LOC110496749 (hpca)


Basic Information

Item Value
gene id LOC110496749
gene name hpca
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 68399984 ~ 68469327 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953599.1
ATCCCCTCTACCCCGCTAAACCCAACTCTCTCTCTTATCCCGGTGGAAGCCCGCGCCCTCCCAGCCGTTAGCTGACTCGCTCGGTCTGCTTGTTGTTGTCTCACGGGGCTTGAGTGTGACGTTGTGACGGTATCATGGTTTGCAGGGCTCCGCCGCAGTAGCAGCATAAGAAGAGGAAGAAGCAGGACAGTAGCCGTGTGTACCAAGCAGCCAGTCCGGACTCTCTTCCATCTCCTATCTATCGAGCGGAGGACGCAGCCAGAACAAGCAGAGCATCCCGTCTCTCTCGTTCCCCATCGCTACGCTCGGTGATCATCAGCTCGCGGAGCTCTCGGTTTGATAAAGGGTTGTGACCAGGGACCTGGTAGGTGTTGTTACCGCTGTAGTCCATCGTCTCAGAGACCAAGTGTGTTTCGCCACGGTGTTGCGTCGTTGCCATGGGGAAACAGAACAGCAAGCTGAGGCCGGAGATGCTTCAGGACCTGAGAGAGAACACTGAGTTCTCCGACCACGAACTACAGGAGTGGTACAAgGGCTTTCTGAAGGACTGTCCCAGCGGCAACCTGAACGTGGAGGAGTTCAAGAAGATCTACGCCAACTTCTTCCCGTACGGAGATGCCTCCAAGTTCGCCGAGCACGTCTTCCGAACGTTTGACACCAACAACGACGGCACCATCGACTTCCGGGAGTTCATCATCGCGCTGAGTGTCACGTCACGGGGAAAGCTGGAGCAGAAACTGAAGTGGGCCTTCAGCATGTATGACCTGGATGGGAATGGGTACATCAGCCGTGATGAGATGTTGGAGATCGTACAGgcCATTTATAAGATGGTGTCATCTGTGATGAAGATGCCGGAGGATGAGGCCACGCCGGAGAAGAGAACAGACAAGATCTTCAGACAGATGGACCTCAATAATGatggTAAACTGTCACTGGAAGAGTTCATTAAAGGTGCCAAAAGTGATCCCTCTATCGTGCGGCTACTCCAGTGTGACCCCAGCTCCGCCTCCCAGTTCTAACCCCGCCCACCTGGCCTGCCACGCCCACCCTGATTGCTATGGAAATAGTAACTCCAATTAGTTTATGATGGTTCTCATCACTCATATATTTTTGGTGTACAAGATGGAGGAAGAGTTTTAAAAGGAGATAAAGCAAAAATCATGATCATTttactttactttttttttttaaggaaatAAGGGACATGCATACATTATTATTCAGAAGATGATACGACAACTGAGAATACAAAAAACAAGCCGTTGTCCGATGTgttttactgtctctctctggatccGGAAGGATGGAATTCTGGAAGAATGGGATGGAATTCCAGAAGAATGGGATGGAATTCCGGAAGAATGGGATGGAATTCTAGAAGAATGGGATGGAATTCCGGAAGAATGGGATGGATTTCCGCTGAGCTCCGCTGCCTCACAACGTCAGAAAGTCCGTCTGCCATTTTTACAAAGTCTGTTTATTTTGGGGAAGATAATGAAGGGAACATTCCATCCTGAGAACCATGCATGAGCCATCTGTGTTCTAATCATTCTGTTCAAAAGATTCCGTTTCCCTCCAATTAAGGCACAGCTCCTCCAATCCTCTTCCACTTTCATATCCATATTTATGtgtatatacatgtgtatatGACATTATACGAAATGAATAGGcaagtatatatatacattatatctGTCTTTATAACTCCTGTTGCATTCAGAAGGCAGTATCATGTAGATGTATTGTTTGCTCTGATCCACTATGGGAATTGCCTAATCGTTTGTTCATAGAGGGAACATGGGACCGGGACAGGAAGTTGTGATGTTTCTGATATATGATCTTTCACCGCGGTAAAGAAAGCTATTGGGTTTTTATTACTGATGTTATAAATGTATTGTTATTATTGATTCATTTAACTGTTTTATTGTTATaattttttttgtacataatattgTTTTCCTCGTGTTGTTtacttgtttttatttattttcattgttgtggtttttaatttgatttgacattgaaGATGATTATAACACAGTACGGGAGAGGAATCCattgaaagaaaaagaaagaaatgagGACTGTTCCTTGTCATATGGACATGGACTTGTCTTTGGGAACCGTCCGTCTCTGTCCAAGATGGAATGTGGAGATTCCAAAATTCGGCGTTGGAAGGGAAAAATTGGAATATTCTAGAATATTTATATCAGGTGATTCCATAATGCATTTGATCAATGAAACCAGTAGCAACACATCATATAATTTGAGCCGCCACGAGTGTATGCacgcatgtatgtgtgtgtgtgtgtgtgtgtgtatgttttttttgtgtgcatgtgtgtacagtTTGTGTGCATGTCCAGGCTTTAAACTTTAACAGTATTATACATTCGTGTTGTTTATTATTAATATGTCATATAAGTATTTAAAGTTAGTTATTTTAACACTTTATCGCATCGCTGAGCGGTGAAGTACAGTAGCCACGTCGTCACACGCCTCACTGCATGGTGCACAAAACAACACACGAAAACCCCCATCACAAAACAGTTCCATTTCATAGCTCTACTTTCTTCAGCAGCACTCTTACATCAGCCTACCAGACCGCACACAGAAGACACACCGACATGCCGTCTTTGCGCACTCTTGTGCGCGTGTGTCACTTTGGGACAAACCCCCTCCCTCCTGCCTTCTGCCAGACACAGAGCACAACACACTAAGGGCTTGATTATCTCTATCCCTGCTGGTCTTGATTATCTCTATCCCAGCTAACCTTGATTATCTCTATCCCTGCTGGTCTTGATTATCTATATCCCTGCTGGTCTTGATTATCTCTATCCCTGCTGGTCTATATTATCTCTATCCCTGCTGGTCTATATTATCTCTATCCCTGCTGGTCTTAATTAATGATCTCTATCCCTGCTGTTCTTAATTATCTCTATCCCTGCTGGTCTTAATTATCCCTATCCCAGTGCTGTTCTTGATTATCTCTGTCCCAGTGCTGGTCTTGATTATCTCTATCCCAGTGCTGTTCTTGATTATCTCTATCCCAGTGCTGTACTTGATTATCTCTATCCCAGTGCTGTTCTTGATTATCTATATCCCAGTGCTGTTCTTGATTATCTCTATCCCAGTGCTGTTCTTGATTATTTCTATCCCAGTGCTGTTCTACCTTCCTTTTCAATGTGTTAACCGAGACAGTAGAcagtggaattgttttaaggcaAAGATCACTTAGAGGTTGCATTCCAAGTGACGCCCTATACCTTGTAGACTCCACTACTGGTGACAGTCAAGGCCCAGAGGACTCTGAATGAGCGCACCGTAAAACTTTAGTATAAGGGTAGGTAATAAACCATTTATAAACCATTAATAAACTATTAATAAACCATTAATAAACTAGTAATAAACTATTAATAAACAATTTATAAACCATTTATAAACCGTTTTCTCGCCATGTATTAATCATGACTCCCACATGTgtaaatgtcaaatcaaattgtatttgtcacatacacacggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgaccacgcagtaatatcgaacaagaaatctaacctaacaatttcacacaacaaccaccttatacacacacaagtgtaaaggaatgaataagaatatgtacataaaaatatataaatgaatgTCAGGAAGCTAGTTATTCAgacatgtgtatatatagttcCTTAAACATCCTGTGTTGTGCGTTGGTTCTATCGCCAGGTACTGCTGGAATGTCTACCAACAGCATGTCCATCATGTTGTGACAAATTACACCGCTCACTCCATGTTATATCGTATTTATTACATAAATGGCTTTCACTTTATATTAGGGGCTGCAAAAAGACCTTACTGATGATTAGTAAATGGTTAATTAATGATTAATACATGGTGAACACACACTTTATAAATGCCTTATAAATTATTTATTACAGTCCCTTAAAATGAAGCGTTAccgagtgcacacttcaggagaaaggagatatTATTTGAAATGCACGCCTAGTTTCCCACAATGTGTACTGCACCTCTACTATGGGCTCCCAGTTCACTGCCCCCTGGTGGTTGGATGTGATTCCAGGGTCACTGCCCCCTGGTGGTTGGATGTGCTTCCAGGGTCACTGCCCCCTGGTGGTTTGATGTGCTTCCAGGGTCACTGCCCCCTGGTGGTTGGGTGGGGAATATTTGCTTCTCCACTAATGCAAAATTATGGTAACGTTCCCAAAATGTCCAGGTTTTCTAGAACTCCTGATTTTAAAAAAAGATTcccagatttcctgcttattccagGAATTCTTCTAATTTGTATTTCTGGAAAAACCTGGACAATTTGGTAAAGTTACCCGACACCGTCCTACCTAACCTTTTTCTGTTCTAACTGCCTCAAACTAATAACTTGAGTTGGATCGAGATTAAAAACAAACAACTCTTTCTTCCTCCCTTGTTTCTGTTGCATGACAACCTCTAGTTGAGGATGGATTGTTCTGTTTTGAACCGAAATCGATAACAAATATACCTTCTGTGTTTCAAACATG

Function

symbol description
hpca Predicted to enable calcium ion binding activity. Is expressed in hatching gland; nervous system; neural rod; and neural tube. Human ortholog(s) of this gene implicated in torsion dystonia 2. Orthologous to human HPCA (hippocalcin).

NR:

description
PREDICTED: neuron-specific calcium-binding protein hippocalcin

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23847 HPCAL1; hippocalcin-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953599.1 True 4581 mRNA 0.42 5 68399984 68469327

Neighbor

gene id symbol gene type direction distance location
LOC110496744 LOC106589083 coding downstream 44844 68332248 ~ 68355140 (-)
khdrbs1b LOC106589082 coding downstream 104098 68275439 ~ 68295886 (-)
trnay-gua-61 NA coding downstream 505837 67894060 ~ 67894147 (-)
trnay-gua-60 NA coding downstream 507308 67892589 ~ 67892676 (-)
trnay-gua-59 NA coding downstream 508780 67891117 ~ 67891204 (-)
nt5c1aa LOC106589086 coding upstream 72972 68542299 ~ 68602274 (-)
LOC118941211 NA coding upstream 152686 68622013 ~ 68626119 (-)
hpcal4 LOC106570705 coding upstream 157549 68626876 ~ 68699108 (-)
trit1 LOC106594867 coding upstream 469278 68938605 ~ 68996503 (-)
myclb LOC106593562 coding upstream 527942 68997269 ~ 69010704 (-)
G1576954 NA non-coding downstream 152620 68245579 ~ 68247364 (-)
G1576928 NA non-coding downstream 200004 68199345 ~ 68199980 (-)
G1576911 NA non-coding downstream 233785 68165841 ~ 68166199 (-)
G1576831 NA non-coding downstream 392121 68007470 ~ 68007863 (-)
G1576553 NA non-coding downstream 420066 67979676 ~ 67979918 (-)
G1577096 NA non-coding upstream 34531 68503858 ~ 68504111 (-)
G1577101 NA non-coding upstream 36233 68505560 ~ 68505774 (-)
G1577104 NA non-coding upstream 40032 68509359 ~ 68509570 (-)
G1577123 NA non-coding upstream 66671 68535998 ~ 68536205 (-)
G1577128 NA non-coding upstream 68175 68537502 ~ 68537837 (-)
G1576491 NA other downstream 444772 67915188 ~ 67955212 (-)
G1576222 NA other downstream 958008 67401448 ~ 67441976 (-)
G1575977 NA other downstream 1196497 67203201 ~ 67203487 (-)
LOC118941008 NA other downstream 1341311 67058124 ~ 67058673 (-)
LOC118941007 NA other downstream 1529785 66857937 ~ 66870926 (-)
G1577745 NA other upstream 279285 68748612 ~ 68787686 (-)
G1577996 LOC106589133 other upstream 843559 69312886 ~ 69315998 (-)
G1578111 NA other upstream 1097857 69567184 ~ 69568164 (-)
G1578132 NA other upstream 1134933 69604260 ~ 69606902 (-)

Expression


Co-expression Network