LOC110496706 (LOC106589031)


Basic Information

Item Value
gene id LOC110496706
gene name LOC106589031
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 65755121 ~ 65767988 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572743.2
GTTTGCTTACTTTCAGTTTCACAGTGCAAGGGTTCCTCCACAGTGAGGAGACGTCAAACGTAAtgcattctttctctctctctctctctctcattgggtTGATAAGTGCTAGAGCCAACGCAACCGTGTGAATTTTCAGTTTTACACAGCCACCATGGAGGAGGACGCGGGACAATCTATCCCATTCAAGTACCCCGCCTCTGACTTCTTGTTGACTGTCGGAGGTATGTTGTTTTTTCTCCTGGATGTGGTACTAGACGTGTGGGCGGTGGTGACTTTCTATCAACAAGAGGCCTACGTGTTCATGGGACTGCTGATGTTTCTACTACTAGGCTCCTCAGCCCTGGTCCAGGCTTTCAGCTGGCTGTGGTACCACTATGACAAGGACAGCACTGAGACCAGGACAGAGAGCCTTGTGAAAAGCCTTCACTCACTCAAGATCCTTCATGTGTTCCAGATGGGAGTCTACCTCAGATATGCTGGTCTTGTGAGGATCTCGATATGTGGCTTCTGCTGTAGAAAGCGTTACATGGAGGGCAACGCCGTGTATCTGACCCATGACCTTAGCCTGCTGCGCCTCATCGAGACCTTCTCTGAGAGCGCGCCACAGCTTGTCCTCATGATTACCATCATCATccagaggggagaggtggagccCATTACAAtCTTGAAGGCACTTGGTTCAGTGTCTGCCATCGCCGTCAGCGTGACCATGTATCACCGCTCCCTGCGTTCCTTCCTCCCAGACAAGGCCAAGCAGGGCTGGGGCTCCTCAGTGGTCTACTTCCTGTGGAACCTGCTCCTGATTGGTCCACGTGTGGCAGCAGTCGCCCTCTTTGCTTCGGTCTTCCCCTGCTTCATCGCTGCCCACTTCCTGTCTTCCTGGATGGTTCTATTTTTTGTCGCCTGGCAACTGAAGACAAACTTCATGGACAGCGGCGGCGGAGAATGGCTCTACCGGGCCACCGTAGGTCTCATCTGGTACTTTAGCTGGTTCAGCATAGTGGAGGGGCACACCAGGCAGCGGAGCACCATCTACCACACCTGGATAGGAGTGGATATTGGGATGCTTTGTGGTTTTTGGGTGTGGCAGATGATGAAGAACCCTCCAAATCTTGAACTGCCACTAGATCCCTATGTCATCTTTGTCATTATGATCTCACTCTACATAGCTGGACTCTGTCTCAAGGTGACATACTACAAGTTCTGTCACCCAAAGATTACAAAGCAGGAAGAAGTTGAGTGTCATCTCGAGCTGATGTCGGAGTCTGTGGTGGTCCCCCCAAATGGGGAAGATGTGGTTGACTTTAGGTTTATGGGTCATACAGAGCGTCCAGAACCGTCCGTCAGGGTCAATAAAAGGATGAGGAATTTAGCTGGTAATTTTTACTCTTAATCCAGATTATCAGATGGCTCCTACGCATTGAGAAGACTGTATGGGCTTGTTCAACATTGCAGCCGATAACCCAGCCAGGCAACTGCCAACGGACTGATCTACAAATGACCTTGGctcataaataactactcattatttGTTGATCAGTCACAATTTAAACACACAATGAGTGAAAGGTCTGTCTGTTTTCAAATCCatccttgtacttgattgatgaattcaTGTCAGTAATTAGTagggaactcccctcacctggttgtctaggtcttcagGGAAAGGGAAAAACCAAAAACCCACACTCAGctctccgtggaatgagttttacACCCCTGCCCTACTTAAACGAACCAGCTCTACAGCTTGAAACACTGAGAAATGTTGACGCTTTCATTAAAATGACTGGAATGATTTGTTCTATGAAGACGAGGATGGCGATATGAGACAGTCCTGTTTGGCACAGTGCATTTCTAAATATGAAGGTAAACAGTGCATTTCTAAATATGAAAGTAAACATTATAGTAATGTTTATCATGGTCATGAACTTGTCTCATTAATGTGACCTTGTGAGTACAGCTAATCAGGGTTACTTATTGACAGTGGTGGAACAAAATAATAAATTGACATACTTTAGACTTTAATAAACGTAAAGATACTTTTACTTTAGTAAttttcacccagtaaaatactacttcagtaactctagaagtatttggtttgaaatatacctAAGTATCCAAAgaaaatggaattgctaaaatatagttaagtcaaaagtagttcattattaagcaaaccaaacaat

Function

NR:

description
XK-related protein 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572743.2 True 2198 mRNA 0.46 3 65755121 65767988

Neighbor

gene id symbol gene type direction distance location
LOC110496703 NA coding downstream 134921 65610940 ~ 65620200 (-)
LOC110496890 LOC106570358 coding downstream 153220 65514942 ~ 65601901 (-)
LOC110496698 LOC106570363 coding downstream 634065 65056656 ~ 65121056 (-)
LOC110496694 LOC106589019 coding downstream 767125 64973831 ~ 64987996 (-)
LOC110496691 LOC106589015 coding downstream 921798 64828329 ~ 64833323 (-)
xkr8.3 xkr8 coding upstream 2927 65770915 ~ 65781022 (-)
epb41a LOC106589039 coding upstream 126996 65894984 ~ 66039471 (-)
LOC110496714 LOC106589042 coding upstream 283647 66051635 ~ 66068096 (-)
LOC118941206 NA coding upstream 312466 66080454 ~ 66094549 (-)
LOC118941204 NA coding upstream 345629 66113617 ~ 66117779 (-)
G1575320 NA non-coding downstream 10725 65744034 ~ 65744396 (-)
G1575318 NA non-coding downstream 12972 65740693 ~ 65742149 (-)
G1575169 NA non-coding downstream 38481 65713768 ~ 65716640 (-)
G1575289 LOC106589037 non-coding downstream 45526 65703376 ~ 65709595 (-)
G1575278 NA non-coding downstream 65270 65680748 ~ 65689851 (-)
G1575332 NA non-coding upstream 370 65768358 ~ 65768692 (-)
G1575333 NA non-coding upstream 1063 65769051 ~ 65769287 (-)
G1575335 NA non-coding upstream 8429 65776417 ~ 65776728 (-)
G1575336 NA non-coding upstream 10457 65778445 ~ 65778752 (-)
G1575088 NA other downstream 444070 65310043 ~ 65311051 (-)
G1573887 NA other downstream 783954 64970291 ~ 64971167 (-)
LOC110496680 LOC106589004 other downstream 1510307 64017203 ~ 64244837 (-)
G1573054 NA other downstream 1740156 64013779 ~ 64014965 (-)
G1572487 NA other downstream 2263952 63435798 ~ 63491169 (-)
G1575282 NA other upstream 29642 65797630 ~ 65798675 (-)
G1575457 NA other upstream 246481 66014469 ~ 66053735 (-)
G1575475 NA other upstream 287694 66055682 ~ 66056239 (-)
ppp1r11 ppp1r11 other upstream 470110 66238098 ~ 66242725 (-)
G1575541 NA other upstream 533427 66301415 ~ 66305176 (-)

Expression


Co-expression Network