XLOC_034341


Basic Information

Item Value
gene id XLOC_034341
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 1112303 ~ 1136586 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068646
GGCAGTTTCCGGATGATCTGAACGCACTCCTGCAGGACGCGGCTGACAGAAAGTGGCCGTTTGTGGAGGAGAAATGGCAGTACAAGCAGTCGGTGTCGTCTGAAGACAAGATCAACTCATCAGAGCTCATCAGGGCTCATCTGCAGGACTTACTGCTCTTCCTCAGAGACTGTATCGCGGCCGATGATCCCGGTTTGGCCGCCGCTGTGCTGTTTCTGCTGGACCGTCTGCTGTACTGGATGGATGGCTCAGAGGGCCTGCTTAAGGTTGCTAAAGCGTTGCACAAACGTTATCCAGACGTTCCCATTGCTCCTCAGGTCATCATCCGGCAGGCTCGGGTTTACCTGAACACCGGTAAACTGAGGAAGGCAGAGTTCATTCTCAGCAGTCTGATCAAAAATAATGCGTCCACAGGTACTGTTCCCTTTCATTGCTTTACATGCGAATATAGCTCAATGCCGTGTCTGTGCTGTGACTGTAATGCTGTTCTGCAGGCTGCTGGTCGTATCAGAAGGCCAGTGATCAGACTCTGGTGCAGGCCGTCTGCCTGCAGGTGCGTGGACAGGTGCTGCAGACGCTGGGTTTGTGGCTGGAATCTGCAGAGCTCTTATGGGCGTCTGTCATCGGCTTTTACACTCTTCCACAGCCTGATAAAAAGggCATTGGAACGTCTCTCGGGCTTCTGGCTAACATACTGACCTCCATGAATGAGCGAGACTTCACGGCGCTCCAGAATAAACCACATATTAAACTGAGTTTTCTCGGAGAGACTCGCCATCGTCTGCTTTCTGCGGCACAGGCGGCCAAAATGGCGGTTGTCTTAAGTCAATATGGATCTCTGTATGTTCTGACCAATGTGGTGGCACGGGGGATTTGTTTACTGTCTTACAGTTTCTCTAGAAAATGTCCAACTAGCGATCAGCATAAGTATATGGCTTTGGCTAAAGAGGCCTTTGAGATCGGTTTGTTGACCAAGACTGCAGCAGACGCGGTCACCAGTAAACTGGAGCTGCACACGTTCCTCAAAGCTGCATACAGTTTAACTGCAACTCACCGATGGATGAGCGGACCATCAGACAACGTCATCACTGCAACGGGCGTCTGTAGACAGGCTTTGACTTTATTTGTCCACTACTGCAATACAAGCGATTCCTCTTTGTGTGCTGTGATAATGGAGAAAATACAACAGATTAAGACGTTGTTGAACGTGAACCCTTTTCATAATTCAGATCCACACTCCTTTATTCCAGACAGCTACCGTTCCATGCAGATCAAGCCTGTTTTGTTTACACCAGATGATTTTGAGAAGACGTTGGACGTTTTTGAAAAGCACCACAAGACTGTTTGCGAGGCATTAACAAATGATACTCGAGTTACATCCTCGACTCATGCACAGTGTATAACTGcatttcagacaaacacagaggtTCTGACTACAGAGGTTTCCACATGCCGTCATTCTCATGCAGATTCCATCAAGCAGACTCGATCTAATAGCAAAAAGGTTGGTCAAAactctcacaacacatgcagttCTGGCTCTTATGAGCCTCTTGATGACTGTAGTGATGGAGGTCGAGCAGCAAACATTGTCGATCCAAGGAATCAAAGTAATACTTCCAATGCCTTTAGATACAACAAAGGTAACCAAAGTCAGCCCCAACCCATGCACTCGGAAGCCGGAACATCAGAAAGCCGAAGAAGAAACTATTGGAAGTATCAGGGAGCAAGAACATCTTCAAGTTCTTACAGCAATTCCTCTTCATGGGAAATTGTATCAGGACGATCTCAAAGCAGCATAGAAACTGAGGAGGATGCAGGTGATCCTTTACATAACATCAATAGGGATACACAATTTGATGAACCCAACAGTGTTAGACCCAACAAGGGGATCCAAAATCAATCCCAACCAATGCAAGAGCCAGCCACAGCTGAAGACATTGAAGATGAGACCCAGAATACGTCAAGAACCCAACGAATAGATGTTCCAAAGAAACTGGAAGTAAGAACACTTTCCAGTTCCTTTGGGAGCCGCACTTCATGGGAGCATCTATCAGGACAATCTCAAAGCAGCATAGAAACAGAGGACGACATTGTAGATCCCTCACTAAATGCCAACAAAGTTGATGCCGATGCAGAGAGTGGTGTTTCTAACATCCTTAGACACAACAAAGGGATTCAAAGTCAATTCCAGCCAATTAATGAACCTGCCACAACTGAAGATGTTGAAGACGAGACACCAAATACATCTTCTACTCAACCGAGAGGTGGCTACATTAGACACAACAAACGGATCCAAAGACAGTCCCAAACAATGAAAGAGCCCATCCTAACAGAAGAAGTAGAAGATGAACCATCGAATACATCATCCACCCATCAGAATGATACCAAGAACCTGGGAGCAAGAGTGTCTTTAAGTTCTTGCAGCAGTAGCTCTTCATGGAATTGTGTATTGGGACAATCTCAAAGTAGCATAGAAACTGAGGAGGACGCAATAGATCCATCACAGAACATCAACAAAATCAATCCCAGTGCAGAGGGTGGTGGCTCCAACAGCCTTAGACACAACAAAGGCATCCAAAGTCAATCTCAACCAATGAAAGGGCCAATATTAACTGAAGATGAACAACCACATACATCAGATAATGCGGATTCTTcacaaaatgtcagcaaaatcaatGCTAAATCGATTGGTGACTCCAATGCCATTAGACTCAACAAAGGGATCCAAAGTCTGCCTATAGCTGATGATATGTCAAGAACCCAATGTATAGATGTTCGCAAGAAACGGGAACCAAGATCATTTTCCAGTTCTGTCGGGAGCCGCTCGTCATGGGAGCATCTTTCAGGACAATCCCAAAGCAGCATAGAAACAGAGGACGACATCGCAGATCCCTCAGAAAATGTCAACATAACCAACCCCAGTGCAAAAACTGGTGACTCCAACACTGTTAGACACAACAAAGCAGCCCAAAGTCCATCCCAGCCAATGAATGAACCCATCTTTACTGAGGATATTGAGGATGAACTACCAAATACATCAGACCCTACATTAAACATCAACAAAATCAATCCCAGTGGAAAGATTGGTGATTCCAACACGATTAGACACAACAAAAGGATCCGAATTCAATCCCAACCAATGAAAGAGCACATTTTAACAGAGGATGTTGAAGATGAGACACCAAATACATCAACTgcacaacagaaagacattaggAATAACCTGGGACCAAGAACATCTTCAAGTTCCTTCAGCAGTCACTTTTCTTGGGAATGTGTAAAGGGACAGTCTCAAAGTAGCATAGAAACTGAGGACGATGCTATAGGAATCAATCCTAACCACAGTGAGATGAATAATGATGCAAATCTTGGTAGAAGCCCTTCGTTTTCCCTGTGCAACAGCTCTGAATTGCAAGCATCTTTTCAAAAACTGCCCAAAAGCCCCATTGCTGATGCTGAATGTCTAGAGTTGATGCGTAAAAAGGAAAGAAGGGAGGAGAGTGATAAAGCATTTCCACTTAAGGTCTCGGACAATATTCGTAAATCTCAGAATACCACAAGTGACTCATTTGAGGAGCTGGGATTTGAAGATCTGTCTTTACTCAACAACCATCAGAAAACGAGGAGCTCCATCAAACCTTCCTCTACCGGAGGGGATGCACCGCCATGCACCAGCTGTTTTGAGAACTGCATCATGGGAAGTGAAGTTCTGACCGAGCTGGACTACAGATCTCTGTTGGCTGGAGTTTGCCACCGATGCCTTGTAGAGCGGCTGCCAAATAAACCGCTGAAGCCCCTGGAGAAAGGACAGCAGCAGAAGGCCTACGACGCTGTTGTCCTGAAGTACTCGAAGGCCTCAGACGAGTGGATGGGCTGCGAGACCAGTGTTTATATTGGGGAGCCGATGGGAGCCCAGGGCCAGCAGAGGAGAGCCATACAACTGCAATACCTGCACCAGGAGCAGCTGCTCAGCAGCTATGTAGGGAAGGAGTATCTGAAGGAGAAAGGGCTCCATGCTCATCTTGATGACGTGGAGAGACAGATGACGGCTCAATACTATGTAAATGAGTTCAATAAATGCCTGTATGATAATAACGTCACCACCCAGATCTTCTTCATCCCCTCCGAAGTGCTGCTGGTTATGGAGAATAAACGTATCGTGACGTGTTTATCCGCGGAGCCGTACATGTCTGGGACATTTGTCAAGCTCACCAACAAcactaataaaacacaaatgaagtaTGATGCAACGAAGTATGGCATTGCGTTTGGTCACTTCACCTATGAGTTCTCCAATCATCAGGAGGTGGTGGTGGATCTACAAGGGTGGATCACGGCCAACGGCAAGGGCTTGACGTACCTGACGGACCCACAGATTCACTCGCTGATCCGCCTGAAGTCCAGCCGCTCTCAGCAGACGGGCATCAATAACTTCATCAGACACCAGCATGGAGAACAGTGTAATGAAATCTGCAGAGCTGCTGGGCTCACACACATTACAGCTGCAGGACAGAATTCAGCATTGTAGCTGTAAAGCTgtagcagtgtttccatccacctattactatgcacattttgatttttgcattaaataatgCTCAATGGAAATGCAGAGATGTGCAtcagttttgaaaatgcacatataaGAATGTATGCACAtgactgagtaggataaactacTTTAATCGCTGTGGTTTCTGCTGGTCAGATGATTTGAcggatataaatgtgtgtgtatgagggTGTTTGcatcattaatgttggtctgcagctcTCCATGTTTGCAGCTCTCCAATGTTGCAGATGTGAATTGTTGTTGTGCTGACTGTAAAAGGCCTCAGTCTTCCATCAgtccgtcatcacagtgcttcagtattattcttctttaattattattcactccagaactgtcttgagcatcagtCTGCGCTCCCGTCTCACACTTCCAGAAGCCACCGCATGCACCGCGTTCATTGCGTTCAGTCTtgcgccccattcacacggggcgtcagcgtcagcGCTTCCCATTTATTTTGAataggtgacgtcaggcgttgccgatatgcattgtggatccgtcggagccgcttcagaggcgttgctcgctgcaaaagttgggaccagc
>TCONS_00067038
TCGTTATTAGCTGCTCCAGCTGTGCAGGGTCACGCTATTGACCAGAGCGGGGGTTCTGCCGTCTTTCATTTCTCTTATGACTTTTAAGACACGTCCGTATGATGCTGTGGTTGGCTGAGAGTCAGACACGTGACCCGGAAGCGAAAGGAACTCTAAACGGGATTTTTTAACGCTTcacgtaaacaaacaaacaaaagtttatGATGTGCTCATTTCATCTCGATAAGGAGGATCAGTGTGTTGTCATACTGTCAGAGTCGCGAGTTGATTGTGTTAGATCAGCAGACGGTCGCAGGATTCTCAAGCATGAGTATTGAGCAGGTATCGCTGCTGCTGCAGGAGTGTGTGCGGTGTGCACAGAGTGATAAAACTGAACCCACGGAGCTGCTGCTGCTCCACCGTgGGCAGTTTCCGGATGATCTGAACGCACTCCTGCAGGACGCGGCTGACAGAAAGTGGCCGTTTGTGGAGGAGAAATGGCAGTACAAGCAGTCGGTGTCGTCTGAAGACAAGATCAACTCATCAGAGCTCATCAGGGCTCATCTGCAGGACTTACTGCTCTTCCTCAGAGACTGTATCGCGGCCGATGATCCCGGTTTGGCCGCCGCTGTGCTGTTTCTGCTGGACCGTCTGCTGTACTGGATGGATGGCTCAGAGGGCCTGCTTAAGGTTGCTAAAGCGTTGCACAAACGTTATCCAGACGTTCCCATTGCTCCTCAGGTCATCATCCGGCAGGCTCGGGTTTACCTGAACACCGGTAAACTGAGGAAGGCAGAGTTCATTCTCAGCAGTCTGATCAAAAATAATGCGTCCACAGGTACTGTTCCCTTTCATTGCTTTACATGCGAATATAGCTCAATGCCGTGTCTGTGCTGTGACTGTAATGCTGTTCTGCAGGCTGCTGGTCGTATCAGAAGGCCAGTGATCAGACTCTGGTGCAGGCCGTCTGCCTGCAGGTGCGTGGACAGGTGCTGCAGACGCTGGGTGAGGAACAGAAGAGCGCAAACGCATGACAAGAGTGTCATCAACCCTGAACTGTCTAAACTAGcattctcttcggcttagtccctttatttatcaggggtcgccacagcggaatgaactgacaactattccagcatatgttttatacagtggatgcccttccagcttcaatccagtactgggaaacatttatacacactcattcacacacacacacacactcatagactacggccagtttagcttattcaattcccctatagacaAACTctactcagaaatgccaactgaaccagccgggacttgaaccagaggctttcttgctctgaggcaacagtgctaaccactgagccaccatgccacccccacACCAAGCtcaataacaattaaatgatGATAAATACGTCGTTTTTAAAATGGTTCTGAATGTAAAACATTAGCCGAGTTCAGCCCACAGCTACAACCATAAACATGTAGAGAAACAATAACGTTGGGATCACGTTTAGAATAATAACAGATAATACACCATTTAAACATTACAcactgtgttttaaaaaatgtaaaacgttTAGCACACTTAACGTTTTCTTTAGGTGAAAAATGGGCTTTATGCACATCAAGTTTGTGCTCTAGtttacacgagctggattcactggtcagatgcacTAATAGCACACTGAGGACATCTACTGGTTACAGGAGAATAATGCAAGAAGAAAAAAGATTGATGAtatgttttgttgtcttggtaatgtcaagttgtcatgacaaagacaaaaaccgGTTgggatgtatttgtttatgtcaggtTGTCATAACAAtgtcatatttgcatttaaaatgacacaactgACTGAATGACAGTTGTCATGAGCGTGCATAAAATCTCAGTCACAACATGATTATAAAGTTTTCccgacagtcttatgaacaccccttaaactaaagtgttgaataatgtaatataaaatgtgcGTCTGTAGGTTTGTGGCTGGAATCTGCAGAGCTCTTATGGGCGTCTGTCATCGGCTTTTACACTCTTCCACAGCCTGATAAAAAGGTCAGAGTAACACACATTTGcattatataacatattataatcaCATCAGACTGTGTTTTTGCTGGTGTGTTGTCTAGAACTCTTGAATAtcagcatttgttgttgttttcagggCATTGGAACGTCTCTCGGGCTTCTGGCTAACATACTGACCTCCATGAATGAGCGAGACTTCACGGCGCTCCAGAATAAACCACATATTAAACTGGTAATTAGGTCTGAATGTTGGCTGGGTAGTAGTGGATTACATCCAAGGATTCCATATTCAGATTAGattaaactactttttaaattacttgtaatcagattacagttaCTTTTTAATGGATTGCATATTATTTCCGGAATGGCAGTAAGTTTTTCACAATAAATCGATTCTTTAATAAGTAATCTAAATGGAATACGAAAGgagtttgatttcattttcacaaaagtaatctaaatgtaatccaaaagcagTAGGATTACAttactacaaaaataaaataaatgtaatccaaaagtagtcatatTACATCacaac

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0010467 gene expression biological_process
GO:0043487 regulation of RNA stability biological_process
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway biological_process
GO:0008380 RNA splicing biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:1990247 N6-methyladenosine-containing RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117262

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068646 False 5128 lncRNA 0.46 11 1112303 1133023
TCONS_00067038 True 2567 lncRNA 0.43 5 1123824 1136586

Neighbor

gene id symbol gene type direction distance location
XLOC_034340 dctn1a coding downstream 3368 1062972 ~ 1108935 (-)
XLOC_034339 NA coding downstream 51064 1055674 ~ 1061239 (-)
XLOC_034336 NA coding downstream 75514 914720 ~ 1036789 (-)
XLOC_034338 NA coding downstream 120689 990491 ~ 991614 (-)
XLOC_034337 NA coding downstream 126546 984904 ~ 985757 (-)
XLOC_034342 si:dkey-31g16.2 coding upstream 3219 1139805 ~ 1148539 (-)
XLOC_034343 NA coding upstream 14624 1151210 ~ 1152972 (-)
XLOC_034344 CT030017.2 coding upstream 21024 1157610 ~ 1163829 (-)
XLOC_034345 NA coding upstream 31261 1167847 ~ 1168164 (-)
XLOC_034346 CT030017.1 coding upstream 66535 1203121 ~ 1203239 (-)
XLOC_034334 NA non-coding downstream 257341 828990 ~ 854962 (-)
XLOC_034347 NA non-coding upstream 158226 1294812 ~ 1305257 (-)
XLOC_034348 NA non-coding upstream 170346 1306932 ~ 1321758 (-)

Expression


Co-expression Network