAAGTAAGGTATTGTATAATCTCGGCAAACCAGAACCAAATATTGTGTGTGATCTGGCCAGCTCTTCTGTCACGACTCACGAGAGACTAGTGAGTACATACTGTTTCAAAAAGTTCCTGGAAGGGCTATGGAGAGTTACGTCCAAAGAGCTAGAACTGCATGCAGATGATAAAACATCACAAAGATGACTGCCCAGAACAAGTTGTCCTCTTGAAAGTAACCCAGGGCTTCAAGCCTGCACCAAATTGAATAGGAATCAACATAGCATTCCCGAATCCAAGCAAACATCCAAGAAAACAGCACAGTGAAAAGGTTCTGATGTGTGTATTGTCtaagtgtgttgttgttgtggctGATTGTCTCGCCAAGGCCTCATGGCGGCCATATGTGATGCTGATTAGTTCATTGTTACTGTGAAAGCTGGTGTCTTATCTTAGGATGTGAACTAATCAACTCTGTCTGATGCAATGATAATGCAATAGATCAATTCCAATTGTGTTGTGGGGAAGTAAAGCAACAATGTACCATAA

Function

NR:

description
src-like-adapter

GO: NA

KEGG:

id description
K23698 SLA; src-like-adapter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572676.2 True 2655 mRNA 0.48 8 61479028 61493313

Neighbor

gene id symbol gene type direction distance location
elp2 elp2 coding downstream 155167 61267281 ~ 61323861 (-)
c18h18orf21 cssa27h18orf21 coding downstream 808458 60645610 ~ 60670570 (-)
LOC110496651 NA coding downstream 836874 60610487 ~ 60642154 (-)
LOC110496650 elmo1 coding downstream 875110 60425049 ~ 60603918 (-)
LOC110496648 NA coding downstream 1104157 60372518 ~ 60374871 (-)
LOC110496659 LOC106588970 coding upstream 52346 61545659 ~ 61587847 (-)
LOC110496662 LOC106588967 coding upstream 196738 61690051 ~ 61708402 (-)
hsf1a hsf1a coding upstream 303699 61797012 ~ 61828577 (-)
LOC110496666 LOC106588964 coding upstream 366406 61859719 ~ 61867675 (-)
LOC110496668 brp16 coding upstream 464640 61957953 ~ 61968581 (-)
G1570016 NA non-coding downstream 221458 61254316 ~ 61257570 (-)
G1569933 NA non-coding downstream 376937 61097237 ~ 61102091 (-)
G1569484 NA non-coding downstream 706546 60772246 ~ 60772482 (-)
G1569476 NA non-coding downstream 709833 60768489 ~ 60769195 (-)
G1569475 NA non-coding downstream 723865 60753492 ~ 60755163 (-)
G1570633 NA non-coding upstream 33201 61526514 ~ 61526841 (-)
G1570649 NA non-coding upstream 94833 61588146 ~ 61588404 (-)
G1570657 NA non-coding upstream 109949 61603262 ~ 61603611 (-)
G1570661 NA non-coding upstream 115586 61608899 ~ 61609236 (-)
G1570664 NA non-coding upstream 121615 61614928 ~ 61615137 (-)
G1570468 NA other downstream 185877 61291304 ~ 61293151 (-)
G1569439 NA other downstream 784929 60693378 ~ 60694099 (-)
G1569277 NA other downstream 1089936 60379853 ~ 60389092 (-)
G1570695 NA other upstream 172015 61665328 ~ 61665910 (-)
G1572487 NA other upstream 1942485 63435798 ~ 63491169 (-)
G1573054 NA other upstream 2520466 64013779 ~ 64014965 (-)
LOC110496680 LOC106589004 other upstream 2689645 64017203 ~ 64244837 (-)
G1573887 NA other upstream 3476978 64970291 ~ 64971167 (-)

Expression


Co-expression Network