LOC110496878 (LOC106588982)


Basic Information

Item Value
gene id LOC110496878
gene name LOC106588982
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 62483507 ~ 62484818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951076.1
ATGGAGATTCTCATGTCCTTGGTGGTCAATGCAACACCTGAAGATATAAACAGTACTTCCAACCCCCAGAGGGGGGTGCCCTACCTGAAGAAACTAGCCCACCTGGACGAGGGCCTGTACGAGGAGTTCTACAGCCTGTGGGTGACACTGATGGTGGTCAACACCCTGATGTTCGTGGTGGGTGTGGTCCTTAACAGCCTGGCCCTCTACATCTTCTGCCTGCCCTCCCAGATTTCCTCCGCCCCTGTGGTCTATACCATCAACCTGGCAGTGGCTGACCTGTTGGTGGCGCTCTCGCTCCCTGCCCGTATTGCCCTCTACCACAGCGGTGGAGGGTGTCTGGCCTGCTCCTACGTTCACACGTTCAGCTACTTTGTCAACATGTACTGCAGCATCCTCTTCCTCACCAGTATCTGCGTGGACCGCTATATAGCCGTGGTGTGGGCCGGGGCCGGGCGCCGCTGGAGGAGCCCTGGGGTCGCTAAGGGAGTCAGTGTGGGGATCTGGCTCCTCGCCGTGGTGGTCACCTACTCCTTCCAGACCACGGAGCTGGAGATCAAGGCCACGTCATGCTGTCGACTCACCGCCCTCTTTGCCCTGTCCTTCCTGGAGTTCCTGCTCCCCCTGGTGGTCATCGTGACATTCACACTCAGGGTGGCATGCGCCCTAACCGACCCCAGGCTGATGCCTCAGAGCCAGGGCCGGAGGGCCAGAGCAGTCAGGCTCCTGGTGGCTGTCTTGGTTGTCTTCTCCATCTGCTTCATGCCCTTCCACGTGCGCCAGGCGTTGGTGTATTTCCGGATGGGGGGTGACAGAGCACAGCAGGTGTTGGCGTACCATGCCACTGTGACCCTCAGCAGCCTCAACAGCTGCCTGGACCCAGTGGTCTATTGCTTGGTGACGGACAGCTTCCGCTCGGCCATGCGCCGGGCCTGCAGGAAGAGgccaggggcaggggcagggacagggacaggggcgGAGGTGGAGGCGGAGGTGGAGGCGGAGGCAGAGAGGACCAGTGGAGGGGATGTTGCCAGTGGACTAAGGAGTTCAAAAGGATCAGGGACAGCCATGGCTATCGCTCACAGTGTGGCCACATTGACTCTCACCCCCTGCACCCAGCAACAGAGGGAGATGTCTGCATAG
>TU1797684
ACGAGGGCCTGTACGAGGAGTTCTACAGCCTGTGGGTGACACTGATGGTGGTCAACACCCTGATGTTCGTGGTGGGTGTGGTCCTTAACAGCCTGGCCCTCTACATCTTCTGCCTGCCCTCCCAGATTTCCTCCGCCCCTGTGGTCTATACCATCAACCTGGCAGTGGCTGACCTGTTGGTGGCGCTCTCGCTCCCTGCCCGTATTGCCCTCTACCACAGCGGTGGAGGGTGTCTGGCCTGCTCCTACGTTCACACGTTCAGCTACTTTGTCAACATGTACTGCAGCATCCTCTTCCTCACCAGTATCTGCGTGGACCGCTATATAGCCGTGGTGTGGGCCGGGGCCGGGCGCCGCTGGAGGAGCCCTGGGGTCGCTAAGGGAGTCAGTGTGGGGATCTGGCTCCTCGCCGTGGTGGTCACCTACTCCTTCCAGACCACGGAGCTGGAGATCAAGGCC
>TU1797685
CTAAGGAGTTCAAAAGGATCAGGGACAGCCATGGCTATCGCTCACAGTGTGGCCACATTGACTCTCACCCCCTGCACCCAGCAACAGAGGGAGATGTCTGCATAGCGAgaggagaagagtgagagagagagatgtctgcatggagagaggagaagagtgacagagagagatgtctgcatggagagaggagaagagtgacAGAGAAAGATGTCTGCATGGAGAAAGGGGacgagtgagagagggggatgtctgcatggagagaggagaagag

Function

NR:

description
PREDICTED: G-protein coupled receptor 20-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951076.1 False 1146 mRNA 0.61 1 62483507 62484652
TU1797684 False 458 TUCP 0.61 1 62483613 62484070
TU1797685 True 271 lncRNA 0.53 1 62484548 62484818

Neighbor

gene id symbol gene type direction distance location
LOC110496877 LOC106588989 coding upstream 9225 62451402 ~ 62474282 (+)
LOC110496672 LOC106588986 coding upstream 48374 62407415 ~ 62435133 (+)
LOC110496670 LOC106588981 coding upstream 334969 62144489 ~ 62148538 (+)
LOC110496875 LOC106588980 coding upstream 473767 61994622 ~ 62009740 (+)
recql4 recql4 coding upstream 491710 61967906 ~ 61991797 (+)
LOC110496879 LOC106588990 coding downstream 17379 62502031 ~ 62570890 (+)
LOC110496880 dennd3 coding downstream 95092 62579744 ~ 62624967 (+)
LOC110496881 LOC106588992 coding downstream 149395 62634047 ~ 62869394 (+)
LOC118941002 NA coding downstream 1878972 64363624 ~ 64364283 (+)
wdyhv1 wdyhv1 coding downstream 2157733 64642385 ~ 64644137 (+)
G1571228 NA non-coding upstream 603 62482679 ~ 62482904 (+)
G1571201 NA non-coding upstream 10413 62418728 ~ 62473094 (+)
G1571224 NA non-coding upstream 16998 62466108 ~ 62466509 (+)
G1571133 NA non-coding upstream 107422 62375700 ~ 62376085 (+)
G1571131 NA non-coding upstream 109040 62373828 ~ 62374467 (+)
G1571234 NA non-coding downstream 5013 62489665 ~ 62490105 (+)
G1571236 NA non-coding downstream 10369 62495021 ~ 62495274 (+)
G1571238 NA non-coding downstream 13410 62498062 ~ 62498270 (+)
G1571283 NA non-coding downstream 113611 62598263 ~ 62598765 (+)
G1571292 NA non-coding downstream 137263 62621915 ~ 62623066 (+)
G1571059 NA other upstream 221290 62261624 ~ 62262217 (+)
G1569099 NA other upstream 1867213 60609948 ~ 60616294 (+)
cdk6 cdk6 other upstream 2151207 60256707 ~ 60351422 (+)
G1568568 NA other upstream 2578303 59904164 ~ 59905204 (+)
G1571298 LOC106570403 other downstream 387317 62871969 ~ 62875067 (+)
G1573779 NA other downstream 2416516 64901168 ~ 64902474 (+)
G1573889 LOC106589019 other downstream 2489202 64973854 ~ 64975933 (+)
G1573958 NA other downstream 2609368 65094020 ~ 65095356 (+)
LOC110496878 LOC106588982 other upstream 478 62483507 ~ 62484818 (+)

Expression


Co-expression Network