LOC110496683 (sdha)


Basic Information

Item Value
gene id LOC110496683
gene name sdha
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 64649122 ~ 64663208 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953495.1
AGATGGTATACTCCGGCACCGGCATAAACTGCGACCCAAGACGTGTCAGAGGGGTTTGGTAACGTTGATTTTATCAGACAAAACGAGTACCCATCATGGCTGCGGTGTGTACTGCCTCCCGTGTCCTCGCCAAAAAGGTGCTGTCAGCCAAGGCGCTTCCGGCAGTATCCCAGAGCTCCAGGAAGCTCCACTTCTCAGTCTATGGGAAGAACAACTCTAAAGTATCAGATGGCATGTCCACACAGTACCCTGTGGTAGACCATGAGTTTGATGCAGTGGTAGTGGGTGCCGGCGGAGCAGGGCTTCGTGCTGCTTTCGGTCTGTCTGAGGCTGGCTTCAACACAGCTTGTGTCACAAAGCTGTTCCCCACCAGGTCACACACAGTGGCTGCACAGGGCGGGATCAATGCAGCCCTTGGAAACATGGAGGGAGATGATTGGAGGTGGCACTTCTACGACACGGTGAAGGGATCTGATTGGCTGGGAGACCAGGACGCCATCCACTACATGACAGAGCAGGCTCCACATGCTGTGGtggagCTGGAGAACTTTGGCATGCCCTTCAGCCGTACCGAGGATGGTAAAATCTACCAGAGGGCTTTTGGAGGCCAGAGTCTGAAGTTTGGCAAGGGAGGCCAGGCCCACCGGTGTTGCTGCGTAGCTGACAGAACTGGCCACTCCCTCCTGCACACACTCTACGGGCGATCTCTGAGGTACGACACCAGCTACTTTGTGGAGTACTTTGCCCTGGACCTGCTGATGGAGGATGGAGAATGCAAGGGAGTAATTGCTCTGTGTATGGAGGATGGATCGATCCACCGCTTCAGATCCAAGAACACGGTCATCGCCACAGGTGGTTATGGCCGTACCTACTTCAGCTGCACCTCAGCCCACACCAGCACAGGAGACGGTAATGCCATGGTGACCCGTGCAGGCCTGCCCTGCCAAGACCTGGAGTTTGTCCAGTTCCACCCTACAGGCATCTATGGAGCCGGCTGTCTGATCACAGAGGGTTGCCGTGGCGAGGGAGGAATCCTTATCAACAGTGAGGGTGAGCGCTTTATGGAACGCTACGCCCCCAACGCCAAGGACCTGGCCTCCAGAGACGTGGTGTCCCGCTCCATTACCATCGAGATTCGAGAGGGCAGGGGATGTGGCCCAGAGAAGGACCATGCATACCTGCAGCTGCACCATCTCCCCCCACAGCAGCTGGCCACTCGTCTACCCGGCATCTCTGAGACCGCCATGATCTTCGCCGGCGTGGACGTCACCAAAGAGCCCATCCCCGTCCTGCCCACTGTACACTACAACATGGGAGGAATCCCCACCAACTACAGGGGACAGGTCATCACCCACACAACCGAGGAGGGTGATAAGGTGGTGCCAGGGCTGTTTGCCTGTGGCGAGGCCGCCTGTGCCAGTGTCCACGGTGCCAACCGTCTGGGAGCCAACTCCCTGCTGGATCTGGTGGTGTTTGGACGCGCCTGCGCTCACACAATCGCTGACATCTGCACTCCAGGAGAGAAGCTCTCCCCCCTGAAGCCCAACGCAGGAGAGGAGTCTGTGGCCAACCTGGACAAGCTGAGGTTTGCTGATGGCAACATGAGGACCTCTGAGATCAGAGTGAACATGCAGAAGACCATGCAGAACCACGCTGCTGTGTTCCGTACCGGCAAGGTCCTGAAGGAGGGATGTGACAAGATGGACGCCATCTACCAAACCCTGGACGACATCAAGACCTTCGACAGAGgtATTGTGTGGAACACTGACCTGGTGGAGACCCTGGAGTTGCAGAACCTTATGCTGAATGCTGTGCAGACCATCAACTCTGCCGAGCAGCGCCAGGAGAGCAGGGGAGCCCACTCCAGAGAGGACTTCAAGGACCGTATGGATGAGCTGGACTACGCCAAGCCTCTGGCAGGACAGGTGAGGAAGCCCATTGAAGAGCACTGGAGGAAACACACCCTGTCCACTGTGGATCCAAAGACCGGGAAGGTAACTCTGAAATACAGACCTGTTATTGATAACTCACTGGATGCAGAGGACTGTGCTGCTATCCCTCCCGCCATCCGTTCCTATTAAGCACCATACCGATCCAGTGCAGACTATTTTATTCATGATCAGAATGGATGCTTTTGCAGTTATCATTGATATGAAGTTTCAACCTTGATTTTCCCTTTGCTCATAAATACTATACGTGGTATATTTCACATGTTCAATAATAAACTGGAACATATTGTAACCTTCAGAGAATTGTGCAAAATggagtgttttgttttgtgtgcACTTTCAACTTTCACCGCATTTGCTATAGTTCTTACAggcaaataaatacatatttaataTTTAAATATTGAATGATTCTAGAAATCTGTGTAAAAAGAAAAGCGTAATCacagttttggggggggggggggggggggggtgaaccaTGTTTAAGATATCCACACATAATGCCAATACAATACTCAATTAGTTCATTCTGTCCTTTGCTCAACTGTATGTAAAGTTCTGTTCATCTTGCATGCTTAATGTATTGTTGGTTTTATCTCAATAAAGATGCTCAAATAAA

Function

symbol description
sdha Predicted to enable electron transfer activity; flavin adenine dinucleotide binding activity; and succinate dehydrogenase (ubiquinone) activity. Predicted to be involved in mitochondrial electron transport, succinate to ubiquinone. Predicted to act upstream of or within electron transport chain and tricarboxylic acid cycle. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone). Is expressed in several structures, including adaxial cell; alar plate midbrain region; eye; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Leigh disease; dilated cardiomyopathy 1GG; mitochondrial complex II deficiency; and paraganglioma. Orthologous to human SDHA (succinate dehydrogenase complex flavoprotein subunit A).

NR:

description
succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006105 succinate metabolic process biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006810 transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0008177 succinate dehydrogenase (ubiquinone) activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K00234 SDHA, SDH1; succinate dehydrogenase (ubiquinone) flavoprotein subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953495.1 True 2571 mRNA 0.52 15 64649122 64663208

Neighbor

gene id symbol gene type direction distance location
si:rp71-45k5.4 LOC106570382 coding downstream 367 64644060 ~ 64648755 (-)
LOC110496680 LOC106589004 coding downstream 404285 64017203 ~ 64244837 (-)
LOC118941203 NA coding downstream 622318 64024649 ~ 64026804 (-)
LOC118941202 NA coding downstream 675649 63937285 ~ 63973473 (-)
LOC110496956 rpl23a coding downstream 683534 63965071 ~ 63965588 (-)
LOC110496685 dek coding upstream 10651 64673859 ~ 64677332 (-)
LOC110496684 kdm1b coding upstream 16995 64680203 ~ 64696004 (-)
LOC110496688 LOC106589014 coding upstream 102907 64766115 ~ 64769287 (-)
LOC110496691 LOC106589015 coding upstream 165121 64828329 ~ 64833323 (-)
LOC110496694 LOC106589019 coding upstream 310623 64973831 ~ 64987996 (-)
G1573685 NA non-coding downstream 21185 64627709 ~ 64627937 (-)
G1573673 NA non-coding downstream 45614 64603309 ~ 64603508 (-)
G1573671 NA non-coding downstream 55785 64593087 ~ 64593337 (-)
G1573639 NA non-coding downstream 100263 64543843 ~ 64548859 (-)
G1573471 NA non-coding downstream 151512 64497344 ~ 64497610 (-)
G1573696 NA non-coding upstream 6806 64670014 ~ 64670213 (-)
G1573702 NA non-coding upstream 36586 64699794 ~ 64699993 (-)
G1573703 NA non-coding upstream 37643 64700851 ~ 64701208 (-)
G1573705 NA non-coding upstream 41149 64704357 ~ 64705650 (-)
G1573711 NA non-coding upstream 47546 64710754 ~ 64710983 (-)
G1573054 NA other downstream 634157 64013779 ~ 64014965 (-)
G1572487 NA other downstream 1157953 63435798 ~ 63491169 (-)
G1570695 NA other downstream 2983212 61665328 ~ 61665910 (-)
elp2 elp2 other downstream 3325301 61267281 ~ 61323861 (-)
G1573887 NA other upstream 307083 64970291 ~ 64971167 (-)
G1575088 NA other upstream 646835 65310043 ~ 65311051 (-)
G1575282 NA other upstream 1134422 65797630 ~ 65798675 (-)
G1575457 NA other upstream 1351261 66014469 ~ 66053735 (-)
G1575475 NA other upstream 1392474 66055682 ~ 66056239 (-)

Expression


Co-expression Network