XLOC_034336


Basic Information

Item Value
gene id XLOC_034336
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 914720 ~ 1036789 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069084
GATTTTCTCCCGCTCCTCTTGATGAATCCAACATTTGTAATGAGCAGCTGTTCTCTGCCCTGCCTCTGAGTTCTTCTGATTTGTCCACTGCTCTGAGACTGACAGTAATGAGCACCATTCGTGTGAGGAGCTGCAGAAGATGAGGATGGTGACGCACATCTGTCAACCacatttacattgaaaaacaaGAGAGGATTGGGCTCAATCCAACACAGGCTAATTGAGGATACAGACTCAAGTCTACATTTCTGTGGACAGCAGAATGTGTAACCACAGGAACTGTTCTTCGCCGGACTCAAAGCGGACTCCTGTTTACTCTGCATCCCAAGTCCATCGACATACAAGCCAAGCTGCAGTGCAAACTGGTAGCCATCCATACGCAGGTAAGCTGTCAGCTGCTGGCACTGAACAGATGGACAGAAGCCGTCGGTGGTGTCATACCACtccatagcgtttgttttaaagacaaaatgcagccatatgtatctCTGGGTgcataattcacgctctccagaaatgcagaCAGGGGTACGCATCCACATTGAGCCTCCGCTGGCTTGATCTTCGACAGTTTCctgattataaagttttatttgtcattatttgtgtttattgtgTGCTTCTGCATCACGAGCAGCTCGTCAGATCTGTAGCTGATTGTGTCAGAGCCCTTCTGTTCAAAATACACAGGAAAAGCAAGCACTGGAGATGATTTGTTGTGTTCCTGTTGTACTGTACCCCTATTGAAACGCAACCCCAAAACCATGCTACATATTGAACTGTGACTTATATGAATAATTACATCCTTAAAATCTGGACATCGATCAGTGGAACTGAAACCaacaacattttaaacaataaccGGTCTGTTTCAGAGGTTTGGCCGGCCGGTGCATCTCTAAATCGATTGATCATGTGTTCAGATGCTGGAGATGTTATTAGTGAAGCATGCAGAATGCTGATAATCTCAGATCATGTTTGAGGCATTACAGTAAACTGTACATAAAGATAAGCAGTTTCATGGGAAAACACAGTACGAgcagtctacacacacacatttgaccTTAATTCAGTGCCGTTTCTTGAGTTTCTCCCTCTGATCTTCATGCTGAAGTGttgttgatttattgatttgtttatctGTGTTAAGCTGCTCTTGCTCAGTCTGCATTTGTTTAATAAAGATCAGATACATGAGGATTAATTAGGAAT
>TCONS_00068645
CGCGTCATCTTGTGAAACGCGTCCACTGCGTTGTTTTGTTGCGTACATCTGGCAACCCGCCATTAACGGTCGAGTTGGCGTTATGTATGCTAGTCATCGCAAATTGCCGCGTTAAAAGTCACCGTCGTCAACTTTAAGATGAATCCAACATTTGTAATGAGCAGCTGTTCTCTGCCCTGCCTCTGAGTTCTTCTGATTTGTCCACTGCTCTGAGACTGACAGTAATGAGCACCATTCGTGTGAGGAGCTGCAGAAGATGAGGATGGTGACGCACATCTGTCAACCacatttacattgaaaaacaaGAGAGGATTGGGCTCAATCCAACACAGGCTAATTGAGGATACAGACTCAAGTCTACATTTCTGTGGACAGCAGAATGTGTAACCACAGGAACTGTTCTTCGCCGGACTCAAAGCGGACTCCTGTTTACTCTGCATCCCAAGTCCATCGACATACAAGCCAAGCTGCAGTGCAAACTGGTAGCCATCCATACGCAGGTAAGCTGTCAGCTGCTGGCACTGAACAGATGGACAGAAGCCGTCGGTGGTGTCATACCACtccatagcgtttgttttaaagacaaaatgcagccatatgtatctCTGGGTgcataattcacgctctccagaaatgcagaCAGGGGTACGCATCCACATTGAGCCTCCGCTGGCTTGATCTTCGACAGTTTCctgattataaagttttatttgtcattatttgtgtttattgtgTGCTTCTGCATCACGAGCAGCTCGTCAGATCTGTAGCTGATTGTGTCAGAGCCCTTCTGTTCAAAATACACAGGAAAAGCAAGCACTGGAGATGATTTGTTGTGTTCCTGTTGTACTGTACCCCTATTGAAACGCAACCCCAAAACCATGCTACATATTGAACTGTGACTTATATGAATAATTACATCCTTAAAATCTGGACATCGATCAGTGGAACTGAAACCaacaacattttaaacaataaccGGTCTGTTTCAGAGGTTTGGCCGGCCGGTGCATCTCTAAATCGATTGATCATGTGTTCAGATGCTGGAGATGTTATTAGTGAAGCATGCAGAATGCTGATAATCTCAGATCATGTTTGAGGCATTACAGTAAACTGTACATAAAGATAAGCAGTTTCATGGGAAAACACAGTACGAgcagtctacacacacacatttgaccTTAATTCAGTGCCGTTTCTTGAGTTTCTCCCTCTGATCTTCATGCTGAAGTGttgttgatttattgatttgtttatctGTGTTAAGCTGCTCTTGCTCAGTCTGCATTTGTTTAATAAAGATCAGATACATGAGGATTAATTAGGAAT
>TCONS_00069087
GCGTCATCTTGTGAAACGCGTCCACTGCGTTGTTTTGTTGCGTACATCTGGCAACCCGCCATTAACGGTCGAGTTGGCGTTATGTATGCTAGTCATCGCAAATTGCCGCGTTAAAAGTCACCGTCGTCAACTTTAAGATGAATCCAACATTTGTAATGAGCAGCTGTTCTCTGCCCTGCCTCTGAGTTCTTCTGATTTGTCCACTGCTCTGAGACTGACAGTAATGAGCACCATTCGTGTGAGGAGCTGCAGAAGATGAGGATGGTGACGCACATCTGTCAACCacatttacattgaaaaacaacttgtgtgtgtgtggtgaagc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069084 False 1212 lncRNA 0.43 4 914720 1021545
TCONS_00068645 False 1329 lncRNA 0.43 4 914720 1036789
TCONS_00069087 True 325 lncRNA 0.47 3 1008039 1036788

Neighbor

gene id symbol gene type direction distance location
XLOC_034335 si:cabz01080528.1 coding downstream 36247 864492 ~ 878473 (-)
XLOC_034334 NA coding downstream 59758 828990 ~ 854962 (-)
XLOC_034333 CABP4 coding downstream 91225 808916 ~ 823495 (-)
XLOC_034332 rela coding downstream 110205 778297 ~ 804515 (-)
XLOC_034331 drap1 coding downstream 161489 742517 ~ 753231 (-)
XLOC_034339 NA coding upstream 18885 1055674 ~ 1061239 (-)
XLOC_034340 dctn1a coding upstream 26183 1062972 ~ 1108935 (-)
XLOC_034341 NA coding upstream 75514 1112303 ~ 1136586 (-)
XLOC_034342 si:dkey-31g16.2 coding upstream 103016 1139805 ~ 1148539 (-)
XLOC_034343 NA coding upstream 114421 1151210 ~ 1152972 (-)
XLOC_034329 NA non-coding downstream 702941 210475 ~ 211779 (-)
XLOC_034328 NA non-coding downstream 741082 172766 ~ 173638 (-)
XLOC_034345 NA non-coding upstream 131058 1167847 ~ 1168164 (-)
XLOC_034346 CT030017.1 non-coding upstream 166332 1203121 ~ 1203239 (-)

Expression


Co-expression Network