LOC110496877 (LOC106588989)


Basic Information

Item Value
gene id LOC110496877
gene name LOC106588989
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 62451402 ~ 62474282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951075.1
ATGGCCAAAGGCCTCATTAAGAACGGGGCCAACGTAGAATTCCAGAATGAAGGGCAGACTCCTCTCCACATAGCTGCCTTGGAGGGAGATGTGCTGCTGCTGAAACGAGAGCAAGGCCAGAGCAAGGCCAACCCTAATGTCACTGACAAGGTCGGAGACGAACTGGCACTTTCCCATTATCTGACCTCTAAGTCCCCTCTGCACATCGCTGCAGAGCGAGGGCACACCAACGTGGTGGAGGTCCTCACAGAGAAGTTCAAGTCCAACGTGCTGGCCAGAACTAAGacagCAGTTAATGTAGGCCCAGGAGACCCCGCAGCACATCGCTGccagggggaaggagggggaaaGGTGGCTGAGATGCTGCTGAAGAGCGGGGCTGATGTCAACACAGAGCACAAGatTGGGGAGACAGCGATGCATGTTGCGGCTCACCATGGAGGACTGCAGATGATAAGAGCCCTGATAGAGGAGGGAAGTGACCTCACCAGGAGATATAAGTATTATAAATCTGTGGACTCTGTTGGTTGTTGGGGTCAAACCTTTCTCAGACGATGGAcagaagaaagagagacatgggCCAATCGTGCAGAGTTCATCCTTTCTTCAGTAGGCTATGCAGTCGGAATTGGAAATGTGTGGCGCTTTCCATACGTCTGCTTCAGCGATGGCGGAGgtgCATTCCTCATTCCCTATCTCACCatgatgtgtctgtgtgccatcccGCTGGTGTTCATGGAGTTTACAGTGGGGCAGTACACAAAAAGAGGACCTGTTGAGGCATTCATCAACATCTGTCCTCTAATGAAAGGTGTGGGTGTGGCTATGGTGATGCTGTCCTTCATCGTGGCCTCCTACAACAACACAGTCCTGACCTGGGTTCTGTACTACCTCTTCCACTCCTTCACAGCCCCGTTGCCATGGCAGCTCTGTAATGCCACCTGGAACATTCCAGAGAACTGTTCCAGCTTCATGGAAAACACCACCACACACCTGCAGTCCGCCACTAAACAATTCTTTGACCATAGGCTCCTGGAAATCACTGAGGGGATTGAGACTGTGGGCCACCTGCGATGGGAACTGGTTGGAATTCTCCTGCTGATCTGGGCCATCCTATTCTTCTGTGTCTTCAAGGGGATCAGATCCACTGGCAAAGTGGTGTACTTCACAGCACTGTTTCCATATGTGGTCCTTCTGGCTCTTCTGTTCAACAATATCCGACTACCAGGAGCCCTGGATGGCATCTTGTTCTTCCTGACACCCAAATGGAACAAACTGGGAGAGATACACGTATGGATTGATGCTACTGCTCAGATCTTCTACTCAATAGGCATTGGATTTGGCTGCTTACTGTCTATGGCCAGCCACAACAAGGTCAACAATAACATCCTCAGGGATGCAATGATTGTCACTTTGGCGAACTCTGCCACCAGTATTTTTGCTGGCTTCGTCATGTTCTCTGGCATCGGCTACATGGCACATGTGCGCCACCTCCAAGTGGAGCACCTGGCTGTTGAAGGACCTGGTTTGGCATTTGTGGTTTACCCAGAGATCTTCAGCACCATGCCTGTCTCTCAGCTCTGggccttcctcttcttcctcatgcTGATGTGTCTCGGCCTGGATAGTCAGTTTGCCCTTGTGGAGGTCATGGGGACTTTCGTTATGGACAGCTTTGGCCCAAAGATTCTCCTCATGCTGAACTATAAAGAGCTGGTGACCCTATTACTCTGCTTCTTGACTTTCCTGCTTGGCCTTCCCTGCATTActcagGGCGGGGTCTACATCTTCCAGCTGTTAGACTATTCTGTTGGCATAACACTGATGCTCACTTCTTTATTTGAAGTCGTTGCTCTAAGCTGGATATTTGgagtATGGCGGCTCTCCATCATGGTGAAAAGGATTCTGGGAAAGCCTCCAAACATCTTCTTTAAGGCCTGCTGGTTGGTGGTCTCTCCGCTGTTGATCGTGGCCATATTGGTCACTGCCATGGTCCAGCACAAACCACTTCTTTACGAGAAGACATATCTCTACCCAGCATGGGCTGAAGGTGTCGCATGGATCATCATCTTTCTGTCCGTTGGCTGGATCCCTCTTGGAGCCATGCATGAGCTTCTTGGAAGGAAAGGCACTTGTTTAGCGAGGCTGAAGGCGTCGGTGACTCCCAGGATCACCCTGGAGGAGGTCTGTAATGTGCCTGTCAATGAAGACCAACACCAGGACCATGTTAAGTCTCTGTACAGCCTCTCTGAGGTCAGTCCTCTACGTGAAGAGAAAGACCGTGGGGACATGTAGGCTCCTGTGTGACCCATCTGCTAGAGCACGGGGTTAGCAATGACATGGTCATGACTACGATTCCAGCTGGGGCATTCTGTCTATATGCTCACAATGTCCATTGAATATGCATCTGAAAAGCAGAAACACTTAATAAAGAAATGTGACACTGTCAA

Function

NR:

description
sodium- and chloride-dependent glycine transporter 2-like isoform X1

GO: NA

KEGG:

id description
K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951075.1 True 2450 mRNA 0.51 19 62451402 62474282

Neighbor

gene id symbol gene type direction distance location
LOC110496672 LOC106588986 coding upstream 16269 62407415 ~ 62435133 (+)
LOC110496670 LOC106588981 coding upstream 302864 62144489 ~ 62148538 (+)
LOC110496875 LOC106588980 coding upstream 441662 61994622 ~ 62009740 (+)
recql4 recql4 coding upstream 459605 61967906 ~ 61991797 (+)
LOC110496665 bop1 coding upstream 528487 61827912 ~ 61922915 (+)
LOC110496878 LOC106588982 coding downstream 9225 62483507 ~ 62484818 (+)
LOC110496879 LOC106588990 coding downstream 27749 62502031 ~ 62570890 (+)
LOC110496880 dennd3 coding downstream 105462 62579744 ~ 62624967 (+)
LOC110496881 LOC106588992 coding downstream 159765 62634047 ~ 62869394 (+)
LOC118941002 NA coding downstream 1889342 64363624 ~ 64364283 (+)
G1571133 NA non-coding upstream 75317 62375700 ~ 62376085 (+)
G1571131 NA non-coding upstream 76935 62373828 ~ 62374467 (+)
G1571128 NA non-coding upstream 82000 62369124 ~ 62369402 (+)
G1571123 NA non-coding upstream 101886 62349247 ~ 62349516 (+)
G1571122 NA non-coding upstream 105481 62345719 ~ 62345921 (+)
G1571228 NA non-coding downstream 8397 62482679 ~ 62482904 (+)
G1571234 NA non-coding downstream 15383 62489665 ~ 62490105 (+)
G1571236 NA non-coding downstream 20739 62495021 ~ 62495274 (+)
G1571238 NA non-coding downstream 23780 62498062 ~ 62498270 (+)
G1571059 NA other upstream 189185 62261624 ~ 62262217 (+)
G1569099 NA other upstream 1835108 60609948 ~ 60616294 (+)
cdk6 cdk6 other upstream 2119102 60256707 ~ 60351422 (+)
G1568568 NA other upstream 2546198 59904164 ~ 59905204 (+)
G1571298 LOC106570403 other downstream 397687 62871969 ~ 62875067 (+)
G1573779 NA other downstream 2426886 64901168 ~ 64902474 (+)
G1573889 LOC106589019 other downstream 2499572 64973854 ~ 64975933 (+)

Expression


Co-expression Network