txlna (LOC106589073)


Basic Information

Item Value
gene id txlna
gene name LOC106589073
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 67670088 ~ 67684423 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953589.1
TAAATTACCTAAAGCTTATCCCAACGAATTAATAATGACTGTGCCATATGAGGCATTTCATCATGAAGAAACAGGACACGGAAGAGTCGGCCACGCAGGGCAGTGACGCGGCTCCACCACCTGGcactggagagatggagggaagcaCAGCGGCAAAAGACGTTACAGAGACCAGTAGCCCAAAAGACGTTATAGATACTGTCAGCCCTAAAGAGCCAGACAGGCCTTCACAGATTGATGGGGCTGAAAGTTCAGTGGGTGAGGTGTCTGCCGTTCCCAACACAGCAGAGTCTGCAGCTCTCCCCGCGGTCCCACCTGTAGAAGAGCCTGCTTTCGTCCCAGTCTCTACTATAGCAGACCCCATCCCAGTCTCTACTATAGCAGACCCCGTACCCGTCTCTACTGCAGCGGAGGGGGTGTCGTCTCAGTGTGACATGGCTGAGGAGCTGAGCCGCCAGCTGGAGGACATCCTCAACACCTACTGTCTGGAGGACAACGGGGAAGACGGGGTTAACCTGCCCAACGGCCAATCACACGGCCCTGTGCTCAACGGCCTGGCCAATGAGAAGGAGCTGGACGTGAAGCCAGGGGATGTCAAAGTGAACGCCTGCGGAGCGGAGAAGGCAAAGACTCAGGACAAGAAGAAGGTGAAGGGTCTGGGTAAAGAGATCACCCTGCTGATGCAGACCCTGAATACTCTGAGTACACCAGAAGAGAAACTGGCAGGCCTCTGTAAGAAGTATGCTGATCTGctGGAGGAACAGCGGAACAGTCAGAAGCAAATGCGGGTCCTCCAGAAGAAACAGTCTCAGCTGGTGCAGGAGACAGACCACCTAAAGAAGGAACACAGCAAGGCTATCCTGGCACGCAGCAAACTGGAGTCACTCTGTAGGGAGCTGCAGAGACACAACCGCACACTCAAGGAGGACGGGACACAGCGTGCAcgcgtggaggaggagaagaggaaggtggTGACATCACACTTCCAGgtGACTCTGAATGACATCCAGGCCCAGATGGAGCAGCATAACGAGAGGAATGCCAGTCTGAGGCTGGAGAACTCTGAGCTAGCAGAGAAGCTCAAGAAACTCATCCAACAGTACGAACTACGAGAGGAGcacattgacaaggtgttcAAGCATAAGGATCTGCAGCAACAGTTGGTGGATGCGAAGCTACAACAGGCTCAGGAACTGCTCCTGGAGTCTGAGGACCGACATCACAGAGAGAAGGACTTTctGTTGAAGGAAGCGGTCGAGTCTCAGAGGATGTGTGAGCTGATGAAGCAGCAGGAAGTCCATCTCAAACAACAGCTGTCCTTATACACAGAGAAGTTTGAGGAGTTCCAGACTACTCTGTCCAAGAGCAATGAGGTGTTCACCACTTTCAAACAAGAGATGGAGAAGaTGACGAAGAAGATCAAGAAGCTGGAGAAGGAGACGACCATGTATCGTTCCAGGTGGGAGAGCAGCAACAAGGCCCTGCTGAACATGGCTGAGGAGAAAACTCTGCAGGACCGTGAGTTTGACAGCCTCCAGGGGAAGGTAGGGAAGTTGGAAAAGCTTTGCCGGGCGCTGCAGAACGAACGCAACGAACTCAGCAAGAAGGTTCAGGGCCTGAGCACCGGCCCCGGGGACAACAGCCCAGGGGCTGAATCCCCTTCCCTACCCCCCACAGACTCCCAGGAGCCTAGCCCAGACCCCGACACCACCACCCCTAGCTCCCCAATACCCTGCTCGCATGGCTGCCACTGCGGCCCAGAGTTGGACACTGAGAACCAGGCCTGTGCAGCCACCCTCACTGCCCAGGAATGAGACCTCTTGCCTGGGCAACACCGCTCAGTCTCCCCTTCACCGACCGATTACCAACTACCAGCCTGCAAGCCAAGCCACTATTAATGTGGGAGTTAAGAGTGTGGGTCTGTATGATTTTCCCCCAGAGTTAGATAAAGTTGtcccctaaccacagatctaggatcagattccctTAGGTCCAACTTAAAACCAATAGAGCGGTGCAAGAACATCTGACCCTGGATCTGTAGTCAGTTAGCAGCTTCTACCTACTCTGGTGGCTCCTGGAGAGTtgaaggtgatgatgatgatggtgtcaGTCAGGGACGATTATTGGAGGTTCTTCATcctgtgtgttttgttttttggTCTTTTTCTTTTTACATTTTCCTTTTGAGAACTCTAGCACACAAATGTTCATGGAAATCACAGCTTTTATGTGAGGCAAAGCAAGCTTTAAAAAAAgaggcttcatcccaaatggcaccctattccctatgtagtgcactactttagaccagagccctatggaaccctatttcctacatagtgcactactttagaccagagccctatggaaccctattccctatgtagtgcactactttagaccagagccctatggaaccctattccctatatagtgcactactttagaccagagccctatggaaccctattccctatatagtgcactacttttcaccagagctcTGTTGGAATAGTGTGGTATTTGGGACACTGGCTGCTTAGGAAGGTAAATCTACAGTAAAGATGTTGGAACAGGAGGGTTTttcgtgtgtgtgcttgtctccaTCAGTCCCTCTTtttcgtgtgtgtgcgcgtgtctgtcAGTCATAGAGGTTAAGATATAGTGAATCTGCAAATGTACGGCCACAGTTAAACTTGAATTCTAggatttatatttttttaagttgAACACACTGAAAGCATGGCTAACTCATCAGCGCATGTAGGAATCACCTGACCTTTCCTTCGGCACAGAGAGCAGAGTGTATAATATCTAGGTTGGGGATAATCTTGCAAAAGGGTCACTTTCGTTCCATTTTAGACGTCCTTGTTTAGGTCCAGAGCATCAAAACACTTAAAGGGATGGTGTAGATATTCTTTATGAATCTTACAGTATCGTTGGATCCACACAAAATGCTCTTAGACCACGAGGAACCAACCCGGAagcaaatggggggggggggggggtgaaatgaGGAGGGACCTGAGCTGAATTTGTCCAACAAGAAAAATTGTTTTCATTGCTTAATGTTTTCCGCTGCAATAATGTTTTGTTACGGTTTGTACTAATGAATACACCCGGAAGATTAGACAAAATTGCCTTGTTCTTTTCGTTTTGGTTTTGGGTTGCTTCTTTTATAGCGGTGTTGGGTTTTTTAATTCCGTTCAATTGTCCTCAATAGTTTTCAATTGGAATTGACCTCGACTCTGCTTAATATCATGCTGTACTCTGGACCTCCTTTATGTTGCAAAGACTGCACAGCAGAGTTTATACATTGTGTTTGTTTGATATGCaactgtttaaaaaataaatatatatatc
>XM_036953590.1
GTAGTTCTGAGTAGGGCGTTTGAACGACATATTCCACTTACCCGCAATTGTTACCTACGCACTTCCGTTGTGTCTTGTGTATTTCCTGTCACGGTTGGTAGGAGGAAAAGCAGCAGGCAACAGAGACGTGTATTTATAGAGTTGGAAGAAGGCATTTCATCATGAAGAAACAGGACACGGAAGAGTCGGCCACGCAGGGCAGTGACGCGGCTCCACCACCTGGcactggagagatggagggaagcaCAGCGGCAAAAGACGTTACAGAGACCAGTAGCCCAAAAGACGTTATAGATACTGTCAGCCCTAAAGAGCCAGACAGGCCTTCACAGATTGATGGGGCTGAAAGTTCAGTGGGTGAGGTGTCTGCCGTTCCCAACACAGCAGAGTCTGCAGCTCTCCCCGCGGTCCCACCTGTAGAAGAGCCTGCTTTCGTCCCAGTCTCTACTATAGCAGACCCCATCCCAGTCTCTACTATAGCAGACCCCGTACCCGTCTCTACTGCAGCGGAGGGGGTGTCGTCTCAGTGTGACATGGCTGAGGAGCTGAGCCGCCAGCTGGAGGACATCCTCAACACCTACTGTCTGGAGGACAACGGGGAAGACGGGGTTAACCTGCCCAACGGCCAATCACACGGCCCTGTGCTCAACGGCCTGGCCAATGAGAAGGAGCTGGACGTGAAGCCAGGGGATGTCAAAGTGAACGCCTGCGGAGCGGAGAAGGCAAAGACTCAGGACAAGAAGAAGGTGAAGGGTCTGGGTAAAGAGATCACCCTGCTGATGCAGACCCTGAATACTCTGAGTACACCAGAAGAGAAACTGGCAGGCCTCTGTAAGAAGTATGCTGATCTGctGGAGGAACAGCGGAACAGTCAGAAGCAAATGCGGGTCCTCCAGAAGAAACAGTCTCAGCTGGTGCAGGAGACAGACCACCTAAAGAAGGAACACAGCAAGGCTATCCTGGCACGCAGCAAACTGGAGTCACTCTGTAGGGAGCTGCAGAGACACAACCGCACACTCAAGGAGGACGGGACACAGCGTGCAcgcgtggaggaggagaagaggaaggtggTGACATCACACTTCCAGgtGACTCTGAATGACATCCAGGCCCAGATGGAGCAGCATAACGAGAGGAATGCCAGTCTGAGGCTGGAGAACTCTGAGCTAGCAGAGAAGCTCAAGAAACTCATCCAACAGTACGAACTACGAGAGGAGcacattgacaaggtgttcAAGCATAAGGATCTGCAGCAACAGTTGGTGGATGCGAAGCTACAACAGGCTCAGGAACTGCTCCTGGAGTCTGAGGACCGACATCACAGAGAGAAGGACTTTctGTTGAAGGAAGCGGTCGAGTCTCAGAGGATGTGTGAGCTGATGAAGCAGCAGGAAGTCCATCTCAAACAACAGCTGTCCTTATACACAGAGAAGTTTGAGGAGTTCCAGACTACTCTGTCCAAGAGCAATGAGGTGTTCACCACTTTCAAACAAGAGATGGAGAAGaTGACGAAGAAGATCAAGAAGCTGGAGAAGGAGACGACCATGTATCGTTCCAGGTGGGAGAGCAGCAACAAGGCCCTGCTGAACATGGCTGAGGAGAAAACTCTGCAGGACCGTGAGTTTGACAGCCTCCAGGGGAAGGTAGGGAAGTTGGAAAAGCTTTGCCGGGCGCTGCAGAACGAACGCAACGAACTCAGCAAGAAGGTTCAGGGCCTGAGCACCGGCCCCGGGGACAACAGCCCAGGGGCTGAATCCCCTTCCCTACCCCCCACAGACTCCCAGGAGCCTAGCCCAGACCCCGACACCACCACCCCTAGCTCCCCAATACCCTGCTCGCATGGCTGCCACTGCGGCCCAGAGTTGGACACTGAGAACCAGGCCTGTGCAGCCACCCTCACTGCCCAGGAATGAGACCTCTTGCCTGGGCAACACCGCTCAGTCTCCCCTTCACCGACCGATTACCAACTACCAGCCTGCAAGCCAAGCCACTATTAATGTGGGAGTTAAGAGTGTGGGTCTGTATGATTTTCCCCCAGAGTTAGATAAAGTTGtcccctaaccacagatctaggatcagattccctTAGGTCCAACTTAAAACCAATAGAGCGGTGCAAGAACATCTGACCCTGGATCTGTAGTCAGTTAGCAGCTTCTACCTACTCTGGTGGCTCCTGGAGAGTtgaaggtgatgatgatgatggtgtcaGTCAGGGACGATTATTGGAGGTTCTTCATcctgtgtgttttgttttttggTCTTTTTCTTTTTACATTTTCCTTTTGAGAACTCTAGCACACAAATGTTCATGGAAATCACAGCTTTTATGTGAGGCAAAGCAAGCTTTAAAAAAAgaggcttcatcccaaatggcaccctattccctatgtagtgcactactttagaccagagccctatggaaccctatttcctacatagtgcactactttagaccagagccctatggaaccctattccctatgtagtgcactactttagaccagagccctatggaaccctattccctatatagtgcactactttagaccagagccctatggaaccctattccctatatagtgcactacttttcaccagagctcTGTTGGAATAGTGTGGTATTTGGGACACTGGCTGCTTAGGAAGGTAAATCTACAGTAAAGATGTTGGAACAGGAGGGTTTttcgtgtgtgtgcttgtctccaTCAGTCCCTCTTtttcgtgtgtgtgcgcgtgtctgtcAGTCATAGAGGTTAAGATATAGTGAATCTGCAAATGTACGGCCACAGTTAAACTTGAATTCTAggatttatatttttttaagttgAACACACTGAAAGCATGGCTAACTCATCAGCGCATGTAGGAATCACCTGACCTTTCCTTCGGCACAGAGAGCAGAGTGTATAATATCTAGGTTGGGGATAATCTTGCAAAAGGGTCACTTTCGTTCCATTTTAGACGTCCTTGTTTAGGTCCAGAGCATCAAAACACTTAAAGGGATGGTGTAGATATTCTTTATGAATCTTACAGTATCGTTGGATCCACACAAAATGCTCTTAGACCACGAGGAACCAACCCGGAagcaaatggggggggggggggggtgaaatgaGGAGGGACCTGAGCTGAATTTGTCCAACAAGAAAAATTGTTTTCATTGCTTAATGTTTTCCGCTGCAATAATGTTTTGTTACGGTTTGTACTAATGAATACACCCGGAAGATTAGACAAAATTGCCTTGTTCTTTTCGTTTTGGTTTTGGGTTGCTTCTTTTATAGCGGTGTTGGGTTTTTTAATTCCGTTCAATTGTCCTCAATAGTTTTCAATTGGAATTGACCTCGACTCTGCTTAATATCATGCTGTACTCTGGACCTCCTTTATGTTGCAAAGACTGCACAGCAGAGTTTATACATTGTGTTTGTTTGATATGCaactgtttaaaaaataaatatatatatc

Function

NR:

description
PREDICTED: alpha-taxilin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953589.1 False 3366 mRNA 0.49 12 67670088 67684247
XM_036953590.1 True 3465 mRNA 0.49 12 67670088 67684423

Neighbor

gene id symbol gene type direction distance location
eif3i eif3i coding downstream 1972 67662125 ~ 67668116 (-)
LOC118941009 NA coding downstream 111977 67543561 ~ 67558111 (-)
fndc5b LOC106589070 coding downstream 228721 67407312 ~ 67441367 (-)
srfbp1 LOC106589067 coding downstream 321104 67341388 ~ 67348984 (-)
LOC110496729 LOC106589066 coding downstream 332892 67325870 ~ 67337196 (-)
LOC118941210 NA coding upstream 14753 67699176 ~ 67702000 (-)
kpna6 LOC106589075 coding upstream 18118 67702388 ~ 67729353 (-)
trnay-gua-8 NA coding upstream 124083 67808506 ~ 67808593 (-)
trnay-gua-9 NA coding upstream 125556 67809979 ~ 67810066 (-)
trnay-gua-10 NA coding upstream 127029 67811452 ~ 67811539 (-)
G1576309 NA non-coding downstream 42482 67531804 ~ 67627606 (-)
G1576324 NA non-coding downstream 106367 67562905 ~ 67563721 (-)
G1576308 NA non-coding downstream 139167 67530532 ~ 67530921 (-)
G1576301 NA non-coding downstream 156258 67513615 ~ 67513830 (-)
G1576300 NA non-coding downstream 158683 67511189 ~ 67511405 (-)
G1576359 NA non-coding upstream 5616 67690039 ~ 67699105 (-)
G1576367 NA non-coding upstream 20832 67705255 ~ 67705540 (-)
G1576374 NA non-coding upstream 48224 67732647 ~ 67732872 (-)
G1576222 NA other downstream 228112 67401448 ~ 67441976 (-)
G1575977 NA other downstream 466601 67203201 ~ 67203487 (-)
LOC118941008 NA other downstream 611415 67058124 ~ 67058673 (-)
LOC118941007 NA other downstream 799889 66857937 ~ 66870926 (-)
G1575774 NA other downstream 843211 66826582 ~ 66826877 (-)
G1576491 NA other upstream 230765 67915188 ~ 67955212 (-)
LOC118941211 NA other upstream 937825 68622013 ~ 68626119 (-)
G1577745 NA other upstream 1064189 68748612 ~ 68787686 (-)
G1577996 LOC106589133 other upstream 1628463 69312886 ~ 69315998 (-)
G1578111 NA other upstream 1882761 69567184 ~ 69568164 (-)

Expression


Co-expression Network