khdrbs1b (LOC106589082)


Basic Information

Item Value
gene id khdrbs1b
gene name LOC106589082
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 68275439 ~ 68295886 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953593.1
gctGCATCGCGCTGAGCTCACTTCCGTGTATTCTTTATTCGACGGACGCATGCTTCCGTCTCCATTTTCATAAAGTCAAGGCGCCGCGACAGGAGCACCTATCCGCAGTTGTCAGTAGCCGTGCGCTATAGCAGCGAGAGCTCTACATGCGAAGAAGTGGAAATTAAACTGGACTATTTCCccttctgtttatttattttttctaccCACTCAAAGCTTGATTTTTAATTGCACATTTTGCATTACGAACTGATTTAAACTCAAAAATGGAGAATCAAGAAAGCGAGTATCTCCCGGAGCTTCTCGCGGAGAAGGACAGTATGGATGTCTCGTTTACGCACGCTATGAAACTTTTATCTACAgAAATCGAGAGAATCCAGAAAGGCGAACCCAAGAAGGAAGGAGGAGACTCGTATCTGGACCTTTTCACCGTCAAGAATATCAAACTGAAGGAACGCGTGCTCATACCCGTCAAACAGTATCCGAGGTTCAACTTTGTGGGGAAGATTCTTGGCCCTCAGGGCAACACAATCAAACGCCTTCAGGAAGAGACTGGGGCCAAGATCTCTGTACTTGGCAAAGGCTCCATGAGGGACAAAGCCAAGGAGGAGGGTCTGAGGAAAGGTGGCGAGGCCAAGTACGCACACCTGTCTATGGAGCTGCATGTCTTCATCGAGGTGTTTGCCCCCGTGCCCGAGGCTTACCTACGCATGGCGCACGCCATGGAGGAAGTCAAAAAGTTCCTGTTTCCTgatatGATGGATGACATCTGTCAGGAACAGTTCATGGAGATGGGTTATTTGAACGGGGGCCAGGAGCACGGGCCAGGGGTCCCACGAGGCAGAGGAGGACCACCGGGCCCAAGGAGCCGAGGAGGGCCTTCGGGACAACCAGGGGCACCCAGGGGTAGGGGTATGCCCCAACGTGGAGGTACCACCAGGGGAGGTCCAGCCAGAGGCGGGGTAGCGAGGGGGGCACCAGCAGGAAGGGGAACCCCTGCCAGAGGGGCAACAGCACCCCGAGCCAGACTCACTGCCCCTGGTGGGCCTCCAAGAACCCTTCCTCCCCCCCACCAACACGCCCCAGCACCGGAACAATATGAGGAATATGCCTATGATGAGAGCTACACTGAGCCAGCGTACGAGTCATACAACAGTTACTACAGTCAGCCACAGGCAGAGCCAGAGTACTACGACTACGGACATGGAGAAACACAGGAAGCATACGAACCCTATGCCCAGGACGACTGGAACGGGACCCAGAGAGTGGCGCCGGGGGGTAAGGCCCCCACTGCCAGAGCGGCTAAGGGCCCTTACCGAGAACACCCCTATAGACAATACTGAACTCATCACCATGCCAACGCCTAGCGACCAACCGTTAACGCGTTGCCCCGACAACCAACCATCAACCTGTCTACCACGGCAGCTCTTGCTCTAAGCAACCCTCGACAAAAGTAATTGTCCGTTTTGTTTTTGGTTTGGAATTTTCTACACTGGACTTTTATGAGCCGAAAATCAGGATCATAACTGATCGAAGCTGATTTGATATTTAATTAAGAccgtaaaagtttttttttttttttttggatggaggtggggggggaTTTGAAGTTTTAGTTGatttctgtttttctctctgaccatgtctccctcttggcTTTTCTTTTGCACTGTTGACTTAAGGTTTCTTTTATTTTTAATGTTTGGATTTAAACTCGCTTCTAGTGGAGTTAGACGACTTATCCACTTGTTGTCGTCTTTAAAGGGACATTTAAAAAACGCTCTACttcatattcattatctccagtTCAACAACAACATATGTGAACGTGGTACGTTTCTACGTTTTTGTAGTTTAAAAAACAAAACTGTTTCCGATGACGACAGTCTGCGACTAATTGACTAATTGACTAATTGACTGACTAATTGACTAATTGACTAATTGACTAATTGACTAATTGGTTGATGTTATTGGAAACAGTTATCTTCATATTTTCACAAGTATTGATGTTGGATCTGGAGATGACGAATATGAAGTAGAACCATTCATTATTTTGTTTAAAACTATACTTTGAGGGACAGTTGCAGATTCCCATTTAGGCTACATtcctattttttttacattttttttttaatttatttttttaataaaataaagtTAAGAAACTTAAACACTGTTTCAATTATGTAATATAGACCAAACCAAAAACGCCAAGTCAAATGGAAACagggaaaaaacaaacaaatgttaATGGAATTTGATTTAACATTCCCATTTGTTTTAAATAGTTTTTAATTAATAGTTGTCAATGtagacttttttttatttttatataatgACATTTTCTCATTGTACATTTAGAGTTTTTGAAATATAGGCCTGATTATCCCCTGTTGAGATGGACTGTCCTCACATActactttttattattaaagtTGGTTCAACAGTAagttcatttttattatttttattatgtcTCTACAGTCgatgtcttttttattttttacaagtaGAATACGGCCTTAGATCGGCCTCATGTCGTGATAAATAATGTCACGTGTCAGTACAGGATCTTATTGGTTGAATCTGATTCTATAAAACTGCATGTAAAAAAAAACGATGCAATGAAGGATTGGGACAAAAAAATCTCCACATGACGGGAGATCCTGCAGCTTTTCAATCTGAGCTCTTGTACATACTTTAAATCGTCCAAATCCACTATTCTGCCACTGGTATATGCATTATGCTCTATGTGTAAGGCTTGCCTAAATAGGTAACTACTAAATCTgtccaaaatatgttttttttgcagcaatttgtCAATAAAGACtagtttgtttttctatgtaa

Function

NR:

description
KH domain-containing, RNA-binding, signal transduction-associated protein 1-like

GO: NA

KEGG:

id description
K13198 KHDRBS1; KH domain-containing, RNA-binding, signal transduction-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953593.1 True 2850 mRNA 0.43 9 68275439 68295886

Neighbor

gene id symbol gene type direction distance location
trnay-gua-61 NA coding downstream 381292 67894060 ~ 67894147 (-)
trnay-gua-60 NA coding downstream 382763 67892589 ~ 67892676 (-)
trnay-gua-59 NA coding downstream 384235 67891117 ~ 67891204 (-)
trnay-gua-58 NA coding downstream 385709 67889643 ~ 67889730 (-)
trnay-gua-57 NA coding downstream 387183 67888169 ~ 67888256 (-)
LOC110496744 LOC106589083 coding upstream 36362 68332248 ~ 68355140 (-)
LOC110496749 hpca coding upstream 104098 68399984 ~ 68469327 (-)
nt5c1aa LOC106589086 coding upstream 246413 68542299 ~ 68602274 (-)
LOC118941211 NA coding upstream 326127 68622013 ~ 68626119 (-)
hpcal4 LOC106570705 coding upstream 330990 68626876 ~ 68699108 (-)
G1576954 NA non-coding downstream 28075 68245579 ~ 68247364 (-)
G1576928 NA non-coding downstream 75459 68199345 ~ 68199980 (-)
G1576911 NA non-coding downstream 109240 68165841 ~ 68166199 (-)
G1576831 NA non-coding downstream 267576 68007470 ~ 68007863 (-)
G1576553 NA non-coding downstream 295521 67979676 ~ 67979918 (-)
G1577044 NA non-coding upstream 129613 68425499 ~ 68426564 (-)
G1577096 NA non-coding upstream 207972 68503858 ~ 68504111 (-)
G1577101 NA non-coding upstream 209674 68505560 ~ 68505774 (-)
G1577104 NA non-coding upstream 213473 68509359 ~ 68509570 (-)
G1577123 NA non-coding upstream 240112 68535998 ~ 68536205 (-)
G1576491 NA other downstream 320227 67915188 ~ 67955212 (-)
G1576222 NA other downstream 833463 67401448 ~ 67441976 (-)
G1575977 NA other downstream 1071952 67203201 ~ 67203487 (-)
LOC118941008 NA other downstream 1216766 67058124 ~ 67058673 (-)
LOC118941007 NA other downstream 1405240 66857937 ~ 66870926 (-)
G1577745 NA other upstream 452726 68748612 ~ 68787686 (-)
G1577996 LOC106589133 other upstream 1017000 69312886 ~ 69315998 (-)
G1578111 NA other upstream 1271298 69567184 ~ 69568164 (-)
G1578132 NA other upstream 1308374 69604260 ~ 69606902 (-)

Expression


Co-expression Network