sox4a (LOC106589061)


Basic Information

Item Value
gene id sox4a
gene name LOC106589061
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 67105914 ~ 67112583 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572761.2
GTAGTGTTGAACGTTATGTTTACAGTATACTGGCAGACCGATAAGGAAAGAGAGGACTATGAAAAAGTGCGACACTTCCATTCTTCCACATGGTTCTGTCACTGCTAAGGCGAGCTGCGCAGACAGCGATATTATACCTCTCATAGGAAAGTTGCAGTGTTGTTTTCAGCAGCGAAGTGCTCTAGGTATCGCAGGGCGAGTTTTCAGTCGCACTGGCAGTTGAACGTTTGATTGCAGAACGTTGAAGGATTTTAACGTGTTATTTCGTTCTCTCTTTTTTTTGAAGATATACTCGCACTAGCGACTAACTGCGCAGCGTCTCCAAAACGGACTGAAAGATAGAGGAGACTTGCAATAACTTTTACGCAATCCGTCCAGTGTGGTTCCATAAACATACGTTTATTGAGTGACTGAAAGAAAACCGATGATATAACAGCATTGGCAACTTTTACGCACTTTGTCACCATAACATAATTCTGAACAGCACTTTTTTTGGTACGTTTTCTGTCTAaccgagagattgagaaagaaagaaagaaagagaaacgaTGGTACAGCACATGAGCCACACAGAGAGCACAGATTCATTCTCTCCTGGTGGGGACGGCACCGATACCGGAGATATGGACTTGGACATGGACGCGTCTCCGACTCCCGGGTCTCCGCTATCCTCCACGGGAGGGGACCGAGGCAACGTCGCCTGGTGTAAAACCCCCACGGGACACATCAAGAGACCGATGAACGCATTTATGGTGTGGTCTCAGATCGAGAGGAGAAAGATCATGGAGCAGAGCCCGGACATGCACAACGCTGAGATTTCCAAGAGGTTGGGCAAGCGCTGGAAACTGCTCAAAGACACAGATAAGATCCCGTTCATCCAGGAAGCAGAGCGGCTGAGACTCAAGCACATGGCCGACTATCCTGACTACAAGTATCGGCCACGGAAGAAGGTTAAGACGCCCAGCTCCAAGACAGAgcggggggagaggggagagaaaggcgCGGATAGGAGCAGGGGTTCTAAGTCCTCATCGAAAAGAGGCTCTGGGTCTAGGGGGAACAGCAGAGTGCCCAAGCCGGGACAGGGGAGCGTCAAGCTGCCTACCCAGGGGCAAGAGTGTGCGTCTCCCGCGGATCACCACACGCTCTACAAATCCAGGTCAGTGACTGGTGCCCGGCAGATACCAGACAAGCCAGCCAGGCGCGGTTACATGTTTAGTGGGGGAGGGAGCTTGGACAGCGGGCCACCCTCTGTGGGAGTCCCAGGGAGTCCCGCCCTGAGCAGCTCGTCTGAGTCCTGTGACCCGATGAGCCTGTATGAAGACCAGGCGACGGGGGCGAACAAAGCACTTTCCTCCAACCCTTCAACATCCTCACCATCATCGGCAGTCCGCCTCAGGTACACACGTGCGTCCTCTCCAACCCCGTCCgcctctcactcctcttcctcctccctctcttcttcctcggATGAAGAGCTGGAGGATGAGCGGTTCGAGCTACAGCCGAGTCCCGGGTTTGAGAGCATGTCTCTGGGCAGCATGGGGCCATGTGAGTCGGAGCTCGACAGGGACCTGGACTGGAGCTTCGGCGAGTGTGGGGCGGGATCTCACTTTGACTTCCCCGACTACTGCACCCCCGAGGTCAGCGAGATGATCTCGGGAGACTGGCTGGAGTCCACCATCTCCAACCTCGTATTCACTTACTGAGCGGCGGAAaggagagagaccacagagaaCAAGAGGGAAAGAGAAGCCCCGCCCCGCGCAAAACTAAAACCCAGTGAGTGTGAAAGAAGAATCTTCAGACATTCTTTCAGATTATTAGGGAGAGTGAAATGTGAGCTAAACGAACCCTCGTTTTGGAAAGAATAGCCTAATATTAATGACATGTGTTTAGGTTAAATTGTGCAGAATGTGTGTATAAAAACATAATCGTCTGTTCCATGTGGGTATTGACAAAGACAGGAACCGGGGACAGACAAGGGCACATTGTTGCCTGGTGCGCCGAACAGAAGGAAAGTGCATCGCTTGCAtttggagagagaagagagaaggactCTGAGCACGCCTCTTTTagaagtgacacacacacagacacacacacacacacagacttactGAACTGAAGTATTCAACCGGCTGGCAGGAGGAGGTTTCTAGTTTGATGGTGAACATGACTATGGGTAAATGGGCTTTTGGAGAGCTTGATGTTGCCATGGAGATGAAAGCAGTATAAGTGACCCACTTCAGTTGTTGTTCTCTGTGTGGGCGGGGTTTATGTAGGTGATATTCAGGTGGGGTTTTTCCTGAAGCTTAACATGCATGCGCTCCCTTGTGGAGTAGTCTGCACTGTTACATTGACTGATGCATCTGAAAATATGTTTATTACAATGTCATTACCGCGctgattgtgtgtgcgtgtgtgagtgagcgcgcgagtgtgtgtgtgtgtgtgtgtgtgtgtgcgatcaCGGAACACAGTTCACAATCACCAGCTTTCCTCTCAACGGCAGGACTTTTAATGAATTAACAACTCAAACTCAGAATCTTTTCTCTGAAACCTTTTACACTCTGAATGCACATTTCAGGACCAATTCCCTTACTGCGCAACGCCTAGCACATCTGGCTGTAGTTATTCTATATCAGATgacgtttttttttatatatatcgaTGTATTTACACCAGccgaacatgtttttttttttttttaatactttgAAGTATTGTTATTGTATAATAGGTCTTGTTTGTGTGTAAACCATGCACCTGGCTGTATCCCTGTGCAGGAGGGCTAGAAGTGTATCTTATTTAAAATGTCGATATCTCTCACTTTTTTTAAAGGAGAACTCAGTAAGTGTGTCATTTTTCTATATGTGTATTTTTTTGTACGATATCTATGGGAGGGAGTGCCAGTGGGTGGTTGCTTTGATTCCCGATGTTCAAAGCCAGAGGGTCCGTTGTCACATATATTCTGCTCCTTTATACAATGTTTACACTTGACAGTATCGCGCCACGTGTTTCTTAAAGGCACAGTGTCTGTATTTACACCAGCCAAGTAAACACATCGACACCCCGCTACGTCACCAGAGCGTCAGCTGCACCCAGTGACTGTGTTTCAACAGTGGATTTGCATAACTTGGACCCAGATGTATTTGTGCTATCTTGTCAAGTGCTTGTCAAGGAGTGGCacgatggcacaaacagactggcgcCCAGGCTACAGTATATCAGAATTGttcaagagagagatagagatgctgTTGGATTGAGAGGAAAACATCGGTATGCTTTTGTTGATAGGTTTGATTTGAAACCACTGGATGGAATGTGACACTCACACATTATAAATGCCTATTTGAgtcagagggaggtggagggaggtggaggaaggtggagggaggtggagaaaggtggagggaggtggagggaggtggagaaagGTGTATGAAGTGCTTCGATCATCTATCATTGCGCAATTGCATAATAAGAGTATTTAATCGTTTTTCTACCTGTTGGCTTACTTGGCTAAGACTAGCTAGCTAATTGTTTTTCCTGTATTATGGCATGGCAAATTAGCAATTGTATTTCAGATTCAGGTATATGTATAGCTGTtgtgttttagattttttttttttaagaatatcGAGGATATTTATGTTTATTGACTGTACTATAATGCAGATACGATTGTGTTTCTATGTAAAATGATCAACGACAGACACTAAAATTGCCATCTTTTGTCATTATGATGTTTATAATGATTGTGGTCCAGGAtctttattttttcatttttttttttttctccatttgtgCAATATGCTGTGTGTATGATCATGTTTCCTCCAATCGTACCATATCTCATTTGAATATAGAACTCAACGCCAGCCAATCGGGTCAACGACTGCCTCAGACCTCTATTACagagcattttttttatttgtttgtatgtttgtttgttttgtttttttttccaaGACGGAAATAAAAATCAGCTGGAACTGAA
>TU1803062
TTGTGTGTAAACCATGCACCTGGCTGTATCCCTGTGCAGGAGGGCTAGAAGTGTATCTTATTTAAAATGTCGATATCTCTCACTTTTTTTAAAGGAGAACTCAGTAAGTGTGTCATTTTTCTATATGTGTATTTTTTTGTACGATATCTATGGGAGGGAGTGCCAGTGGGTGGTTGCTTTGATTCCCGATGTTCAAAGCCAGAGGGTCCGTTGTCACATATATTCTGCTCCTTTATACAATGTTTACACTTGACAGTATCGCGCCACGTGTTTCTTAAAGGCACAGTGTCTGTATTTACACCAGCCAAGTAAACACATCGACACCCCGCTACGTCACCAGAGCGTCAGCTGCACCCAGTGACTGTGTTTCAACAGTGGATTTGCATAACTTGGACCCAGATGTATTTGTGCTATCTTGTCAAGTGCTTGTCAAGGAGTGGCacgatggcacaaacagactggcgcCCAGGCTACAGTATATCAGAATTGttcaagagagagagcttttgtggagcgatgggtaacgatgcttcgagggtgactgttgatgtgtgcagaaggtccctggttcgcgcccgggtaagggcgaggggacggtctaaaatttgtactgttacattgatgctgttgacccggatcactggttgctgcggaaaaaggaggaaggtcaaaaggggggtaagtgtaacggatgtgaaacggctagct

Function

NR:

description
PREDICTED: transcription factor SOX-4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572761.2 False 4006 mRNA 0.46 1 67108578 67112583
TU1803062 True 708 lncRNA 0.47 2 67105914 67109833

Neighbor

gene id symbol gene type direction distance location
LOC118941008 NA coding downstream 50029 67058124 ~ 67058673 (-)
LOC118941007 NA coding downstream 237652 66857937 ~ 66870926 (-)
LOC110496725 LOC106589055 coding downstream 298086 66802870 ~ 66810492 (-)
LOC110496895 NA coding downstream 319584 66787048 ~ 66788994 (-)
LOC110496726 LOC106593810 coding downstream 333497 66748182 ~ 66775081 (-)
LOC110496729 LOC106589066 coding upstream 213287 67325870 ~ 67337196 (-)
srfbp1 LOC106589067 coding upstream 228805 67341388 ~ 67348984 (-)
fndc5b LOC106589070 coding upstream 294729 67407312 ~ 67441367 (-)
LOC118941009 NA coding upstream 430978 67543561 ~ 67558111 (-)
eif3i eif3i coding upstream 549542 67662125 ~ 67668116 (-)
G1575894 NA non-coding downstream 35925 67072242 ~ 67072653 (-)
G1575886 NA non-coding downstream 56604 67051682 ~ 67051974 (-)
G1575885 NA non-coding downstream 56980 67051379 ~ 67051598 (-)
G1575867 NA non-coding downstream 80795 67027519 ~ 67027783 (-)
G1575854 NA non-coding downstream 101058 67007184 ~ 67007520 (-)
G1575905 NA non-coding upstream 4590 67117173 ~ 67117386 (-)
G1575907 NA non-coding upstream 7038 67119621 ~ 67119917 (-)
G1575910 NA non-coding upstream 14399 67126982 ~ 67127425 (-)
G1575920 NA non-coding upstream 28722 67141305 ~ 67141693 (-)
G1575945 NA non-coding upstream 57639 67170222 ~ 67170436 (-)
G1575774 NA other downstream 281701 66826582 ~ 66826877 (-)
G1575541 NA other downstream 803402 66301415 ~ 66305176 (-)
G1575977 NA other upstream 90618 67203201 ~ 67203487 (-)
G1576222 NA other upstream 288865 67401448 ~ 67441976 (-)
G1576491 NA other upstream 802605 67915188 ~ 67955212 (-)
LOC118941211 NA other upstream 1509665 68622013 ~ 68626119 (-)
G1577745 NA other upstream 1636029 68748612 ~ 68787686 (-)

Expression


Co-expression Network