cfap20 (cfap20)


Basic Information

Item Value
gene id cfap20
gene name cfap20
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 62435815 ~ 62441111 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572696.2
agaaaggggtgTAATAAGGCCCCACCTAACTACGAGCTGACTCTATGgagtttcccatctcctcaaaagtGTCTCTGGCCCCGCTAAAGCGTTGTGTTTCCATGGTAGCTGATACGAGTCAACAATGAATTCCGCTGTGATAAGGGGGCCGGCAGCCTGACATTTTATAGCAACTCAACAACACAAAAGGGGAAAAGGCGAGCAAGTGCATGGTTTATATTGCCGGTACAGACGGTGGTGCCGGACGGCAAAAACTTTAGTAACATTTCTGAAGGTACTTTTCATAGAAGACGCGTATCTTTTTGGGCGTTTTGCGAGGCAGAAGGAAGCACCATTATTGTGTGCCACACGGAATTTGGAGTTGAAGCGTAAGCTGAATCAATTAGCTGAACTAAAGTAACGTTAGCAACAAGTAACAACACATGCACATTAGACGGCTTTATAAACGCAcagaaaatgtttaaaaacaCATTCCAAAGTGGATTCCTATCTATATTGTATAGCATTGGGAGCAAACCTCTTCAGATATGGGATAAAAAGGTCAGGAACGGCCACATAAAACGGATTACAGACAATGACATCCAGTCGCTGGTGCTTGAAGTGGAGGGAACAAATGTCAGCACAACTTACATCACATGTCCGGCAGACCCAAAGAAGACACTTGGCATCAAACTACCTTTCTTGGTTATGATCATCAAGAACTTGAAGAAGTATTTCACCTTTGAAGTCCAGGTGTTGGATGACAAGAATGTGAGGAGGCGGTTTCGGGCCAGTAACTACCAGAGCACCACGCGGGTAAAACCCTTCATCTGTACCATGCCCATGAGGCTGGACGATGGCTGGAACCAGATCCAGTTCAACCTGTCTGACTTCACACGGCGGGCCTACGGCACCAACTACATCGAGACACTCCGTGTGCAGATCCATGCAAACTGCCGCATCCGGAGAGTGTACTTCTCTGACCGACTGTACTCGGAGGATGAGCTCCCTGCAGAGTTCAAACTGTATTTACCCGTACAGAACAAAGCAAAGCAGTAGGGCAGCTGAATCGattctcctcctccatatctgcAGATTGTCTGATGAATTTGTAATGTTTATTTTTCTTTCATATTTTGGAACCATGTGATTGTTTCCTAAATTCTTGTTTCTCTGCACAATAAACATTGTTTAGCATAAAAATCAGCAAA
>XM_021572697.2
cacagaaaggggtgTAATAAGGCCCCACCTAACTACGAGCTGACTCTATGgagtttcccatctcctcaaaagtGTCTCTGGCCCCGCTAAAGCGTTGTGTTTCCATGGTAGCTGATACGAGTCAACAATGAATTCCGCTGTGATAAGGGGGCCGGCAGCCTGACATTTTATAGCAACTCAACAACACAAAAGGGGAAAAGGCGAGCAAGTGCATGGTTTATATTGCCGGTACAGACGGTGGTGCCGGACGGCAAAAACTTTAGTAACATTTCTGAAGGTACTTTTCATAGAAGACGCGTATCTTTTTGGGCGTTTTGCGAGGCAGAAGGAAGCACCATTATTGTGTGCCACACGGAATTTGGAGTTGAAGCGTAAGCTGAATCAATTAGCTGAACTAAAGTAACGTTAGCAACAAGTAACAACACATGCACATTAGACGGCTTTATAAACGCAcagaaaatgtttaaaaacaCATTCCAAAGTGGATTCCTATCTATATTGTATAGCATTGGGAGCAAACCTCTTCAGATATGGGATAAAAAGGTCAGGAACGGCCACATAAAACGGATTACAGACAATGACATCCAGTCGCTGGTGCTTGAAGTGGAGGGAACAAATGTCAGCACAACTTACATCACATGTCCGGCAGACCCAAAGAAGACACTTGGCATCAAACTACCTTTCTTGGTTATGATCATCAAGAACTTGAAGAAGTATTTCACCTTTGAAGTCCAGGTGTTGGATGACAAGAATGTGAGGAGGCGGTTTCGGGCCAGTAACTACCAGAGCACCACGCGGGTAAAACCCTTCATCTGTACCATGCCCATGAGGCTGGACGATGGCTGGAACCAGATCCAGTTCAACCTGTCTGACTTCACACGGCGGGCCTACGGCACCAACTACATCGAGACACTCCGTGTGCAGATCCATGCAAACTGCCGCATCCGGAGAGTGTACTTCTCTGACCGACTGTACTCGGAGGATGAGCTCCCTGCAGAGTTCAAACTGTATTTACCCGTACAGAACAAAGCAAAGTAGGGCAGCTGAATCGattctcctcctccatatctgcAGATTGTCTGATGAATTTGTAATGTTTATTTTTCTTTCATATTTTGGAACCATGTGATTGTTTCCTAAATTCTTGTTTCTCTGCACAATAAACATTGTTTAGCATAAAAATCAGCAAA

Function

symbol description
cfap20 Involved in several processes, including regulation of heart looping; regulation of somitogenesis; and specification of axis polarity. Predicted to be located in centriole and cilium. Predicted to be active in ciliary basal body and motile cilium. Is expressed in Kupffer's vesicle; neural tube; pronephric duct; and spinal cord. Orthologous to human CFAP20 (cilia and flagella associated protein 20).

NR:

description
PREDICTED: cilia- and flagella-associated protein 20 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572696.2 False 1190 mRNA 0.45 6 62435815 62441108
XM_021572697.2 True 1190 mRNA 0.45 6 62435815 62441111

Neighbor

gene id symbol gene type direction distance location
zgc:63863 LOC106588987 coding downstream 28541 62384678 ~ 62407274 (-)
LOC118941001 NA coding downstream 337048 62043360 ~ 62098767 (-)
LOC118941000 NA coding downstream 399888 62018416 ~ 62035927 (-)
LOC110496668 brp16 coding downstream 467234 61957953 ~ 61968581 (-)
LOC110496666 LOC106588964 coding downstream 568140 61859719 ~ 61867675 (-)
LOC110496675 LOC106570403 coding upstream 430877 62871988 ~ 62875096 (-)
LOC110496677 LOC106593246 coding upstream 439381 62880492 ~ 62883071 (-)
LOC118941226 NA coding upstream 441412 62882523 ~ 62882641 (-)
LOC110496678 LOC106588996 coding upstream 448238 62889349 ~ 62903227 (-)
csmd3b LOC106588997 coding upstream 492124 62933235 ~ 63759722 (-)
G1571156 NA non-coding downstream 52420 62380823 ~ 62383395 (-)
G1571177 NA non-coding downstream 62571 62373011 ~ 62373244 (-)
G1571176 NA non-coding downstream 62890 62372724 ~ 62372925 (-)
G1571175 NA non-coding downstream 63276 62372211 ~ 62372539 (-)
G1571174 NA non-coding downstream 63839 62371688 ~ 62371976 (-)
G1571443 LOC105012509 non-coding upstream 42677 62483788 ~ 62483996 (-)
G1571449 NA non-coding upstream 49244 62490355 ~ 62490643 (-)
G1571454 NA non-coding upstream 55408 62496519 ~ 62496756 (-)
G1571461 NA non-coding upstream 67886 62508997 ~ 62509600 (-)
G1571468 NA non-coding upstream 75429 62516540 ~ 62516798 (-)
G1570695 NA other downstream 769905 61665328 ~ 61665910 (-)
elp2 elp2 other downstream 1111994 61267281 ~ 61323861 (-)
G1570468 NA other downstream 1142664 61291304 ~ 61293151 (-)
G1569439 NA other downstream 1741716 60693378 ~ 60694099 (-)
LOC110496651 NA other downstream 1819523 60610487 ~ 60642154 (-)
G1572487 NA other upstream 994687 63435798 ~ 63491169 (-)
G1573054 NA other upstream 1572668 64013779 ~ 64014965 (-)
LOC110496680 LOC106589004 other upstream 1741847 64017203 ~ 64244837 (-)
G1573887 NA other upstream 2529180 64970291 ~ 64971167 (-)
G1575088 NA other upstream 2868932 65310043 ~ 65311051 (-)

Expression


Co-expression Network