LOC110496684 (kdm1b)


Basic Information

Item Value
gene id LOC110496684
gene name kdm1b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 64680203 ~ 64696004 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572706.2
TACTTTCCCCGTTGTGACACACCGGAAGTAGGTTTTGGTGTCAGTTTAGCCACAGTTTCTATCTTTGGCTTCGCCTTCATTTCCTACttagaataacaacaacaacaaagacaaaTTGATAACAAATAGTTCTTCAAATCGTCTCAAACAAAGGAATAGACTCTGAATCGGAGAGATAGAGCACAGCCAGCTATGCTGACAGATGCAGATTATACAGTGAATGCTTCAGGTGCTCGGCGTGCCAAGAAGAGGACAGCAATGGAGTCATCATCTGGGGATGGTCAGTCGTCCCTTCGCTCCTCCGGTAGACAGGTCAACGTCAGAATGAAGCGCTGCAATAATCCTCCACCTGGACAGACTAAAAGAAAAGCCACTGacacagaggaagaagaggaccaaTCTGAGAAGAAGTACAGAAAGTGTGAAAAGGCTGGATGCTCGGCCACATACCCAGTGTGCTTTGCTAGTGCCTCTGAAAGGTGCGCCAAAAACGGCTACACTTCTCGGTGGTACCATTTGTCCTGCGGGGAGCACTTTTGCAACGAGTGTTTTGATCACTACTATAGAAGTCACAAAGATGGCTATGAGACATATGCATCCTGGAAGAGGGTTTGGACTGGCAATGGGAAGAGTGAGCCCAGTCTGAAAGCTTTCATGGCAGATCAACAGCTTCCATACTGGGTCCAATGCACTAAGCCAGACTGTGGGAAATGGCGTCAGCTAACCAAGGAGATCCAGCTCACTGCCTCACTAGCAGCCACGTATCGCTGTGGCATGAAGTTCAACAATGTCAAGACCGAAGGGCCAGACCAGTGCTCTCTGCCAGAAGATTTGAGAGTGGCGGAGGTGATCGACAGCTGGTGGCATTCCATGTTGATCCTGCCCCCGTTATTTAAGGACAGCCCGGCCAACCCTTTCCTCACAGCCTACTATCCCGACTGTGTGGGCATGAGCCCCTCAGGATCCACCAGCAACCACTCTCATGCTGAGTTGAGGGCAGAGCACTGCAGAGCCATCCCACCACAGATTCCAGGGCTGTGTCCATACTTCCAGCCTTTTTACCAGCCCAACGAGTGTGGGAAGGCCTTGTGTGTGCGACCGGACATGATGGAGCTGGATGAGCTCTATGAGTTTCCAGAGTTTTCCCGTGACCCCACCATGTACCTGGCCCTGCGTAACCTTATCCTGGCCTCCTGGCACAGAGGCTGTAAGGAGGTGCTGACACCCCAGAACTGTGCTCCCCACATCATTGTGAGAGGGCTGGTACGTGTGCGTTGTGTACAGGAAATGGACAGGGTGCTTCTCTTTATGACCAGGAAGGGTCTGATCAACACTGGGGTTCTATCAGTCAAACAGCCCCTGCTTCCCGAGCGCTACCACAACAAGAACGTGATTGTGATTGGAGCCGGGGCATCGGGGCTGGCTGCTGCGCGGCAACTGCAAAACTTTGGCATGCAGGTGGTGATGCTCGAGGCGAGTGAGCGGATTGGAGGGCGGGTGTGGGACGATACATCGCTGGGCGGCGTCACTGTGGGTCGGGGGGCTCAGATTGTGAACGGCTGTGTGAACAACCCAATTGCACTAATGAGTGAGCAGCTCAGCATTAATATGCACAAGCTGGGGGAGAGGTGTGACCTGTTCCAGGAGGGAGGGAGTGCCACAGACCCGGCCATCGATAAGCGCATGGACTTCCACTTTAACGCCATCCTGGATGTGGTGTCAGAATGGAGGAAAGACAAGTCTCAGAACCAGGACACTCCTCTGGGAGAGAAAATCCAGGAGGTCTACAAGACATTCCTTCAGGAGTCTGGGGTCCAGTTCAGCCAGCTGGAGGAGAAAGTGCTTCAGTTCCACCTCAGCAACCTGGAATATGCCTGTGGAAGCACACTGGACCAGgtGTCGGCTCGATCCTGGGACCACAATGAGTTCTTTGCTCAGTTCTCAGGAGACCATACACTGCTGACAGAGGGCTATTCGTCTGTGCTTAACAAACTGGCTGAGGGCCTCGACATCCGCATCAAGAGCCCGGTTCAAGCTATCGATTACTCAGGGGATATAGTCAAAGTTACCTCATCCAATGGGACTCAGTGGACAGCACAGAAAgtTCTGGTGACAGTCCCATTGACTTTACTCCAGAAGAATATCATTCAATTCAACCCTCCTCTTCCTGAGAGAAAGCTGAAAGCCATCCACAGTCTTGGAGCAGGTCTCATTGAAAAGGTTGCTCTGCAGTTCCCGTTTCGCTTCTGGGACGGAAAGATCCAAGGAGCAGATTACTTTGGCCACATTCCACCCAGTCCTGACAAGAGAGGGATGTTTGGTGTGTTCTATGACATGGATCCACAGGGAAAACGCAGTGTCCTGATGTCCGTCATCAGTGGTGAAGCTGTGCCTTCTATCAGGGACATGGAGGACAAAGATGTCGCTGATCAGTGCGTGAAGGTGCTGCGTGAACTCTTCAAAGAGCAGGAGGTCCCCGATCCGGTGAATTACTTTGTGACTCGGTGGAGCAGAGACATGTGGTCTCAGATGTCATACAGCTTCGTGAAGACAGGGGGCAGCGGGGAGGCCTATGACATCATTGCTGAAGATGTGCAAGGAAAGGTGTTCTTTGCTGGGGAGGCGACCAACAGGCACTTTCCTCAGACGGTAACAGGAGCCTATTTGAGTGGCGTCCGAGAAGCAAGTAAAATAGCTGCTTTGTAACTCCTTCCCTTTTGAGCAGTCACACGATACCAGCATAAAGACATCGACGTTGTACAGCGCAAAGCATTCGTTCC

Function

symbol description
kdm1b Enables several functions, including FAD binding activity; histone demethylase activity (H3-K4 specific); and zinc ion binding activity. Involved in histone H3-K4 demethylation. Located in nucleoplasm. Part of nucleosome. Biomarker of retinoblastoma.

NR:

description
lysine-specific histone demethylase 1B

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K19413 KDM1B, AOF1, LSD2; lysine-specific histone demethylase 1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572706.2 True 2780 mRNA 0.52 21 64680203 64696004

Neighbor

gene id symbol gene type direction distance location
LOC110496685 dek coding downstream 2871 64673859 ~ 64677332 (-)
LOC110496683 sdha coding downstream 16995 64649122 ~ 64663208 (-)
si:rp71-45k5.4 LOC106570382 coding downstream 31448 64644060 ~ 64648755 (-)
LOC110496680 LOC106589004 coding downstream 435366 64017203 ~ 64244837 (-)
LOC118941203 NA coding downstream 653399 64024649 ~ 64026804 (-)
LOC110496688 LOC106589014 coding upstream 70111 64766115 ~ 64769287 (-)
LOC110496691 LOC106589015 coding upstream 132325 64828329 ~ 64833323 (-)
LOC110496694 LOC106589019 coding upstream 277827 64973831 ~ 64987996 (-)
LOC110496698 LOC106570363 coding upstream 360652 65056656 ~ 65121056 (-)
LOC110496890 LOC106570358 coding upstream 818938 65514942 ~ 65601901 (-)
G1573696 NA non-coding downstream 9990 64670014 ~ 64670213 (-)
G1573685 NA non-coding downstream 52266 64627709 ~ 64627937 (-)
G1573673 NA non-coding downstream 76695 64603309 ~ 64603508 (-)
G1573671 NA non-coding downstream 86866 64593087 ~ 64593337 (-)
G1573639 NA non-coding downstream 131344 64543843 ~ 64548859 (-)
G1573702 NA non-coding upstream 3790 64699794 ~ 64699993 (-)
G1573703 NA non-coding upstream 4847 64700851 ~ 64701208 (-)
G1573705 NA non-coding upstream 8353 64704357 ~ 64705650 (-)
G1573711 NA non-coding upstream 14750 64710754 ~ 64710983 (-)
G1573712 NA non-coding upstream 15121 64711125 ~ 64711635 (-)
G1573054 NA other downstream 665238 64013779 ~ 64014965 (-)
G1572487 NA other downstream 1189034 63435798 ~ 63491169 (-)
G1570695 NA other downstream 3014293 61665328 ~ 61665910 (-)
elp2 elp2 other downstream 3356382 61267281 ~ 61323861 (-)
G1573887 NA other upstream 274287 64970291 ~ 64971167 (-)
G1575088 NA other upstream 614039 65310043 ~ 65311051 (-)
G1575282 NA other upstream 1101626 65797630 ~ 65798675 (-)
G1575457 NA other upstream 1318465 66014469 ~ 66053735 (-)
G1575475 NA other upstream 1359678 66055682 ~ 66056239 (-)

Expression


Co-expression Network