LOC110496666 (LOC106588964)


Basic Information

Item Value
gene id LOC110496666
gene name LOC106588964
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 61859719 ~ 61867675 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572685.2
acactccCACTGGCTATAAAGCCCAACCATACTGAAACGCTCAGACAGAAACCACACGTGGATCTgagcactgggagagagggagagcgagcagGAGGGAGGGTAAGAGAGAAAGCGCAAGGGACAGATGTGGAACTGAGTTGAGGGAGACAGACGatctgagaggagagagcaagagagaaataaagaaagaccaACCATATCCTAAGAGGACCTGAGAAAAACACAGTGGAACCTGCCATTCAGCCATTTGATTTCGTTTTTCCCACCAAAGGAAAAGTCCAAACTCTACATGGGACTTTAATGACAGAGGAGCCTGTGATACTGGACTGTAGTGCACTGGCAGCTAAGGATTAGAAAAGTATACTGAGGTAAAACTGTGTTATCATTTAACTATCCATGCATGTGTGAGCAGCAGTGGGGAGTCCAGGTGTCACAGTAGTAAACAAAGCCCAGAGCAGAGTTAGCTAATTGGTGGAACAGCAGAGCACGGTAACATTGACGATGTCCTTCGCCATGGTGCGGCCGGCGCCCAGCCGGTACCTGTACTCTGACATCTCCATGCTGTCCGAGGACGAAGAGAACGGCAACGAGAGCTCGGGCTCCGACGAACGCTCCTTCCGGCTGGACGCCAGAGGTTATGACATAAAGGTCGGGGGGCGCAAAAGGAAGCCTGGAAGCATCGGAGGGGGCCGTCTGGGAGGGGGCCAGCTCCCGCCCCAGATGTCACACCTCCAGGTCTCAGACGGATCCATCTCTCCGACGAGCGGGCTGCCACGGCAACGCAACGCAGCTAACGCTCGGGAGCGGGACCGCACCAACAGTGTGAACACAGCCTTCACCGCCCTGAGGACCCTTATCCCCACTGAACCGGCCGACAGGAAGCTGTCCAAGATCGAGACACTGCGACTGGCGTCCAGCTACATCTCCCACCTGGGCAATGTGCTGCTGGTTGGGGACATGTGTGGGGATGGGCAGCCCTGCCACGGTGGAACAACCTCCTCTGCTCACTACCTAAATCACCACGGATCGCCAGGCCGCGACGCAGAGAACTCCCAGCCCAAACAGATCTGCACCTTCTGCCTCAGCAACCAGAGGAAAATGAGCAAAGACAGGCAAAAAACTGCTCTAAGAAGTTAATGTCTGGAGGACGACAGAATATGGACCAGAActgtggacaaaaaaaaaaaacttgacacACTTAAGTTGTACATAAATATCAAAATTGGTATTTAATTATATGCCCcccaaaaaacagaaaaaaattataattcaGGACTGCTAAGTTTAGTTTCTGAAGAGGTAATCATGTTTGATTGAAAGAGACGGTGGGACTTCTTGGACAGTGGAAGCATGCCCTGACTCAAAGGAAGTATGAAGAATCATTTCAAAATAAAACTTTCTACACTTCTGATTCCATGACCTCACAAAGACTTGAAGAGAACACCAAAAAGAGGTCTTATTTTCTCTTTACCTGAGAACGTCTGCATACGCAGACTGATAATGCTGAAACTTTAGAACCACAACAGCCTCTGCATGAGACGGACTCTGAGAAGCGCCACAGTTACTTAGAGGTGTGGTAAGGAGGGACTTCAAGGACAAGGACAGGCCAAACAGGAACTGATGATTGGCTATCAGGTTACTTTCTGAAAAATTACCAAACTGTTCAACAAGCCAAATATATAACAACAGCTTTCACTTGATATTTGTTCTGGACAGTGAGTTTCTACACCCATGGACAACTGCCTTTCTCCTGAAGAAGATAGGACAACATGTAGCGGCTTGATGCTATTTCATATGCTGTTCAATGATGTTTGTTAAAATTCAtgttaataaataaatatgctTATGAATTAA
>TU1797205
CTCGGGAGCGGGACCGCACCAACAGTGTGAACACAGCCTTCACCGCCCTGAGGACCCTTATCCCCACTGAACCGGCCGACAGGAAGCTGTCCAAGATCGAGACACTGCGACTGGCGTCCAGCTACATCTCCCACCTGGGCAATGTGCTGCTGGTTGGGGACATGTGTGGGGATGGGCAGCCCTGCCACGGTGGAACAACCTCCTCTGCTCACTACCTAAATCACCACGGATCGCCAGGCCGCGACGCAGAGAACTCCCAGCCCAAACAGATCTGCACCTTCTGCCTCAGCAACCAGAGGAAAATGAGCAAAGACAGGCAAAAAACTGCTCTAAGAAGTTAATGTCTGGAGGACGACAGAATATGGACCAGAActgtggacaaaaaaaaaaaacttgacacACTTAAGTTGTACATAAATATCAAAATTGGTATTTAATTATATGCCCcccaaaaaacagaaaaaaattataattcaGGACTGCTAAGTTTAGTTTCTGAAGAGGTAATCATGTTTGATTGAAAGAGACGGTGGGACTTCTTGGACAGTGGAAGCATGCCCTGACTCAAAGGAAGTATGAAGAATCATTTCAAAATAAAACTTTCTACACTTCTGATTCCATGACCTCACAAAGACTTGAAGAGAACACCAAAAAGAGGTCTTATTTTCTCTTTACCTGAGAACGTCTGCATACGCAGACTGATAATGCTGAAACTTTAGAACCACAACAGCCTCTGCATGAGACGGACTCTGAGAAGCGCCACAGTTACTTAGAGGTGTGGTAAGGAGGGACTTCAAGGACAAGGACAGGCCAAACAGGAACTGATGATTGGCTATCAGGTTACTTTCTGAAAAATTACCAAACTGTTCAACAAGCCAAATATATAACAACAGCTTTCACTTGATATTTGTTCTGGACAGTGAGTTTCTACACCCATGGACAACTGCCTTTCTCCTGAAGAAGATAGGACAACATGTAGCGGCTTGATGCTATTTCATATGCTGTTCAATGATGTTTGTTAAAATTCAtgttaataaataaatatgctT

Function

NR:

description
basic helix-loop-helix transcription factor scleraxis-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572685.2 False 1857 mRNA 0.48 2 61859719 61867675
TU1797205 True 1049 lncRNA 0.44 2 61859728 61866876

Neighbor

gene id symbol gene type direction distance location
hsf1a hsf1a coding downstream 31142 61797012 ~ 61828577 (-)
LOC110496662 LOC106588967 coding downstream 151317 61690051 ~ 61708402 (-)
LOC110496659 LOC106588970 coding downstream 271872 61545659 ~ 61587847 (-)
LOC110496657 LOC106588974 coding downstream 366406 61479028 ~ 61493313 (-)
elp2 elp2 coding downstream 535858 61267281 ~ 61323861 (-)
LOC110496668 brp16 coding upstream 90278 61957953 ~ 61968581 (-)
LOC118941000 NA coding upstream 150741 62018416 ~ 62035927 (-)
LOC118941001 NA coding upstream 175685 62043360 ~ 62098767 (-)
zgc:63863 LOC106588987 coding upstream 517003 62384678 ~ 62407274 (-)
cfap20 cfap20 coding upstream 568140 62435815 ~ 62441111 (-)
G1570704 NA non-coding downstream 63899 61795396 ~ 61795820 (-)
G1570772 NA non-coding downstream 67413 61792013 ~ 61792306 (-)
G1570712 NA non-coding downstream 181589 61677724 ~ 61678130 (-)
G1570699 NA non-coding downstream 185768 61673701 ~ 61673951 (-)
G1570697 NA non-coding downstream 189701 61669803 ~ 61670018 (-)
G1570839 NA non-coding upstream 55764 61923439 ~ 61923775 (-)
G1570844 NA non-coding upstream 65458 61933133 ~ 61933337 (-)
G1570845 LOC100846954 non-coding upstream 65832 61933507 ~ 61933772 (-)
G1570892 NA non-coding upstream 137518 62005193 ~ 62007161 (-)
G1570900 NA non-coding upstream 149722 62017397 ~ 62017820 (-)
G1570695 NA other downstream 193809 61665328 ~ 61665910 (-)
G1570468 NA other downstream 566568 61291304 ~ 61293151 (-)
G1569439 NA other downstream 1165620 60693378 ~ 60694099 (-)
LOC110496651 NA other downstream 1243427 60610487 ~ 60642154 (-)
G1572487 NA other upstream 1568123 63435798 ~ 63491169 (-)
G1573054 NA other upstream 2146104 64013779 ~ 64014965 (-)
LOC110496680 LOC106589004 other upstream 2315283 64017203 ~ 64244837 (-)
G1573887 NA other upstream 3102616 64970291 ~ 64971167 (-)
G1575088 NA other upstream 3442368 65310043 ~ 65311051 (-)

Expression


Co-expression Network