LOC110496668 (brp16)


Basic Information

Item Value
gene id LOC110496668
gene name brp16
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 61957953 ~ 61968581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572690.2
GTGCGTCATAATAAACGTTTGATCAATGTTACAGAACCTCAAGATTGgttttaaatacagaaatatgtatCAAGCCAGCTAGCTACGATGTACGATGTAGCTAGCTACGAAACTTTTAACAGTCAAGGAATTCGGATGGTTTTATATCGCCTGAGATATAGAAACTACAGTGAACCCATGTTCGACTGGCTAGCTAGCACGATCGAAAGGACTCGGATATGATCCTGCTATGTGACAGCATGAGTTTATTTGAAGATTTGGATTGACCATCACACGTTGCCTGTCCACCATCATGCTGAGTGACGTGGAGGCAAAAGAGCTGCTGTCCTTCCTCACCCTGAACACCAGGCCGGACCTCAAGGGCCAGGCCACAGAGTACATCCTGGGCCTATCTGGCAACAGGGACGGCTGTCGCTACCTACAGTCAAAACCTGACTTCCTTAAAGCCCTGGTGACCCTCACCACCGACCCCTCTATCGCTATCGTCAAAGACTGTTACCACTCTCTCATCAACCTCTCGGCTGACGAGACCATGCACCAACCGCTGGTGAAAGACGCTGACTTCCTCCCTATGTTGTTTAAAAACCTCCTGGACCCAGAGTTTATGTTTGCAGACCGTATCTGTACGATCCTCACTAACCTGTCGCGGCACGTGAAGACGTGTAAAGAGGTGTTTAAGGCTATGCAGGAGCAGGAGATAGGTCTGACGCAGATAGTGGAAATCTTCTGCACTGAGGGCTACAACAAGCAGGTGTCACTCCATTACCTGGGCCCCCTCCTCTCCAACTTGACTCAGCTGCCCGAGACCAGACACTTTATCCTGGATAGGGAGAGGTGTGTAGTGCAGAGACTCCTTCCCTACATACAATACGAGGCCTCCACAATCAGACGAGGGGGAGTCATTGGCACTCTGAGAAATTGTTGCTTTGACCATGCTCATCATGAGTGGTTGCTGAGTGATGCAGTGGACATTCTGCCTTTCCTGTTGCTGCCTCTCGCTGGGCCTGAGGAACTGTCTGACGAGGAGAATGAAGGGTTACCCGTCGACCTCCAGTACTTGCCCGAGgacaagaaaagagaggaggatccCGACATTCGCAAGATGCTCATTGAGACCATGATACTGCTGACTGCTACCAAAGTGGGCCGGCAGTTTCTGAAGACCAAGAACACCTATGTCATCATGAGGGAGTTCCACAACTGGGAAAAGGAACCTCACGTGGCCGCTGCTTGTGAGAAGCTCATACAGgtgcTGATCGGGGACGAACCGGAGCCAGGCATGGAGAACTTGTTGGAGGTGGAGATTCCTGAGGATGTGGTGGTGAAGCTCAAAGACATGGATGCCAAGGAGCAGGAGCAGTTGGAGAAGGACCAGGAAGATCTGTTAAATCCAGACAAGCCCCAGCAGTGTGCTGGCATAGTGAGGATGATGTAGCAGAGAGGTCTTTTCTACATTTCATCTGAGCCACCATCTGATGAACAATGGAACCAAACCAACTGCTGACTGGAACGAACAGAAGATAATTCTCGCCATCACAACAACAAACTTGCATGTAAACAGGAGTCggggaggactgtgttgtattttCACATAATGTACATTTAGACAACAAAAGTCAAGTaaccattaaaataatatcattTTGTTTTTAACGAAAA
>XM_021572688.2
AGGTGAGTGTGCGTCATAATAAACGTTTGATCAATGTTACAGAACCTCAAGATTGgttttaaatacagaaatatgtatCAAGCCAGCTAGCTACGATGTACGATGTAGCTAGCTACGAAACTTTTAACAGTCAAGGAATTCGGATGGTTTTATATCGCCTGAGATATAGAAACTACAGTGAACCCATGTTCGACTGGCTAGCTAGCACGATCGAAAGGACTCGGATATGATCCTGCTATGTGACAGCATGAGTTTATTCAAGCTTTCTTTACACTTGTGGAATTGTAACCCTGTATCTTGTGACTGTCAACTTTTGGATTAGTGAAGATTTGGATTGACCATCACACGTTGCCTGTCCACCATCATGCTGAGTGACGTGGAGGCAAAAGAGCTGCTGTCCTTCCTCACCCTGAACACCAGGCCGGACCTCAAGGGCCAGGCCACAGAGTACATCCTGGGCCTATCTGGCAACAGGGACGGCTGTCGCTACCTACAGTCAAAACCTGACTTCCTTAAAGCCCTGGTGACCCTCACCACCGACCCCTCTATCGCTATCGTCAAAGACTGTTACCACTCTCTCATCAACCTCTCGGCTGACGAGACCATGCACCAACCGCTGGTGAAAGACGCTGACTTCCTCCCTATGTTGTTTAAAAACCTCCTGGACCCAGAGTTTATGTTTGCAGACCGTATCTGTACGATCCTCACTAACCTGTCGCGGCACGTGAAGACGTGTAAAGAGGTGTTTAAGGCTATGCAGGAGCAGGAGATAGGTCTGACGCAGATAGTGGAAATCTTCTGCACTGAGGGCTACAACAAGCAGGTGTCACTCCATTACCTGGGCCCCCTCCTCTCCAACTTGACTCAGCTGCCCGAGACCAGACACTTTATCCTGGATAGGGAGAGGTGTGTAGTGCAGAGACTCCTTCCCTACATACAATACGAGGCCTCCACAATCAGACGAGGGGGAGTCATTGGCACTCTGAGAAATTGTTGCTTTGACCATGCTCATCATGAGTGGTTGCTGAGTGATGCAGTGGACATTCTGCCTTTCCTGTTGCTGCCTCTCGCTGGGCCTGAGGAACTGTCTGACGAGGAGAATGAAGGGTTACCCGTCGACCTCCAGTACTTGCCCGAGgacaagaaaagagaggaggatccCGACATTCGCAAGATGCTCATTGAGACCATGATACTGCTGACTGCTACCAAAGTGGGCCGGCAGTTTCTGAAGACCAAGAACACCTATGTCATCATGAGGGAGTTCCACAACTGGGAAAAGGAACCTCACGTGGCCGCTGCTTGTGAGAAGCTCATACAGgtgcTGATCGGGGACGAACCGGAGCCAGGCATGGAGAACTTGTTGGAGGTGGAGATTCCTGAGGATGTGGTGGTGAAGCTCAAAGACATGGATGCCAAGGAGCAGGAGCAGTTGGAGAAGGACCAGGAAGATCTGTTAAATCCAGACAAGCCCCAGCAGTGTGCTGGCATAGTGAGGATGATGTAGCAGAGAGGTCTTTTCTACATTTCATCTGAGCCACCATCTGATGAACAATGGAACCAAACCAACTGCTGACTGGAACGAACAGAAGATAATTCTCGCCATCACAACAACAAACTTGCATGTAAACAGGAGTCggggaggactgtgttgtattttCACATAATGTACATTTAGACAACAAAAGTCAAGTaaccattaaaataatatcattTTGTTTTTAACGAAAA
>XM_021572687.2
TATCTGTAATCCTATTGGAGACGCAAAATGTCAAATGCGGAAGTGCTTAGTTATCAGCATGGAACGACCCATGTGGATGAGCAAGCTTTCTTTACACTTGTGGAATTGTAACCCTGTATCTTGTGACTGTCAACTTTTGGATTAGTGAAGATTTGGATTGACCATCACACGTTGCCTGTCCACCATCATGCTGAGTGACGTGGAGGCAAAAGAGCTGCTGTCCTTCCTCACCCTGAACACCAGGCCGGACCTCAAGGGCCAGGCCACAGAGTACATCCTGGGCCTATCTGGCAACAGGGACGGCTGTCGCTACCTACAGTCAAAACCTGACTTCCTTAAAGCCCTGGTGACCCTCACCACCGACCCCTCTATCGCTATCGTCAAAGACTGTTACCACTCTCTCATCAACCTCTCGGCTGACGAGACCATGCACCAACCGCTGGTGAAAGACGCTGACTTCCTCCCTATGTTGTTTAAAAACCTCCTGGACCCAGAGTTTATGTTTGCAGACCGTATCTGTACGATCCTCACTAACCTGTCGCGGCACGTGAAGACGTGTAAAGAGGTGTTTAAGGCTATGCAGGAGCAGGAGATAGGTCTGACGCAGATAGTGGAAATCTTCTGCACTGAGGGCTACAACAAGCAGGTGTCACTCCATTACCTGGGCCCCCTCCTCTCCAACTTGACTCAGCTGCCCGAGACCAGACACTTTATCCTGGATAGGGAGAGGTGTGTAGTGCAGAGACTCCTTCCCTACATACAATACGAGGCCTCCACAATCAGACGAGGGGGAGTCATTGGCACTCTGAGAAATTGTTGCTTTGACCATGCTCATCATGAGTGGTTGCTGAGTGATGCAGTGGACATTCTGCCTTTCCTGTTGCTGCCTCTCGCTGGGCCTGAGGAACTGTCTGACGAGGAGAATGAAGGGTTACCCGTCGACCTCCAGTACTTGCCCGAGgacaagaaaagagaggaggatccCGACATTCGCAAGATGCTCATTGAGACCATGATACTGCTGACTGCTACCAAAGTGGGCCGGCAGTTTCTGAAGACCAAGAACACCTATGTCATCATGAGGGAGTTCCACAACTGGGAAAAGGAACCTCACGTGGCCGCTGCTTGTGAGAAGCTCATACAGgtgcTGATCGGGGACGAACCGGAGCCAGGCATGGAGAACTTGTTGGAGGTGGAGATTCCTGAGGATGTGGTGGTGAAGCTCAAAGACATGGATGCCAAGGAGCAGGAGCAGTTGGAGAAGGACCAGGAAGATCTGTTAAATCCAGACAAGCCCCAGCAGTGTGCTGGCATAGTGAGGATGATGTAGCAGAGAGGTCTTTTCTACATTTCATCTGAGCCACCATCTGATGAACAATGGAACCAAACCAACTGCTGACTGGAACGAACAGAAGATAATTCTCGCCATCACAACAACAAACTTGCATGTAAACAGGAGTCggggaggactgtgttgtattttCACATAATGTACATTTAGACAACAAAAGTCAAGTaaccattaaaataatatcattTTGTTTTTAACGAAAA
>XM_021572689.2
ACTAAGGATTACTTTTGGAAGCGGATATATCTATATTATCTGTAATCCTATTGGAGACGCAAAATGTCAAATGCGGAAGTGCTTAGTTATCAGCATGGAACGACCCATGTGGATGAGTGAAGATTTGGATTGACCATCACACGTTGCCTGTCCACCATCATGCTGAGTGACGTGGAGGCAAAAGAGCTGCTGTCCTTCCTCACCCTGAACACCAGGCCGGACCTCAAGGGCCAGGCCACAGAGTACATCCTGGGCCTATCTGGCAACAGGGACGGCTGTCGCTACCTACAGTCAAAACCTGACTTCCTTAAAGCCCTGGTGACCCTCACCACCGACCCCTCTATCGCTATCGTCAAAGACTGTTACCACTCTCTCATCAACCTCTCGGCTGACGAGACCATGCACCAACCGCTGGTGAAAGACGCTGACTTCCTCCCTATGTTGTTTAAAAACCTCCTGGACCCAGAGTTTATGTTTGCAGACCGTATCTGTACGATCCTCACTAACCTGTCGCGGCACGTGAAGACGTGTAAAGAGGTGTTTAAGGCTATGCAGGAGCAGGAGATAGGTCTGACGCAGATAGTGGAAATCTTCTGCACTGAGGGCTACAACAAGCAGGTGTCACTCCATTACCTGGGCCCCCTCCTCTCCAACTTGACTCAGCTGCCCGAGACCAGACACTTTATCCTGGATAGGGAGAGGTGTGTAGTGCAGAGACTCCTTCCCTACATACAATACGAGGCCTCCACAATCAGACGAGGGGGAGTCATTGGCACTCTGAGAAATTGTTGCTTTGACCATGCTCATCATGAGTGGTTGCTGAGTGATGCAGTGGACATTCTGCCTTTCCTGTTGCTGCCTCTCGCTGGGCCTGAGGAACTGTCTGACGAGGAGAATGAAGGGTTACCCGTCGACCTCCAGTACTTGCCCGAGgacaagaaaagagaggaggatccCGACATTCGCAAGATGCTCATTGAGACCATGATACTGCTGACTGCTACCAAAGTGGGCCGGCAGTTTCTGAAGACCAAGAACACCTATGTCATCATGAGGGAGTTCCACAACTGGGAAAAGGAACCTCACGTGGCCGCTGCTTGTGAGAAGCTCATACAGgtgcTGATCGGGGACGAACCGGAGCCAGGCATGGAGAACTTGTTGGAGGTGGAGATTCCTGAGGATGTGGTGGTGAAGCTCAAAGACATGGATGCCAAGGAGCAGGAGCAGTTGGAGAAGGACCAGGAAGATCTGTTAAATCCAGACAAGCCCCAGCAGTGTGCTGGCATAGTGAGGATGATGTAGCAGAGAGGTCTTTTCTACATTTCATCTGAGCCACCATCTGATGAACAATGGAACCAAACCAACTGCTGACTGGAACGAACAGAAGATAATTCTCGCCATCACAACAACAAACTTGCATGTAAACAGGAGTCggggaggactgtgttgtattttCACATAATGTACATTTAGACAACAAAAGTCAAGTaaccattaaaataatatcattTTGTTTTTAACGAAAA
>XM_036953463.1
aaatTAATGAAAGATACcctataaaaaaaattaaaccaCACCACTCCACTCGaccaggatgcccggcatcagaacattccCGTGATTGACAGATAGCAagttgattggcatgtcggaccccgcgaacactgggtactgTGAAGATTTGGATTGACCATCACACGTTGCCTGTCCACCATCATGCTGAGTGACGTGGAGGCAAAAGAGCTGCTGTCCTTCCTCACCCTGAACACCAGGCCGGACCTCAAGGGCCAGGCCACAGAGTACATCCTGGGCCTATCTGGCAACAGGGACGGCTGTCGCTACCTACAGTCAAAACCTGACTTCCTTAAAGCCCTGGTGACCCTCACCACCGACCCCTCTATCGCTATCGTCAAAGACTGTTACCACTCTCTCATCAACCTCTCGGCTGACGAGACCATGCACCAACCGCTGGTGAAAGACGCTGACTTCCTCCCTATGTTGTTTAAAAACCTCCTGGACCCAGAGTTTATGTTTGCAGACCGTATCTGTACGATCCTCACTAACCTGTCGCGGCACGTGAAGACGTGTAAAGAGGTGTTTAAGGCTATGCAGGAGCAGGAGATAGGTCTGACGCAGATAGTGGAAATCTTCTGCACTGAGGGCTACAACAAGCAGGTGTCACTCCATTACCTGGGCCCCCTCCTCTCCAACTTGACTCAGCTGCCCGAGACCAGACACTTTATCCTGGATAGGGAGAGGTGTGTAGTGCAGAGACTCCTTCCCTACATACAATACGAGGCCTCCACAATCAGACGAGGGGGAGTCATTGGCACTCTGAGAAATTGTTGCTTTGACCATGCTCATCATGAGTGGTTGCTGAGTGATGCAGTGGACATTCTGCCTTTCCTGTTGCTGCCTCTCGCTGGGCCTGAGGAACTGTCTGACGAGGAGAATGAAGGGTTACCCGTCGACCTCCAGTACTTGCCCGAGgacaagaaaagagaggaggatccCGACATTCGCAAGATGCTCATTGAGACCATGATACTGCTGACTGCTACCAAAGTGGGCCGGCAGTTTCTGAAGACCAAGAACACCTATGTCATCATGAGGGAGTTCCACAACTGGGAAAAGGAACCTCACGTGGCCGCTGCTTGTGAGAAGCTCATACAGgtgcTGATCGGGGACGAACCGGAGCCAGGCATGGAGAACTTGTTGGAGGTGGAGATTCCTGAGGATGTGGTGGTGAAGCTCAAAGACATGGATGCCAAGGAGCAGGAGCAGTTGGAGAAGGACCAGGAAGATCTGTTAAATCCAGACAAGCCCCAGCAGTGTGCTGGCATAGTGAGGATGATGTAGCAGAGAGGTCTTTTCTACATTTCATCTGAGCCACCATCTGATGAACAATGGAACCAAACCAACTGCTGACTGGAACGAACAGAAGATAATTCTCGCCATCACAACAACAAACTTGCATGTAAACAGGAGTCggggaggactgtgttgtattttCACATAATGTACATTTAGACAACAAAAGTCAAGTaaccattaaaataatatcattTTGTTTTTAACGAAAA

Function

NR:

description
protein HGH1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572690.2 False 1659 mRNA 0.49 7 61957953 61967740
XM_021572688.2 False 1731 mRNA 0.48 7 61957953 61967748
XM_021572687.2 False 1554 mRNA 0.49 7 61957953 61967827
XM_021572689.2 False 1526 mRNA 0.49 7 61957953 61967863
XM_036953463.1 True 1547 mRNA 0.50 7 61957953 61968581

Neighbor

gene id symbol gene type direction distance location
LOC110496666 LOC106588964 coding downstream 90278 61859719 ~ 61867675 (-)
hsf1a hsf1a coding downstream 129376 61797012 ~ 61828577 (-)
LOC110496662 LOC106588967 coding downstream 249551 61690051 ~ 61708402 (-)
LOC110496659 LOC106588970 coding downstream 370106 61545659 ~ 61587847 (-)
LOC110496657 LOC106588974 coding downstream 464640 61479028 ~ 61493313 (-)
LOC118941000 NA coding upstream 49835 62018416 ~ 62035927 (-)
LOC118941001 NA coding upstream 74779 62043360 ~ 62098767 (-)
zgc:63863 LOC106588987 coding upstream 416097 62384678 ~ 62407274 (-)
cfap20 cfap20 coding upstream 467234 62435815 ~ 62441111 (-)
LOC110496675 LOC106570403 coding upstream 903407 62871988 ~ 62875096 (-)
G1570845 LOC100846954 non-coding downstream 24181 61933507 ~ 61933772 (-)
G1570844 NA non-coding downstream 24616 61933133 ~ 61933337 (-)
G1570839 NA non-coding downstream 34178 61923439 ~ 61923775 (-)
G1570704 NA non-coding downstream 162133 61795396 ~ 61795820 (-)
G1570892 NA non-coding upstream 36612 62005193 ~ 62007161 (-)
G1570900 NA non-coding upstream 48816 62017397 ~ 62017820 (-)
G1570912 NA non-coding upstream 90455 62059036 ~ 62059531 (-)
G1570924 NA non-coding upstream 110835 62079416 ~ 62079666 (-)
G1570962 NA non-coding upstream 116807 62085388 ~ 62086276 (-)
G1570695 NA other downstream 292043 61665328 ~ 61665910 (-)
elp2 elp2 other downstream 634132 61267281 ~ 61323861 (-)
G1570468 NA other downstream 664802 61291304 ~ 61293151 (-)
G1569439 NA other downstream 1263854 60693378 ~ 60694099 (-)
LOC110496651 NA other downstream 1341661 60610487 ~ 60642154 (-)
G1572487 NA other upstream 1467217 63435798 ~ 63491169 (-)
G1573054 NA other upstream 2045198 64013779 ~ 64014965 (-)
LOC110496680 LOC106589004 other upstream 2214377 64017203 ~ 64244837 (-)
G1573887 NA other upstream 3001710 64970291 ~ 64971167 (-)
G1575088 NA other upstream 3341462 65310043 ~ 65311051 (-)

Expression


Co-expression Network