LOC110496662 (LOC106588967)


Basic Information

Item Value
gene id LOC110496662
gene name LOC106588967
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 61690051 ~ 61708402 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572680.2
CTTGTCTATGTAGTACCCATCAAATGAGTGCTGACATGCGCCACCCCGAGGAGTGGAGGTCTTGAGTAACTGCCCTCCTTTATCGAAAACTGGTTGCTGGAGTCCAGTGTCGCCATATTGTCATCCCGAAGCTCTGAgagGTCCTGAGGAGAGAGCCTTTGCTTCCACCTGAAGATGTCTGGCCCGGTCACCAGCCGATCCCGGGTTTACCCCGATGTGAACACACAGAGACCCCGGGAGTACTGGGACTACGAGTCACACGTTGTGGAGTGGGGgaATCAAGATGACTACCAGCTGGTGCGAAAGCTCGGCCGGGGCAAATACAGCGAAGTGTTTGAAGCTATCAACATCACAAACAACGAGAAAGTAGTCGTCAAAATACTCAAGCCAGTAAAAAAGAAGAAAATCAAGCGAGAAATCAAGATTCTAGAAAACCTGCGAGGCGGCCCCAACATCATCTCACTTCTAGACATCGTCAAGGATCCAGTGTCTCGGACTCCAGCTCTGGTCTTTGAACACGTCAACAACACAGACTTCAAGCAATTGTATCAAACGCTATCCGACTACGACATACGGTTCTACATGTATGAGATCTTGAAGGCTCTGGACTACTGTCACAGTATGGGAATCATGCACAGAGACGTCAAGCCACACAACGTCATGATCGACCACGAACACAGAAAGCTTCGCCTTATAGACTGGGGTTTGGCAGAGTTCTACCACCCTGCTCAGGAGTACAACGTACGAGTGGCTTCCCGATACTTCAAGGGTCCAGAGCTGCTGGTCGACTACCAGATGTACGACTACAGTTTAGACATGTGGAGCTTGGGCTGCATGCTGGCCAGTATGATCTTCAGGAAGGAGCCTTTCTTCCACGGACACGACAACTATGACCAGCTTGTACGAATCGCAAAAGTCCTGGGCACAGAAGACCTGTATGACTACATCGACAAATACAACATCGAGCTAGACCCAAGGTTCAATGACATCCTGGGCAGGCATTCCCGTAAGCGGTGGGAGAGGTTTGTCCACAGTGAGAACCAGCACCTGGTCAGCACTGAGGCACTGGACTTCCTGGACAAGCTGCTGCGTTACGACCACCACGCCCGCCTCACCGCCCGGGAGGCCATGGAGCACCCCTACTTCTACCCCATTGTGAAAGACCAGGCGAGGATGGGCTCTATATCAGGGCTGTCGACTGGTTCTACCCCAGTCAGCTCCTCCAGTATGATGACAGgcATCACTTCCATGTCCTCGTCGCAGCCCCTGGCTAACGTGGCGGGCTCTCCTGTGATCTCTTCCCCCAGTGCTCTGGCCACGCAGGTCCCAGCCGCCGGGGCCCAGCCCTGAAAGGTGCTCTCAGCCTGGGGCCCGGGACGGACCCACAGCCCCTGTCTGGCCCGGCCTACCAAGCCCTCAGCAGGTCCAGGCAACAATCATTTTTATGTTGAGtataacaaagagagagagaaaaaaagatatTAGGTTCCCCTTTTTTCTTTTACCATACAATAATTATATATTGAGATCCGGGCGCACAACGAGAGACAGAAAAaagaagataaaacaaacattacTTGCGTCTGTGTCCGGATAAAAACAGTAGCTGCGTTCTTTCATAATGAGTGTCTAGAAATGcaactacaatgtagaaatgaaGCAAAATggataataaaatgtattttatatgtcCCTAAAGTACTTTTGTTTGAGGTGGTTTTCTATGGGCCAGAGGTTGTTATCATTTTCTAGTGTTTTTGTTTTCTAATCAACCGTTAGTGGTCACATGAAATGACTCATGGGCTGCATGTAACACTTTCTGTTTGTTAAATACATTTCTTCTGTTGGTCATATAGTTTCAACATTGAATTTCTCTCTAtagaacgcccccccccccccccccccccccgtagttATTTTCAATGTTATCCGTAATGTTCTTATCACGAGGCATTTTCACAATGATTATGCTTGTTATTTAGTTGTGGCTATTCCAAGGCTCATTGAACAACCATTTTGTACAAGAGTTAAGGTGACATATGACATTGTGTTTATAAAATGTGTTCAATAA

Function

NR:

description
PREDICTED: casein kinase II subunit alpha-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K03097 CSNK2A; casein kinase II subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572680.2 True 2071 mRNA 0.48 13 61690051 61708402

Neighbor

gene id symbol gene type direction distance location
LOC110496659 LOC106588970 coding downstream 102204 61545659 ~ 61587847 (-)
LOC110496657 LOC106588974 coding downstream 196738 61479028 ~ 61493313 (-)
elp2 elp2 coding downstream 366190 61267281 ~ 61323861 (-)
c18h18orf21 cssa27h18orf21 coding downstream 1019481 60645610 ~ 60670570 (-)
LOC110496651 NA coding downstream 1047897 60610487 ~ 60642154 (-)
hsf1a hsf1a coding upstream 88610 61797012 ~ 61828577 (-)
LOC110496666 LOC106588964 coding upstream 151317 61859719 ~ 61867675 (-)
LOC110496668 brp16 coding upstream 249551 61957953 ~ 61968581 (-)
LOC118941000 NA coding upstream 310014 62018416 ~ 62035927 (-)
LOC118941001 NA coding upstream 334958 62043360 ~ 62098767 (-)
G1570712 NA non-coding downstream 11921 61677724 ~ 61678130 (-)
G1570699 NA non-coding downstream 16100 61673701 ~ 61673951 (-)
G1570697 NA non-coding downstream 20033 61669803 ~ 61670018 (-)
G1570696 NA non-coding downstream 22999 61665974 ~ 61667052 (-)
G1570695 NA non-coding downstream 24472 61665328 ~ 61665910 (-)
G1570772 NA non-coding upstream 83611 61792013 ~ 61792306 (-)
G1570704 NA non-coding upstream 86994 61795396 ~ 61795820 (-)
G1570839 NA non-coding upstream 215037 61923439 ~ 61923775 (-)
G1570844 NA non-coding upstream 224731 61933133 ~ 61933337 (-)
G1570468 NA other downstream 396900 61291304 ~ 61293151 (-)
G1569439 NA other downstream 995952 60693378 ~ 60694099 (-)
G1572487 NA other upstream 1727396 63435798 ~ 63491169 (-)
G1573054 NA other upstream 2305377 64013779 ~ 64014965 (-)
LOC110496680 LOC106589004 other upstream 2474556 64017203 ~ 64244837 (-)
G1573887 NA other upstream 3261889 64970291 ~ 64971167 (-)
G1575088 NA other upstream 3601641 65310043 ~ 65311051 (-)

Expression


Co-expression Network