LOC110496727 (LOC106589058)


Basic Information

Item Value
gene id LOC110496727
gene name LOC106589058
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 66693338 ~ 66696327 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572765.2
ACTACCTACTACCTTCAAAACACAGTCAACCTCTAATACCACTGTGGGAACTTAGCTACTGAAGTTATTCTCAGTTTACCAACTTGTATACCTATCGCAAACCAGCTTGATTGACATTGGAGCTCCAGGCTTCTCTTGGATACTAAGGACTTTGACGGAAGGTTCTACTATACAATGGCAGGTGATTGCAGCAGAGTGATGTTAGACGTGGAGAGTGGCCCTGTGTACCCTGCAACGAGCGTGACCCTGGTACGGGAGAAGTCCACACACCGGTGGAGGCTGTGTGGTGCCCTGCTGGCCATGGCACTGTGTGTCTCAGCTGCACTTTTCGTTACCTGGCACGCCAAGAGACAAGATCAGGTCGAGGAAGTTGATGAACTTCAGCATACACTGAGACAACTCTCTGTAAACAGAAAGGCTGCCATTCATCTAGAAGGGGAGTACAACGGCACTGGAAAATACAAGAccacagtggagtggacagacgATGAGGGCCAGGCAAACTCACAGGGGGGTCTTAAACTCAACAACAACGAGATTGTGATCCCCCAGCCGGGCCTATACTTCGTCTACAGCCAGGTCTCTTTCCGCGTCAGCTGCAAGGCCGACCCCAAGCACCCTAACAACCAGGAGATGGTTCACCTGAGTAACACGGTCAAGCGCTGGTCCCCAAGCTACGGCACCGAAGACGACAAGGAGTACAAGACGCTGCTCAACTCTGTACGCACCGTGTGTAAGAAGTCTTCCAACAGCGAGGCGAGCGAAGGACAGTGGTATAATGCAGTGTATGTGGGAGCCGTGTTCAACCTGGAGAAGGGAGACATGCTCCAGACAGTCACAGAGAACAGGCCCCATCTGGAGAGTGGTCATGGGAAAAACTTCTTTGGCGTGTTCGCCTTGTGAGACGGACGAAAATGGCATGACGATTGAGAGGAAGGCTACGTCCCAAATCACCCTATACTTTAACTATGggttcactacatagggaatagggttcactacatagggaatagggtgcagtttgGGACGTAGCCTCAGTGTGAGGGGGGAAAAGGTTCATACAGTAGGAGGGGTTAAACAGCTAAATCCACGATGAAGAAGAGGATAATGGAAGGTTACCTGAAGGTTACCTGATAGGTTACCTGATAGGAGTCAGGGCCGTTTCATCTACTGAGGTTGACTGAGGTTAAGGCATCGTGTTGTTTGGTGTTAAAGccaatgcattttattttttatttgttttactcTTCTGTCAAAGATGAGGAATTATAgactgtttgtgccatcatgccatcATGCCACTCCTTGTCATGCCTAACATTGGCTTGCATGACAGCATGATGTAGGCAAGAGCACAAGCAGATGTGGAACCAGGCTAGACAAATGACACCGATCTATCTAAACTGTAGCAGTTTGTTTATATATACTTGGGGTTTATTGTTTAACAAATGTGTTGCCATGGTGTTACCATGACAGTAAGTGTCTATGATGCTAATGCTGGACTACAATCCACAGCACATAA

Function

NR:

description
tumor necrosis factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572765.2 True 1522 mRNA 0.48 4 66693338 66696327

Neighbor

gene id symbol gene type direction distance location
ddx39b uap56 coding downstream 379439 66294113 ~ 66313899 (-)
ppp1r11 ppp1r11 coding downstream 450613 66238098 ~ 66242725 (-)
LOC110496716 LOC106589044 coding downstream 478131 66180396 ~ 66215207 (-)
LOC110496892 LOC106589045 coding downstream 513747 66170696 ~ 66179591 (-)
LOC110496715 LOC106589043 coding downstream 525667 66136708 ~ 66167671 (-)
LOC110496726 LOC106593810 coding upstream 51855 66748182 ~ 66775081 (-)
LOC110496895 NA coding upstream 90721 66787048 ~ 66788994 (-)
LOC110496725 LOC106589055 coding upstream 106543 66802870 ~ 66810492 (-)
LOC118941007 NA coding upstream 161610 66857937 ~ 66870926 (-)
LOC118941008 NA coding upstream 361797 67058124 ~ 67058673 (-)
G1575708 NA non-coding downstream 977 66691952 ~ 66692361 (-)
G1575707 NA non-coding downstream 1393 66691591 ~ 66691945 (-)
G1575706 NA non-coding downstream 1872 66691139 ~ 66691466 (-)
G1575705 NA non-coding downstream 4363 66685211 ~ 66688975 (-)
G1575704 NA non-coding downstream 9643 66682916 ~ 66683695 (-)
G1575711 NA non-coding upstream 1746 66698073 ~ 66698297 (-)
G1575721 NA non-coding upstream 17274 66713601 ~ 66714052 (-)
G1575732 NA non-coding upstream 40321 66736648 ~ 66737616 (-)
G1575736 NA non-coding upstream 45777 66742104 ~ 66743908 (-)
G1575737 NA non-coding upstream 50122 66746449 ~ 66746662 (-)
G1575541 NA other downstream 388162 66301415 ~ 66305176 (-)
G1575475 NA other downstream 637099 66055682 ~ 66056239 (-)
G1575457 NA other downstream 639603 66014469 ~ 66053735 (-)
G1575282 NA other downstream 894663 65797630 ~ 65798675 (-)
G1575774 NA other upstream 130255 66826582 ~ 66826877 (-)
G1575977 NA other upstream 506874 67203201 ~ 67203487 (-)

Expression


Co-expression Network