srfbp1 (LOC106589067)


Basic Information

Item Value
gene id srfbp1
gene name LOC106589067
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 67341388 ~ 67348984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572767.2
AATAAAAACACTGTATCGTGGGCCCTCCCTCTTTCCGTCAAACGCCACGACGCACGCCAACGTGACTACGTCATTGATACGTCTACGTAGAAAAAACATGGCTGCCTCTTGTATGGACTAACTCTTTCTCGAATTTATACTTTGACGATGTCATCAACCGACACACAGCAAGTGACAATGCCCGACGTTCTGAAGACGGAGGCGATCCCTGAGGATCCAAATAAACAGAAAATGTCCGAACTCCCAAAAAATGACAATAAGCCTGTGCTTCTGATAAAAGACAAGAAAACAGGGGctcaaaagaagaagaagaagaagccagAGATTCcgagaaggaagaagaagaaaccaGATGATCCCGGTAAGCCAGTTCCATTAAACCTGAACGACGAGGTGGTGAGGATGAGGAAGGAGGTCAAAAGGGTGAGGGCGCTGGTCATCAGGAAGTTGACTAGGCAGATGGCAGGTCTGAAGAAAAAGAAGGGGAAGGAGGAAGATCTGGAGAGGAACCGGAGGAGGGTAGGCAGACTGCTGGAAGAAATCCATGCGATGAAGACACTCAAACCTGATCCGGTGACCAAGGCTGCCCTTCAGAAGAACCTGAGTTTTGAGTTTGTCTGTAAGAACCCAAAGGCCACCATTTCTGACCGAGCTATAGCCCGTATCGCCACTCACCCCCAGTTCAGCAAGAAGATAGACACCATCAAAGCTGCCATTAAAGCCTTCAAGGATGAGAGGATgtcagtagagagaggagacaagaaggAAACGGTTAGAAAGCAGCCTTTAAAAGTGGTCGAGGTGATCGAGCAGCCGAGGGacagtgatggaggaggaggggtggaaggtgaagagggagatgaagagatggatgaggaggaagatggaACACCCGCTGATGATGAGGAAGATGGAACACCCGCGGAGAGTCTAACGGTTGACGAACCAGCTGTTATAGAAAAGCAACCTGTTGATAAGACTGTCAGGGTTACTGAAGAAGATGACGTTTCCACGATAGAGAATAAAGAATCGGCCATAGAGAATACAGTAGCGGACCCTCAGCCCACGGAGATGTCAGAGGCCGATAAGACTCTGATGGACTCATCCACTCCATTCACAATAGAGGCCCCACAAGTAGTACCTACAAAGAACATAGTAACCATGAAAAACACACCACAGAAGCAGGTAGTCCAGAAACTCACAAAGGACACTCCAGCCACTCAGAAGACTCAAGACCCCAAACCCCAGAAAGTCACTAAACCTCAAAATAAAGATGTTAAAAACAAGCAGGATGATGAAGAGgattctgatgatgatgatgatgaggaagaggagagcgaCTTGGAGTCTTCGGACGACGAGAAGGAGTATTTTGACGACAGCACGGAGGAGCGTTTCCGTAAGCAGTCCTCCCAGTCGGATGAAAGCGACAACGATGATTTCTTCCTGGGGAAAGTCAACAAGTTCAAAAAGAAGAGTGATACGACTACAGCGCCaccaggtggaggggaggggaagagcagCGAACTGGGGAAAAACCCACTGCTGGAACCACTGGAGAGCTTAAACCCACACCAGACTGAACTGGATGAGCTAGAGGACAGACTGAACTCCAAGGGGAAGTCTATCTTCTGCTCCAGTCTGTCTGGGTCCAGAGGTGGTAGAGGCAGGGGTAGAGGCGTAGGCAGGGGTAGAGGTGCAGGCAGGGGTATGGGCCGAGGAGGGGGTAGGGGAGGGGACTTCAAGAACCGTGGAAGAGGGGGATATGATGGCTCGTCTCGGGGTCCTGGGTCACATGATGGGGGTTctgggaggggaaggggagactTTGGGAGGCAACGGGAAGGCAGAGGGTTCTCCTCCACCCCTTCATCTCAGCCACCACAACAGGCCCTGCACCCGTCATGGGAGGCCAGTAAGAAGAGGAAGGAGCAGCAGACCGTAGTAGTGGCCTTCCAGGGAAAGAagatcaaatttgatgattgaGCTAAGGccggcgatatggccaaaatgtATCACAATATTTTTGATGGTATTTgacagtattttatgtttttacATAATAAAAGTTATCAATTTTG

Function

NR:

description
serum response factor-binding protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572767.2 True 2081 mRNA 0.50 3 67341388 67348984

Neighbor

gene id symbol gene type direction distance location
LOC110496729 LOC106589066 coding downstream 4192 67325870 ~ 67337196 (-)
sox4a LOC106589061 coding downstream 228805 67105914 ~ 67112583 (-)
LOC118941008 NA coding downstream 282839 67058124 ~ 67058673 (-)
LOC118941007 NA coding downstream 470462 66857937 ~ 66870926 (-)
LOC110496725 LOC106589055 coding downstream 530896 66802870 ~ 66810492 (-)
fndc5b LOC106589070 coding upstream 58328 67407312 ~ 67441367 (-)
LOC118941009 NA coding upstream 194577 67543561 ~ 67558111 (-)
eif3i eif3i coding upstream 313141 67662125 ~ 67668116 (-)
txlna LOC106589073 coding upstream 321104 67670088 ~ 67684423 (-)
LOC118941210 NA coding upstream 350192 67699176 ~ 67702000 (-)
G1576234 NA non-coding downstream 19195 67321788 ~ 67322193 (-)
G1576226 NA non-coding downstream 28259 67312193 ~ 67313129 (-)
G1575990 NA non-coding downstream 128139 67213003 ~ 67213249 (-)
G1575972 NA non-coding downstream 143566 67197362 ~ 67197822 (-)
G1575955 NA non-coding downstream 158044 67182905 ~ 67183344 (-)
G1576247 NA non-coding upstream 2163 67351147 ~ 67351778 (-)
G1576260 NA non-coding upstream 35159 67384143 ~ 67386610 (-)
G1576222 NA non-coding upstream 52464 67401448 ~ 67441976 (-)
G1576266 NA non-coding upstream 62465 67411449 ~ 67412631 (-)
G1576288 NA non-coding upstream 126475 67475459 ~ 67476466 (-)
G1575977 NA other downstream 137901 67203201 ~ 67203487 (-)
G1575774 NA other downstream 514511 66826582 ~ 66826877 (-)
G1576491 NA other upstream 566204 67915188 ~ 67955212 (-)
LOC118941211 NA other upstream 1273264 68622013 ~ 68626119 (-)
G1577745 NA other upstream 1399628 68748612 ~ 68787686 (-)
G1577996 LOC106589133 other upstream 1963902 69312886 ~ 69315998 (-)

Expression


Co-expression Network