XLOC_034339


Basic Information

Item Value
gene id XLOC_034339
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 1055674 ~ 1061239 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069088
tatatatatatatatatactattaggCTGTCTATACtaatttctcacaattctgactttttaaaccacattttttttcattatttttttgcaaaacaatttTTGAATGGCAGTTTTGCAATTTtgactgttgcatttttttaaaaagtctgaatTAAAAATTCATCCAATTATTTCTGTTAAGATTGCAGCTTTATTTCAGCTAAGATTTTACAGGTTTTCTCACAATTTAGTTAATcgaacacttttttcagtgaactTGTGCTTTCACAATCCTGAGAAAATCATCAGATGACTAGAAGGTCTAAGTtgtgaaatataaaacaaatataatcacACAACAGAAATAGTCAcgattttaacaaacaaaatgtgtTCATTATACATTTGTGCAACtttatatattgtgtttttttttttttttaggcttttACAAAGATAAAATAGCTTTTTATTGTGGCTTTCAGGTGTAAGTTTAAAGCTTTTCTCACAGATTTTaacttttaaatcacatttttttgcaatattaccttcaaactacAAGATATAAAGTTGCACAATgttagaataaatatatatatatatatacacacacacacagacacatgtatATAGTTCGTTAGGATTGTGACTATTTCTGTTGtactatttattgtttgttttgtgcagaattctgactttatcgcacaatttttttatttttgtaaattcacattttgaaaaatgcaacacaattaaaattgcaaaaaaaaaactgaattaaaaaagatttattgtaagaatagagaaaataagctctcacaattctgactttttaatcacattttttcattatttttgcaaatgatcttaaaattgtaatttgtaaAGTTGCACCAGTTTAGAATAAATACATCTTAATGTTATGACTgcaacttattttattattattgagagGTTACAGGTTTTCTCACTGTTTAATCTGACAGTTTTAGCAGTGAAGTTGTGAGTTTGGAGGTTTTCACAATCCTGAGAAAATCATTACTAGAAGGTCTAAGTTGTGAAATATAAAACAGCTGTAATCACACAACTGAAATAGTTGCAATTTTAACAAACCCAAAGTTTATCTATTATAAATTTGTGCATCTTTATATCTTGCTGTCTTTAAGGGGGTTTTACAGGCTTTGCTAACTTAAATACATTCTACACAATACAAAATTTTTGCACTATTTTTGGAAAACCTTGTAAACAGACAACTTCAAACTACAACATATAAAGTTGTACAAAGttcgaataaaaaaatatacattttgtttgtGGCCTGGTGGTTAAGTGCGCCGACATAcaagcaccatggtgctcacgatTCCCTTTGCCGACCCTTAtcttctctctgctcccaatattTTTCTCTTTATAACCTCCACTGTCCTCTCCAACTAAAGTGACAACTggctaaaaaaattattgttaaaaaaaggaTTGCGACTTTATTTCAGTTGTgagatttattatgttttttgcataattctgactttcacacaattttctcattatttttagcAAAAAAACTTGAAATTAGGCAGTCAAACAAGTCTGAATAAAGCTGTATATGTATTATTGTTAGGCTTGTGACTCTTTCAGCTGTGtgatttctcacaattctgactttttaaacacaatttttgcattatttttgccAAAAATCTTTAAATTGCGAGATGTAAAGATGCATTAatttagaataaataattttattttagtttagacAGAAACTTTGTTTcagctgaaaaaaatatatagtttcttTTCTTCACAATTTTGGACTTTTCAACCAGAAAATGTTTGACATGTTgctcatttctgactttttttttaaatataaagcctAAATTATGAGATCTAAAAGTCACGGTTACCTTTCTATATATTTTATCCTGTTCTGGAAATGAACTTCTGCATATGGTAAAGCTTCTGAAACTTTATACGGTTCACATTTGGTCTTACATTTGGCATAATAAGAGTCATCAAGGTGTATTAGTTATTTAGTGAATGACCTTGATCTGGTGGAGGAGCTGAAATGAGGAAATGTAGAAAGGCTGTAGGGAAATCCACATTAAATAGCACTAATTAAAACTCATTTTTCACTGATAAGTTAACTTTTGCATTGTAGTTTTGCACCAGTAATTGATTATTTCATCAGCGCTTCATTATAAAGGACCAACTCAATCTAGAGGTAACCACTATTTAATCCTACATTTACACACGGCTGCTTTGTGTAATTCATGTTTTATGCAAGACTGaagcacaagtgtgtgtgttttcagtcacTGTTGTCTGTGTTTAACATCTCCGAGCTTCAGTTGATTTACTCTTCATCATGTTGGTTCAGTGTTTTAATAGTTTATGCATTTGACGCGTTTCTTATGGAGACGACTGCAATAAAGATGGAAAAACAAGACATTAAATGCATTTCTTTGGTTTATTGACAGAAATCtataatacatgaatgaatgaacaagaaaatgcagagtttttaaaagcataatttcctttaaattatttgaagtcccttttatttttgttatttagaaATTAAAGCATATTTTTACAGAAATTTTCCTCTTTAAATTCAGAATTCAGAGTGCCCTGCTCACATAATTTGGAgtagatgaataaaaaaaaggaTCCTATTTTCCAGAGGAACCCCTCTAAATGTTAAGATGCATGTGAAATATTGCACATATTCATGATCACTGGTTGATTTACTCGTCATCATCATGTTGGCTCAGTGTTTTAATAGTTTATGCCAGGGGTGCACAAACTTTTCCATATAAATGGCCAAAAGCCCAAAatcattgagagccgtgggccGACACTTGCCTTAggtaatttccttatttatttcatAGAGtttaaaagtcaataaaaaacattactaatGCAGTATAATGATCAAGTATAGCTGattacaataaaaaacataacataacCCAGTGGAGTTGAATGCAGAGTGCACTAGTCTAGCAGAATCTGCCTTcatttgctcactgatgtctctgcattgtcctctatccgtcCAGTGACAGTAcgcacatttcaaaacaaaatctgatttatttaagtGAAACAGCTCCCTTCAGTTTGTTGTAGCTtagcaaaaaagaaaacaaaaaaatgaacacaggctctttctgaaaatgtacccctgcatacatttctggagagcaccaaatttGTCCctggagctgttttttttttttttattgcagtttttgtgtatccaccagaggctgctgtgtacactttttcagatcttagATTTCTCTcctgagtgccattcatgcctgctgttctcacggttatccaccagaggccgctgtgtaagctttttcagatcttaaatttctctcgatagtgccattcgtgcctgctgttctcatataaatccaccagaggccgttgtcgactgactgactgtttgtctgatacccccccaccccccgtCAAAACCCAgacgatagtgtttttaaaagcaatcccgACAAAGAAAAGCCATCACAGCTGCCTGATTTTtgccacgttttcagatcttcccacattctcaccctgttgtttacttgtttattttatttgttggcttttgtttttgtcttacctgctttctggaaccattctagGCCAGAGTCGAGCTTTGTGTTCGTGGTCAACTCCTTATTGTGTCTCAAGTCCTGCGagccactagacaaactggtaacagcgggaaaggaATGCCGTCATACTTCTGGCtgcataatttgtgatctccagaagtgtatatggggtacatattcagaatgagcctgtgttgcaatgaAAGCTTACAGTAAATTAGAAATAAACCATCCTGataattctccctctcttctcagatttGCCAAACCAAAGCTTAACATGGGCCAATCTTGACCTGCGGGGACTAGTTTAAGCATCTCTGGTTTATGCATTTGACAAGCTTCtggaggaaaaaacaaaacacaaaatgctctttttgttgttgtttattgacAGAAATCTATAAAACTTGAATAAGAAATTGCAGATTTTTAAACGTATAATTCCCTTTGATTTAAAGtgcatttatttctgtgattcagAGATTAAATCATCAAAACAAACGTAAAGCATTATTTAAAATGGCTTTGATTTGCAGAAAGCATTGATTAATTGACAGCTGTTTAAATCCTTCATTCATTAGAAACTCTATCTAGAGATGAATCACTATAATAGAGGATCTTTAATCCCACATTTACACTATAAAGATGAGGAGAAGGTGTAGAACATCAACACAGTTTTACTTCATTGTCAGAAATCTACAAAACATAAATGAACCTGAAATCACAGCATTCGTTAAAGTATAATTCCCTTTCGTTAATGATTTACAGCGCATTTGATTGTCATTATTAGGAGATTGAATCATAAAGAGCAAATGTAAACAGTTATTTAACCCTAAAGCCACCTTCTGGACACTTTCGGGCTTCAATATCTCAAGTGTGAACCCaattttcatgcatttattttctaaataaggTCATATAAATGTATTGGTCAAACTTCCAAATTACGTAATTAGAGATTTTATTttggcattgttttttttttgtgattaataTGCCTCTAAAAGTacagatttttaaacaaatgcttttattttgactGTTCTCTATTCATTTCCTATAGGAAAAATGATGTTATGATAAAGTCCTCTTTACAGTTAGATTTGCTGAAACAactcatgttttttttgtgtttgctcAAATAGCAGACTTATAAAACATAGCCAAGTCCTTAAATTACTGATTTAAAAGaaactatttaaacaaaacagaaaagaaaatgatcTTTCAACCACTTTAACCCTCTTTGTCTGTGTGTGCTCAAATAATAAACTTGTAAATGTCAATatacaggtcacactttacaatcaggGTTCATAACAGTGCTTGTACAGCATTTAACAATCATAGATCAACATTCACTGATGAAATTAATAACTTAGCagatgcactgtgagttaacTTATaccaccttattgtaaagtgttactaatatataataaactgCTCAGATTATGGACAAGCCTAAATAAAGTGGCTCTAAATGGCCACAGATATCCTTGGGGAAGCTGGAGGGTTAAAATGACTGCGTTTGCCAGAAGCCTTCATCAGTTGACCGCTGTGTAGATCATATTAAACGTGCAGCACAGAGTGATCAGAAAAAGGCGCTGAAGAAATCCAGCGTGTCCTCTTCAGTTTCTGTTTCATTGCAGAATGGGGGAGGAATGAACTGCTCCGGGTCCGGGATTCCCGTCACTGCGTTAAAATAGCTGGAAAACACAAACAATACGAGTTCACGGCCAAGCAAACACTGCTGGATGAAGGAACACAGTTAAAGTCCACATCAAATCAATACTAGCCATGTCGATGCTGTTAGCTCACACTGCTAATTTCG

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0002520 immune system development biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:1901532 regulation of hematopoietic progenitor cell differentiation biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0048856 anatomical structure development biological_process
GO:0048592 eye morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0002376 immune system process biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0042670 retinal cone cell differentiation biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069088 True 5468 lncRNA 0.33 2 1055674 1061239

Neighbor

gene id symbol gene type direction distance location
XLOC_034336 NA coding downstream 18885 914720 ~ 1036789 (-)
XLOC_034338 NA coding downstream 64060 990491 ~ 991614 (-)
XLOC_034337 NA coding downstream 69917 984904 ~ 985757 (-)
XLOC_034335 si:cabz01080528.1 coding downstream 177201 864492 ~ 878473 (-)
XLOC_034334 NA coding downstream 200712 828990 ~ 854962 (-)
XLOC_034340 dctn1a coding upstream 1733 1062972 ~ 1108935 (-)
XLOC_034341 NA coding upstream 51064 1112303 ~ 1136586 (-)
XLOC_034342 si:dkey-31g16.2 coding upstream 78566 1139805 ~ 1148539 (-)
XLOC_034343 NA coding upstream 89971 1151210 ~ 1152972 (-)
XLOC_034344 CT030017.2 coding upstream 96371 1157610 ~ 1163829 (-)
XLOC_034329 NA non-coding downstream 843895 210475 ~ 211779 (-)
XLOC_034345 NA non-coding upstream 106608 1167847 ~ 1168164 (-)
XLOC_034346 CT030017.1 non-coding upstream 141882 1203121 ~ 1203239 (-)
XLOC_034347 NA non-coding upstream 233573 1294812 ~ 1305257 (-)

Expression


Co-expression Network