LOC110496725 (LOC106589055)


Basic Information

Item Value
gene id LOC110496725
gene name LOC106589055
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 66802870 ~ 66810492 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572762.2
AATAGGCAGCGTGTAGCCATGGTTgttggtaactagtgacaaccggGTTCCTCTGATAACAAATGTGTTGGAGCTGTGCACCTGCGCACAGGCTCTTTATTGCAAATTGAGTGTTGATGTCAAGTGTAGATTCACTGGTTCTGAGAGCTCGTTCTGCAATGGGACTCGAGTAAGACCGTGGCGCGGAAGCGAGCACTCCGGACAAGgtGTATGAGGTGTGATGGCGTCGTGCTCTGAGGCCTGTAACTCAGGGTCTGGATGTGGGGCAGGGTCCTCAGGCTGTGAGGTAGGTTCTAGCTGTGCCTGTCTGCAGTTTGGGGTGCGTTCCTACCTGCACCATTTCTATGAGGGGTGCAGCACTGCATCAGGGTGGGAGAGAGACCCTGAGGGAGTGGGGGACGTCCAGACCTTGAGATCGCCCCTGAGGTGGAGCTCAGCACTCTGGAAGgtctctctGGCCCTTGGTCTCCTGATGGTGACCTCTGGTCTGGTCAGTCTGTCCGTGGGTTACTCCGGCCCCACCAGGATCGAGTCCTTCGGGGAGGGGGACCTCCTCTTCATAGACACCCAGGCTGTCAGTTTTAACAGGGGTCTGCATCACTGCGTGGCGGCCGGGATCGGTCTCACCTGCCTGGGAACGGGTCTGACCGTGGCGGGCCTCCTTTTCTGGTCCTTCTCCAGGAGCCGATTGAAAGAGAGGCTATAtcggagagagatagagaagaagggagggatagaggggggggcacagggaggaggacagggggagatggGGACGGCTGTTATGAAGGCCCCTGGAGCAGGGGAGGGGAAGGTGCCTGCCACCCTGACCAAAGTGGAAACGGTCCAGCCATCAGGAAGATAATCCCCATAGGTTTTAAAAGGTCTTTATGTGGTGCACATGTGTCCTCTTTTAAAATGAGCTGAATTTAGTCAAATCGCACATGTTGAAAAGTCTATAAGCTATATAAATAATGGTCACATGTTGAAAAGTCTATAAGCTATTTGAATGGTGGTCTTGATAAGGAGTGATTTGGTACAACTCTCATACATTTGTTCTTTGGATTTACGCATCAATGATTTTTGCATTGTGTTCCACCTCACTGTTGTAAAATATAAGAAATGGACTTTTCTCATGTCATTTTAGAACAATTTGGGAGACCAATTTTACTCAATTCCATAGCACTTTTTCTCCTAAGATGAATTGTGTGTTGGGTAAAGCAATCCGTGTGGAATTGAATACATACAATGCATACatgaaaatactgtatatata
>XM_021572763.2
TACCCATTGCATCGGACGTGTTGAATTACAGAACTGAATAGCCGACGGAAACGAATGTGTAGAAACCTGCCCCTCCAAAATAGTACGTTATTCACTCTGTGGTCAGTAGACTTGTCTCTACACTTGACGGTTTGGAGTTGGATATTCGATACAGCCTGTGGAACTCAACTCCTCTTTGTAATTTGATTTCCACGAAACCATCACTGCCCAACACCATGTGCTACAGGCACGGTCACTGAAAGGCACTGCCGGAGTGTCGAGgtGTATGAGGTGTGATGGCGTCGTGCTCTGAGGCCTGTAACTCAGGGTCTGGATGTGGGGCAGGGTCCTCAGGCTGTGAGGTAGGTTCTAGCTGTGCCTGTCTGCAGTTTGGGGTGCGTTCCTACCTGCACCATTTCTATGAGGGGTGCAGCACTGCATCAGGGTGGGAGAGAGACCCTGAGGGAGTGGGGGACGTCCAGACCTTGAGATCGCCCCTGAGGTGGAGCTCAGCACTCTGGAAGgtctctctGGCCCTTGGTCTCCTGATGGTGACCTCTGGTCTGGTCAGTCTGTCCGTGGGTTACTCCGGCCCCACCAGGATCGAGTCCTTCGGGGAGGGGGACCTCCTCTTCATAGACACCCAGGCTGTCAGTTTTAACAGGGGTCTGCATCACTGCGTGGCGGCCGGGATCGGTCTCACCTGCCTGGGAACGGGTCTGACCGTGGCGGGCCTCCTTTTCTGGTCCTTCTCCAGGAGCCGATTGAAAGAGAGGCTATAtcggagagagatagagaagaagggagggatagaggggggggcacagggaggaggacagggggagatggGGACGGCTGTTATGAAGGCCCCTGGAGCAGGGGAGGGGAAGGTGCCTGCCACCCTGACCAAAGTGGAAACGGTCCAGCCATCAGGAAGATAATCCCCATAGGTTTTAAAAGGTCTTTATGTGGTGCACATGTGTCCTCTTTTAAAATGAGCTGAATTTAGTCAAATCGCACATGTTGAAAAGTCTATAAGCTATATAAATAATGGTCACATGTTGAAAAGTCTATAAGCTATTTGAATGGTGGTCTTGATAAGGAGTGATTTGGTACAACTCTCATACATTTGTTCTTTGGATTTACGCATCAATGATTTTTGCATTGTGTTCCACCTCACTGTTGTAAAATATAAGAAATGGACTTTTCTCATGTCATTTTAGAACAATTTGGGAGACCAATTTTACTCAATTCCATAGCACTTTTTCTCCTAAGATGAATTGTGTGTTGGGTAAAGCAATCCGTGTGGAATTGAATACATACAATGCATACatgaaaatactgtatatata
>TU1802943
AGTGTTGATGTCAAGTGTAGATTCACTGGTTCTGAGAGCTCGTTCTGCAATGGGACTCGAGTAAGACCGTGGCGCGGAAGCGAGCACTCCGGACAAGgtGTATGAGGTGTGATGGCGTCGTGCTCTGAGGCCTGTAACTCAGGGTCTGGATGTGGGGCAGGGTCCTCAGGCTGTGAGGTAGGTTCTAGCTGTGCCTGTCTGCAGTTTGGGGTGCGTTCCTACCTGCACCATTTCTATGAGGGGTGCAGCACTGCATCAGGGTGGGAGAGAGACCCTGAGGGAGTGGGGGACGTCCAGACCTTGAGATCGCCCCTGAGGTGGAGCTCAGCACTCTGGAAGgtctctctGGCCCTTGGTCTCCTGATGGTGACCTCTGGTCTGGTCAGTCTGTCCGTGGGTTACTCCGGCCCCACCAGGATCGAGTCCTTCGGGGAGGGGGACCTCCTCTTCATAGACACCCAGGCTGTCAGTTTTAACAGGGGTCTGCATCACTGCGTGGCGGCCGGGATCGGTCTCACCTGCCTGGGAACGGGTCTGACCGTGGCGGGCCTCCTTTTCTGGTCCTTCTCCAGGAGCCGATTGAAAGAGAGGCTATAtcggagagagatagaga
>TU1802944
TACAGAACTGAATAGCCGACGGAAACGAATGTGTAGAAACCTGCCCCTCCAAAATAGTACGTTATTCACTCTGTGGTCAGTAGACTTGTCTCTACACTTGACGGTTTGGAGTTGGATATTCGATACAGCCTGTGGAACTCAACTCCTCTTTGTAATTTGATTTCCACGAAACCATCACTGCCCAACACCATGTGCTACAGGCACGGTCACTGAAAGGCACTGCCGGAGTGTCGAGgtGTATGAGGTGTGATGGCGTCGTGCTCTGAGGCCTGTAACTCAGGGTCTGGATGTGGGGCAGGGTCCTCAGGCTGTGAGGTAGGTTCTAGCTGTGCCTGTCTGCAGTTTGGGGTGCGTTCCTACCTGCACCATTTCTATGAGGGGTGCAGCACTGCATCAGGGTGGGAGAGAGACCCTGAGGGAGTGGGGGACGTCCAGACCTTGAGATCGCCCCTGAGGTGGAGCTCAGCACTCTGGAAGgtctctctGGCCCTTGGTCTCCTGATGGTGACCTCTGGTCTGGTCAGTCTGTCCGTGGGTTACTCCGGCCCCACCAGGATCGAGTCCTTCGGGGAGGGGGACCTCCTCTTCATAGACACCCAGGCTGTCAGTTTTAACAGGGGTCTGCATCACTGCGTGGCGGCCGGGATCGGTCTCACCTGCCTGGGAACGGGTCTGACCGTGGCGGGCCTCCTTTTCTGGTCCTTCTCCAGGAGCCGATTGAAAGAGAGGCTATAtcggagagagatagaga

Function

NR:

description
neurensin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572762.2 False 1276 mRNA 0.50 4 66802870 66810173
XM_021572763.2 False 1331 mRNA 0.49 4 66802870 66810492
TU1802943 False 613 TUCP 0.59 4 66803424 66810064
TU1802944 True 751 TUCP 0.56 4 66803424 66810466

Neighbor

gene id symbol gene type direction distance location
LOC110496895 NA coding downstream 13876 66787048 ~ 66788994 (-)
LOC110496726 LOC106593810 coding downstream 27789 66748182 ~ 66775081 (-)
LOC110496727 LOC106589058 coding downstream 106543 66693338 ~ 66696327 (-)
ddx39b uap56 coding downstream 488971 66294113 ~ 66313899 (-)
ppp1r11 ppp1r11 coding downstream 560145 66238098 ~ 66242725 (-)
LOC118941007 NA coding upstream 47445 66857937 ~ 66870926 (-)
LOC118941008 NA coding upstream 247632 67058124 ~ 67058673 (-)
sox4a LOC106589061 coding upstream 298086 67105914 ~ 67112583 (-)
LOC110496729 LOC106589066 coding upstream 515378 67325870 ~ 67337196 (-)
srfbp1 LOC106589067 coding upstream 530896 67341388 ~ 67348984 (-)
G1575747 NA non-coding downstream 399 66799157 ~ 66802471 (-)
G1575765 NA non-coding downstream 4687 66797150 ~ 66798183 (-)
G1575762 NA non-coding downstream 11819 66790109 ~ 66791051 (-)
G1575739 NA non-coding downstream 47428 66752695 ~ 66755442 (-)
G1575737 NA non-coding downstream 56208 66746449 ~ 66746662 (-)
G1575780 NA non-coding upstream 26048 66836540 ~ 66836924 (-)
G1575802 NA non-coding upstream 66418 66876910 ~ 66877138 (-)
G1575804 NA non-coding upstream 70961 66881453 ~ 66891836 (-)
G1575805 NA non-coding upstream 82622 66893114 ~ 66894046 (-)
G1575814 NA non-coding upstream 97838 66908330 ~ 66910169 (-)
G1575541 NA other downstream 497694 66301415 ~ 66305176 (-)
G1575475 NA other downstream 746631 66055682 ~ 66056239 (-)
G1575457 NA other downstream 749135 66014469 ~ 66053735 (-)
G1575282 NA other downstream 1004195 65797630 ~ 65798675 (-)
G1575774 NA other upstream 16090 66826582 ~ 66826877 (-)
G1575977 NA other upstream 392709 67203201 ~ 67203487 (-)
G1576222 NA other upstream 590956 67401448 ~ 67441976 (-)

Expression


Co-expression Network