LOC110496729 (LOC106589066)


Basic Information

Item Value
gene id LOC110496729
gene name LOC106589066
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 67325870 ~ 67337196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953582.1
GGAAATCCGAGTTTCTCGTGAGGGCCCTTCGCTGATAAACTGCATCCCATAATTCACTGTCATTTTTCAAGCAGCCGGAGTGGAGCTTGCGACCTAATAAATTCCGTTGCATCGTCCCTGTTTTAGAAACGTATCGTGTATCAAATTGTAACGAACGGGCATGTAAGATATTAGTGTAACGATATCcctgattatatattttttctcgaATCGATGCGGATTTTGAAGGGGAAAAAAGTGCTCCAAAGTAGCGGAGGGACAAAAGGACATTCGAGCCTGATGATGAGAAAAGGGGGAGCCTCTGTCCCGGAGAAAGTCCTAATTTCAGGGGTCGGGGGCTCCTCCATGGACAAAAACCGCACAGCTCTGACCCAGTACGCCAATGCGCCGTATTATCAGATCTTAACCCCTCCGCCCTGTCCGAACCAGACTAACAATGTCGGTGTCCCAGACCCGACCGAGAGTCCGCTATACACTACCGGGGTGTCTACAAACGGGACCGGACAGCGACCACCCCTCGGAAAACACCAGACGAAGCGTCGGTTGGAGCTGGAGGAGAGTGATCAACAGTACACCAGTGAGACGAACAGTGGCTCCAGAGCTAAGCGAGCCACCAGGCTCTCCCTCAGAGGACCCAAGActcccccCTCCACGTTAGAGAAGACCAGGTATGACACATCTCTAGGCCTCCTGACCCAGAAGTTTGTCCAACTGCTGGCCCAGTCCAGTGATGGGGTGGTGGACCTCAACCGTGCCGCGGAGTCCCTCAAGGTGCCGAAGAGACGCCTCTATGACATCACCAACGTCCTGCAGGGGGTGCATCTCATCAAGAAGAAGTCTAAGAACAACATCCAATGGatgggctgTAGCCTGTCTCCACAGGGAGTTGCCAGGGTCCAGACCCCTGGCTCTGTGGGTGAAGAGCTACTGGAGTTGgcccaggaggagaagagactggaTGAACTCCTACACATCTCTACACGCATCGTCCAACAGATAACTGAAGACACACCCACAAGAAAGTTTGCATACATATCGTATGAGGATCTGAAGAGGATTCCTAGTCTCAAGGACCAGACGGTTATTGTGGTCAAAGCCCCTGCTGAAACCAGACTAGAGGTGCAAGACCCtgcagagAGTCTCCAGGTCCACCTGAGCAGTACCCAGGGTCCAATAGAAGTATTCCTTTGCTCTGATGACCACGCCCCCTCCTCCACGCTGAACAACTTGGCACTGAATGGAAAAGGACATCCCTCTTCATCGTATGTCAACGGAAACTCCTCTTTGTCCGTCTTCAAGGTGTCACAAGGGGGTAATAACTCCACCGATAGCGCCAGTATCAGTTTCTCCAACGCCCTGTCCAGGCTCCCAGCATGCTCAGCAGTGACAGTgacccctgtctccctcctccccctccaggaTGTCGACCAGGACCACGCcctttgtccccctctctccctccctcttctttgAGGAGGATGACTACATGCTCAGCCTGGGGGAAGACAACTTGTTCTCCTACGACCTGGACAAGCTTCCACTGGAAGACCTGCTCTGTAACTGAGTGAAATGGAAACTCGGCGGCCATTTTGTGTGTTTTGATTTTGGAGCCATGTTATTGGCCCAGATTTATGGCCCCAGTGTGGTCATTTACAGTATAATGAACTGATGTATAGCCCAGTGGTTTCAGCAGCCATTTTGGagcaatgctttttttttttttcttgactTCCTGGACTGGATCGCTCATAGAGGAATTGCTGTGTAATTGACCTTGAATGTGAAAATACCTGTTCTTGGTATAGATGTAAAGGAAGTAAGCCTACGTTGCCAACCCGGACAAATGTGGCAGGCCAGCACAAACACGAGCTGGCTAGAGTGGGAGAATTCTGTGGCTGAACGAACAGACAAACCCCTTCTCAAAGCCTGTCTTTCTGGTTAGACCCGCACTGACAGGCAAACCAACATTCTCTAAACAATCACTCACTCCCCATAGCAGACCGTTATGTCTTGTTGATGAACTGTTCTCGTCTGAAAACACAGATTGTCCCTAACAGAGATGGGTTAGGGATATCAACCCCCCTGGACACAGATTCTTACCCATATCTTCCACTGTGTGACTGTTATCTGTCAACCTGTGTTTAATAATGTGATGTAGTGGACCCTACCCGGCTAGGTCCTGGTTCTCGGGTTCACCAGAAGCGAGCAGACCTCATATCTAGGCCCCAGGATGGCGACGTCTGCCTGGGCGTCAATGGTACGTGAGTCCCTTGGTCTTCCACATGGAGCCCTCTGACCCAATACGGGGAAGAGACTCACTGGTATTGTTAGGAtaaccagggtatgtagtgagAGATGGCCCTAgggattgcatcccaaatggcaccctattccctacatagtgcactacttttttat
>XM_036953583.1
GGAAATCCGAGTTTCTCGTGAGGGCCCTTCGCTGATAAACTGCATCCCATAATTCACTGTCATTTTTCAAGCAGCCGGAGTGGAGCTTGCGACCTAATAAATTCCGTTGCATCGTCCCTGTTTTAGAAACGTATCGTGTATCAAATTGTAACGAACGGGCATGTAAGATATTAGTGTAACGATATCcctgattatatattttttctcgaATCGATGCGGATTTTGAAGGGGAAAAAAGTGCTCCAAAGTAGCGGAGGGACAAAAGGACATTCGAGCCTGATGATGAGAAAAGGGGGAGCCTCTGTCCCGGAGAAAGTCCTAATTTCAGGGGTCGGGGGCTCCTCCATGGACAAAAACCGCACAGCTCTGACCCAGTACGCCAATGCGCCGTATTATCAGATCTTAACCCCTCCGCCCTGTCCGAACCAGACTAACAATGTCGGTGTCCCAGACCCGACCGAGAGTCCGCTATACACTACCGGGGTGTCTACAAACGGGACCGGACAGCGACCACCCCTCGGAAAACACCAGACGAAGCGTCGGTTGGAGCTGGAGGAGAGTGATCAACAGTACACCAGTGAGACGAACAGTGGCTCCAGAGCTAAGCGAGCCACCAGGCTCTCCCTCAGAGGACCCAAGActcccccCTCCACGTTAGAGAAGACCAGGTATGACACATCTCTAGGCCTCCTGACCCAGAAGTTTGTCCAACTGCTGGCCCAGTCCAGTGATGGGGTGGTGGACCTCAACCGTGCCGCGGAGTCCCTCAAGGTGCCGAAGAGACGCCTCTATGACATCACCAACGTCCTGCAGGGGGTGCATCTCATCAAGAAGAAGTCTAAGAACAACATCCAATGGatgggctgTAGCCTGTCTCCACAGGGAGTTGCCAGGGTCCAGACCCCTGGCTCTGTGGGTGAAGAGCTACTGGAGTTGgcccaggaggagaagagactggaTGAACTCCTACACATCTCTACACGCATCGTCCAACAGATAACTGAAGACACACCCACAAGAAAGTTTGCATACATATCGTATGAGGATCTGAAGAGGATTCCTAGTCTCAAGGACCAGACGGTTATTGTGGTCAAAGCCCCTGCTGAAACCAGACTAGAGGTGCAAGACCCtgcagagAGTCTCCAGGTCCACCTGAGCAGTACCCAGGGTCCAATAGAAGTATTCCTTTGCTCTGATGACCACGCCCCCTCCTCCACGCTGAACAACTTGGCACTGAATGGAAAAGGACATCCCTCTTCATCGTATGTCAACGGAAACTCCTCTTTGTCCGTCTTCAAGGTGTCACAAGgaTGTCGACCAGGACCACGCcctttgtccccctctctccctccctcttctttgAGGAGGATGACTACATGCTCAGCCTGGGGGAAGACAACTTGTTCTCCTACGACCTGGACAAGCTTCCACTGGAAGACCTGCTCTGTAACTGAGTGAAATGGAAACTCGGCGGCCATTTTGTGTGTTTTGATTTTGGAGCCATGTTATTGGCCCAGATTTATGGCCCCAGTGTGGTCATTTACAGTATAATGAACTGATGTATAGCCCAGTGGTTTCAGCAGCCATTTTGGagcaatgctttttttttttttcttgactTCCTGGACTGGATCGCTCATAGAGGAATTGCTGTGTAATTGACCTTGAATGTGAAAATACCTGTTCTTGGTATAGATGTAAAGGAAGTAAGCCTACGTTGCCAACCCGGACAAATGTGGCAGGCCAGCACAAACACGAGCTGGCTAGAGTGGGAGAATTCTGTGGCTGAACGAACAGACAAACCCCTTCTCAAAGCCTGTCTTTCTGGTTAGACCCGCACTGACAGGCAAACCAACATTCTCTAAACAATCACTCACTCCCCATAGCAGACCGTTATGTCTTGTTGATGAACTGTTCTCGTCTGAAAACACAGATTGTCCCTAACAGAGATGGGTTAGGGATATCAACCCCCCTGGACACAGATTCTTACCCATATCTTCCACTGTGTGACTGTTATCTGTCAACCTGTGTTTAATAATGTGATGTAGTGGACCCTACCCGGCTAGGTCCTGGTTCTCGGGTTCACCAGAAGCGAGCAGACCTCATATCTAGGCCCCAGGATGGCGACGTCTGCCTGGGCGTCAATGGTACGTGAGTCCCTTGGTCTTCCACATGGAGCCCTCTGACCCAATACGGGGAAGAGACTCACTGGTATTGTTAGGAtaaccagggtatgtagtgagAGATGGCCCTAgggattgcatcccaaatggcaccctattccctacatagtgcactacttttttat

Function

NR:

description
PREDICTED: transcription factor E2F3-like isoform X2

GO: NA

KEGG:

id description
K06620 E2F3; transcription factor E2F3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953582.1 False 2418 mRNA 0.51 7 67325870 67337196
XM_036953583.1 True 2308 mRNA 0.50 7 67325870 67337196

Neighbor

gene id symbol gene type direction distance location
sox4a LOC106589061 coding downstream 213287 67105914 ~ 67112583 (-)
LOC118941008 NA coding downstream 267321 67058124 ~ 67058673 (-)
LOC118941007 NA coding downstream 454944 66857937 ~ 66870926 (-)
LOC110496725 LOC106589055 coding downstream 515378 66802870 ~ 66810492 (-)
LOC110496895 NA coding downstream 536876 66787048 ~ 66788994 (-)
srfbp1 LOC106589067 coding upstream 4192 67341388 ~ 67348984 (-)
fndc5b LOC106589070 coding upstream 70116 67407312 ~ 67441367 (-)
LOC118941009 NA coding upstream 206365 67543561 ~ 67558111 (-)
eif3i eif3i coding upstream 324929 67662125 ~ 67668116 (-)
txlna LOC106589073 coding upstream 332892 67670088 ~ 67684423 (-)
G1576234 NA non-coding downstream 3677 67321788 ~ 67322193 (-)
G1576226 NA non-coding downstream 12741 67312193 ~ 67313129 (-)
G1575990 NA non-coding downstream 112621 67213003 ~ 67213249 (-)
G1575972 NA non-coding downstream 128048 67197362 ~ 67197822 (-)
G1575955 NA non-coding downstream 142526 67182905 ~ 67183344 (-)
G1576247 NA non-coding upstream 13951 67351147 ~ 67351778 (-)
G1576260 NA non-coding upstream 46947 67384143 ~ 67386610 (-)
G1576222 NA non-coding upstream 64252 67401448 ~ 67441976 (-)
G1576266 NA non-coding upstream 74253 67411449 ~ 67412631 (-)
G1576288 NA non-coding upstream 138263 67475459 ~ 67476466 (-)
G1575977 NA other downstream 122383 67203201 ~ 67203487 (-)
G1575774 NA other downstream 498993 66826582 ~ 66826877 (-)
G1576491 NA other upstream 577992 67915188 ~ 67955212 (-)
LOC118941211 NA other upstream 1285052 68622013 ~ 68626119 (-)
G1577745 NA other upstream 1411416 68748612 ~ 68787686 (-)
G1577996 LOC106589133 other upstream 1975690 69312886 ~ 69315998 (-)

Expression


Co-expression Network