LOC110496726 (LOC106593810)


Basic Information

Item Value
gene id LOC110496726
gene name LOC106593810
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 66748182 ~ 66775081 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953579.1
TGAAGTGTTTTTCCACGACACACCTAAAATATGTGAATGATGTTGTACTGTACAGAGAGCTTCAAGAGACAACACGGCAAGCTGAGACGGAGTTGTGGGTGGCAACACAGACAATAGGCGTTTCTGGTTCATGCAAGTGTGAGATTTAAAAAGGTCTGAATGAAGTTTGAGACAGAGAAACTTTCTTGGTGCTTGTGATTTCGTTTCGTCTGTCTGTATGCTTGTTACGTATTCATAGATATTCAGTAACACATGCAGCGTCAGGACTCTGTTGGTTATTGAGAGCACtcggtggagagagaagaggcatCCGCGACTCCGTGTCTTGACACgggtgtaatcattagtacaaaacgttttgcaacgggaACCATTTACTACAAACGAAAACGTTTTGCATTAAAACGAGACTTTATATTGGACAAATCCAGCTAGGTCTctccccgtttcgttccgtttACTTCCGTTTTGGTTCCTAGTTAACAATAATACACAACAGGCAATGCTCTGACGTCACAAGTGAGACTCTCAACTAAAGCAAGCCTAatcgaatatatatatatatattatggttCAATCAGTGGATATACTTCCCGGGACAGAGAACTCTTTGTTTGGAGCCAAAATCATGAAAGCACAGGTGGCAGAGTAACCGCAGGACATCGAGGCTGTTCTTTGCTGGGGTTCTCCCTCCAGACTATTTCTCTCTTTCATCCTCCCTTTcccttcactctctttctccacctgcacatcagtccctccatccttccttGTCTCTTAACTCCACCCAGAGGCACTGCCGTCATGCGTCGGTACAGCTCCGAGGGGTCTCTACTCGATATGGATTTCCTGCCGCGGAGGAAAGTATCCGTGAAGAGCCACAACTACCACAGCCGGGACGGGGAGTCAGGTACCTACAACCCCGACCTGGAAGGTGACGAACTGGATGGGCGAACCACCTCTTTCCCCCCTACCCCTATCATCGTGGAGCCTGGAGCCAGCCACGGGAGGGGGGAGCTGAGCAGGGATCACAGCGTCAGTGTGGAGAACTTCACAGAACTGGGGAAGCTAGAGGGCAAGGGATTTCTTGGAGTGGTGAACCTCAGTGAAGGGTGTAGGGCATATAGTGACGGGCAGTTGGCGCCGGGGACGACGAGCCGCAGCACAGAGAGCGTGGGCAGCGACAACCAGCCACcgtcctctccctcgctctcaacCTCTGGCTTCAGCCCCTTGTCCTTGAAGTCACAGCAACGGTCCCACACCAGAGCCAAGCTGTCAGCAGCCAAGCTACACCTGAAGAGCCTGTTTGGGCAGAGTCCCCATTCATCACATTCCAACCTGTTTAACCCAGaacagaaagaacagagagacagTGATAAAGAGCGGAGGTCTCGCCACCCGTTGATGCACCAGTGGAGTCAGGTGGGCCACAGCAACGCCAAGTTCAGTCGGGTGGAACTTGATAAGTGGGCTGAATCGCTGGACGACCTCCTGGCCAGTCGGAtgggtgtgtctgtgtttggAGCATTCCTTCGCTCAGAATTTAGTGAGGAGAATCTGCAGTTCTATCTGGCCTGTGAGCAGTACAGAAACTCGTCCAACAACTTCAGCCTGCACAGACGGGCCAAGACGATCACTGCCACCTATATTGATGCGGGGGCGCCACGAGAGgtGAACTTGGACAGTAAGACCAGAGACTTAACCACACAGCTCCTACAGGCCCCATCACACACCTCCCTGTCCCACGCCCAGAAACGCATCTACTCCCTCCTGGATACAGACTGCTACCCTCGCTTCCTCCAGTCCGACATCTACCTCACCTTGCTGGGCCAGGCTGACTAGAGACTAAAGGCTCCATTCAATCTGTATCGTGGAAGTTCAGCACTATAGCCTCGATTGAAAGGTATAGGCAAATGTGCCTGCGTTTGCGGAGACTACATTCACGTTAAACGCTGTATATGATGGCTCAAtctgaaattacctttacatttcaatcacgcCGAGTGTTGAATTACTGCAATAAGAATTGAATGGAGACCTAAGGCTGCGTCCCTattcctccactctccacccttctcctaaAGTGTACACTTGCACACTATCTTACATGGATTTAACAATAGTGGAAAGGACACTCCAATGCAGTGCTTTTGAAATCTATGATGGGTGTGTGTAAGTGCTTACTGGAAAAGGGTGGAAAACAGAGACCTATCTGTCGTGGAAATTGGATTGGACAGTTGCAGGAGATGCCGTTACATAATGTGGAGTTAAAGAGGTTTTGGGGTTTAGTCATTCCAGTTAAGgagcagggttgtgttcatttggGCATGGAACAGAAaaacttttaaaaatgtttttcaaagcaaaaaaaaaa
>XM_036953580.1
CTGAAGTGTTTTTCCACGACACACCTAAAATATGTGAATGATGTTGTACTGTACAGAGAGCTTCAAGAGACAACACGGCAAGCTGAGACGGAGTTGTGGGTGGCAACACAGACAATAGGCGTTTCTGGTTCATGCAAGTGTGAGATTTAAAAAGGCTGTTCTTTGCTGGGGTTCTCCCTCCAGACTATTTCTCTCTTTCATCCTCCCTTTcccttcactctctttctccacctgcacatcagtccctccatccttccttGTCTCTTAACTCCACCCAGAGGCACTGCCGTCATGCGTCGGTACAGCTCCGAGGGGTCTCTACTCGATATGGATTTCCTGCCGCGGAGGAAAGTATCCGTGAAGAGCCACAACTACCACAGCCGGGACGGGGAGTCAGGTACCTACAACCCCGACCTGGAAGGTGACGAACTGGATGGGCGAACCACCTCTTTCCCCCCTACCCCTATCATCGTGGAGCCTGGAGCCAGCCACGGGAGGGGGGAGCTGAGCAGGGATCACAGCGTCAGTGTGGAGAACTTCACAGAACTGGGGAAGCTAGAGGGCAAGGGATTTCTTGGAGTGGTGAACCTCAGTGAAGGGTGTAGGGCATATAGTGACGGGCAGTTGGCGCCGGGGACGACGAGCCGCAGCACAGAGAGCGTGGGCAGCGACAACCAGCCACcgtcctctccctcgctctcaacCTCTGGCTTCAGCCCCTTGTCCTTGAAGTCACAGCAACGGTCCCACACCAGAGCCAAGCTGTCAGCAGCCAAGCTACACCTGAAGAGCCTGTTTGGGCAGAGTCCCCATTCATCACATTCCAACCTGTTTAACCCAGaacagaaagaacagagagacagTGATAAAGAGCGGAGGTCTCGCCACCCGTTGATGCACCAGTGGAGTCAGGTGGGCCACAGCAACGCCAAGTTCAGTCGGGTGGAACTTGATAAGTGGGCTGAATCGCTGGACGACCTCCTGGCCAGTCGGAtgggtgtgtctgtgtttggAGCATTCCTTCGCTCAGAATTTAGTGAGGAGAATCTGCAGTTCTATCTGGCCTGTGAGCAGTACAGAAACTCGTCCAACAACTTCAGCCTGCACAGACGGGCCAAGACGATCACTGCCACCTATATTGATGCGGGGGCGCCACGAGAGgtGAACTTGGACAGTAAGACCAGAGACTTAACCACACAGCTCCTACAGGCCCCATCACACACCTCCCTGTCCCACGCCCAGAAACGCATCTACTCCCTCCTGGATACAGACTGCTACCCTCGCTTCCTCCAGTCCGACATCTACCTCACCTTGCTGGGCCAGGCTGACTAGAGACTAAAGGCTCCATTCAATCTGTATCGTGGAAGTTCAGCACTATAGCCTCGATTGAAAGGTATAGGCAAATGTGCCTGCGTTTGCGGAGACTACATTCACGTTAAACGCTGTATATGATGGCTCAAtctgaaattacctttacatttcaatcacgcCGAGTGTTGAATTACTGCAATAAGAATTGAATGGAGACCTAAGGCTGCGTCCCTattcctccactctccacccttctcctaaAGTGTACACTTGCACACTATCTTACATGGATTTAACAATAGTGGAAAGGACACTCCAATGCAGTGCTTTTGAAATCTATGATGGGTGTGTGTAAGTGCTTACTGGAAAAGGGTGGAAAACAGAGACCTATCTGTCGTGGAAATTGGATTGGACAGTTGCAGGAGATGCCGTTACATAATGTGGAGTTAAAGAGGTTTTGGGGTTTAGTCATTCCAGTTAAGgagcagggttgtgttcatttggGCATGGAACAGAAaaacttttaaaaatgtttttcaaagcaaaaaaaaaa

Function

NR:

description
regulator of G-protein signaling 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953579.1 False 2377 mRNA 0.49 6 66748182 66775080
XM_036953580.1 True 1864 mRNA 0.51 6 66748182 66775081

Neighbor

gene id symbol gene type direction distance location
LOC110496727 LOC106589058 coding downstream 51855 66693338 ~ 66696327 (-)
ddx39b uap56 coding downstream 434283 66294113 ~ 66313899 (-)
ppp1r11 ppp1r11 coding downstream 505457 66238098 ~ 66242725 (-)
LOC110496716 LOC106589044 coding downstream 532975 66180396 ~ 66215207 (-)
LOC110496892 LOC106589045 coding downstream 568591 66170696 ~ 66179591 (-)
LOC110496895 NA coding upstream 11967 66787048 ~ 66788994 (-)
LOC110496725 LOC106589055 coding upstream 27789 66802870 ~ 66810492 (-)
LOC118941007 NA coding upstream 82856 66857937 ~ 66870926 (-)
LOC118941008 NA coding upstream 283043 67058124 ~ 67058673 (-)
sox4a LOC106589061 coding upstream 333497 67105914 ~ 67112583 (-)
G1575737 NA non-coding downstream 1520 66746449 ~ 66746662 (-)
G1575736 NA non-coding downstream 4274 66742104 ~ 66743908 (-)
G1575732 NA non-coding downstream 10566 66736648 ~ 66737616 (-)
G1575721 NA non-coding downstream 34130 66713601 ~ 66714052 (-)
G1575711 NA non-coding downstream 49885 66698073 ~ 66698297 (-)
G1575762 NA non-coding upstream 15028 66790109 ~ 66791051 (-)
G1575765 NA non-coding upstream 22069 66797150 ~ 66798183 (-)
G1575747 NA non-coding upstream 24076 66799157 ~ 66802471 (-)
G1575780 NA non-coding upstream 61459 66836540 ~ 66836924 (-)
G1575802 NA non-coding upstream 101829 66876910 ~ 66877138 (-)
G1575541 NA other downstream 443006 66301415 ~ 66305176 (-)
G1575475 NA other downstream 691943 66055682 ~ 66056239 (-)
G1575457 NA other downstream 694447 66014469 ~ 66053735 (-)
G1575282 NA other downstream 949507 65797630 ~ 65798675 (-)
G1575774 NA other upstream 51501 66826582 ~ 66826877 (-)
G1575977 NA other upstream 428120 67203201 ~ 67203487 (-)

Expression


Co-expression Network