LOC118941211


Basic Information

Item Value
gene id LOC118941211
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 68622013 ~ 68626119 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037544.1
gataCGAACATTGATgatagtgatggtgatggtgttgatagtgatggtgatattagtgatggtgatggtagtgatggtgatggtagtgatggtgaTGATACGAACATTGACGATAGTGATGGTGTTGATAGTGATGGTGATGTGTTGATAGTGATGTGATGATGGTGAAGGTGTtgatagtgatggtgatgatagtgatggtagtgatggtgatggtagtgatggtgatggtgttgatagtgatggtgatgatagtgatggtgatgataCGAACATTGATgatagtgatggtgatggtgatggtgttgatagTGAGTCTTCAAATGTCATGGGGAAAAGACGACACATTTCGACATCTACTAACAGAGCCGTGGTGCCATTGTTTCATGATGCTCAATGATAATTGCAGGTTGCTGGTTGATCCGCTAACGATCAAAGCCTCCATATTTCTCCTGTTTCTTCTAAAAAAGTCTCAAAAAGCCATCctcccatcttcctctcctcatttcctctcctcctcttcatcctcctcttcctcctgctcttcaaatgtcaggcagacagagggatgTAACAGGTGGTTGAGGAGAGAGTGATTTTTGAACTCAGTCGAGAAAAgagtaagttgtgtgtgtgtgtgtgggggggtgtctATGTTTCTAGTCCAATGGCTAGACACCGGAAATCTTagtgtcctgtagatagaggagGCGAAGCGATGGAACTTCCCTAGCCATTGGCGTTTCTCCCTCGTCCTTAAGCCAATCAGAATGTTCCCTCCCTTTAAAGAGAGACAAGCTCTAGCCTTTTTCTGTTAATTGTGAAACTATGATGAAATGATTATGACAATAAGCGTATGTATGAATATAAACGTATGTAATAATGTACATGACAATGTAACACTAAAACCTACAGCTTCTttcacatgacaacacagctacAGTGGTTTGGGTATAAgaagataatgtgtgtgtgtgtgtgtgtgtgtgtgtgcttgtgaatGTATTTGTGTGCACATTTATATTTATGAGCTTTTGTCTTTTGTGAGAGCATTCACAtgcattgtctgtgtgtgtgtgtgttctgtcgtgcctgcctgtgtgtgtttgtgtgttccttcctgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaacagagatGCCTCAGCAGTCCATATGGACATTCTAGGTTCCCTGTGTACTTTCCTGACCCATAGAGAGACCCATAGAGAGACCCATAGAGAAACCCATAGAGAGACCCATAGAGAAACCcatagggagacccatagggagacccatagggagACCCATAGAGAGACCCATAGGAAGACCCATAGGGAGACCCATAGAGAGACCCATAGGGAGACCCACAGGGAGACCCATAGGGAGACCCATAGAGAGACCCATAGAGTCTCATAGAGAGACCCATAGAGAGACCCATAGGAAGACCCATAGAGATACCCATAGGGTGACCCATAGAGAGACCCGTGACCCATAGAGAGACCCGTGACCCATAGAGAGACCCATAGGGAGCCCCATAGAGAGACCCATAGAGAGACCCATAGAGACACCCATAGTGAGACCCATAGGGAGACCAATAGGGAAACTCATAGAGAGACCCATAGGGAGATCCACAGAGAAACCCATAGAGAGACCCATAGGGAGACCCGTGACCcatagggagacccatagggaaacccatagggAGACCCACAGAGAGATCCACAGAGAGATCCACAGAGAGACCCATagagagacccacagagagacccacagagagacccacagagagacccacagagagacccacagagagaCCCACAGGGAGACCCATAGAGAGACCCATAGGGAGACCCATATGGGGAATTATATTTCGGGTTCATGTTGCTTCTTGTCTGCAGCTCTCCGTTGAATGTTGCTGAGGTTTGATTTGGTTATTATCTGTATTCCCATTGCAGCTATCTGTTGAATGTTACTGTGGTTTCATATATTTTTGATATTTGATTGTATTGCTACCCCAGGGGTAATCTAATTGTGGGTTTAGGATTTGTTTAAGCTTGCTTCCTTGGACATAGTCAGTTGGCCTCGTTGGTCCCTGGAAAACTAGTCTTATTCAAATGTTATGAATAGGTTTTTCACTTGACATCAATACAATACACGATACTGATATGTTTGTTTGAATCAGGTTTAATACGGTGGACCGTTAAAATATACCACTTCTCTGTGGAATGTTGATTTAGATGGAGGACCAACCAACCTATTCAGAAATAACACACGATGATACGGAAACAGAAAAGATAGAATGAAACCAACCCCTTAAATATGACTACGAATCTGCATAATTGTATTTATGAATTTAAATCTATTCTAATCTGTGTCAGGGAAACCCCTTGTGTCCAATGCAAGATTATTCTGCCTTGACATGATGTGAATGTGTGTCTCGTTTATGAattttgttcagtttatgtttttcaGTTTGGCTTTTCTTAGAACTAAGAAcaatttttattatttttgttaCATAGAATAAAAACACTTTGATGTTGAAATGA
>TU1804691
gagagagagagggaggaaaaaggaggggggTGTATATTGAAAAACAGGAGGACAGTGATGTACGTTTATCCTCAAGCTGTCAGGGAGATAATAGAGCATTCACAGGGTCAGACGCAGCATTCTGGTCAaaccacaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgggcgAGAGTTCGTGGTCAGATCATGCAAAACGACAGTTTCCAGTCATTCACTAAAGCTGGCCTCTAAAAGACGGACATGGTACAGAATACATTAGGCTTTTCAATCCCCCGTTATGTAGATACTAAAGCCCCTCTCAGACAGTCTGACATAGTGATGGTCGTGATTGTGATGATAGTGATGGTGTTgatagtgatggtgatggtgatgatagtgatggtgatggtgatgatagtgatggtgatggtgatgatggtgatcaTAGttttggtgatgatggtgatggtgttgatagtgatggtgatgatCGTGATGGTGATGGTGCTGATAGTGATGGTGCTGATAGTGATGGTGATTATAGTGATGTCATGATTGTGATGGTCATGATTGTGATGGTCATGATTGTGATTGTGATgataCGAACATTGATgatagtgatggtgatggtgatggtgttgatagTGAGTCTTCAAATGTCATGGGGAAAAGACGACACATTTCGACATCTACTAACAGAGCCGTGGTGCCATTGTTTCATGATGCTCAATGATAATTGCAGGTTGCTGGTTGATCCGCTAACGATCAAAGCCTCCATATTTCTCCTGTTTCTTCTAAAAAAGTCTCAAAAAGCCATCctcccatcttcctctcctcatttcctctcctcctcttcatcctcctcttcctcctgctcttcaaatgtcaggcagacagagggatgTAACAGGTGGTTGAGGAGAGAGTGATTTTTGAACTCAGTCGAGAAAAgagtaagttgtgtgtgtgtgtgtgggggggtgtctATGTTTCTAGTCCAATGGCTAGACACCGGAAATCTTagtgtcctgtagatagaggagGCGAAGCGATGGAACTTCCCTAGCCATTGGCGTTTCTCCCTCGTCCTTAAGCCAATCAGAATGTTCCCTCCCTTTAAAGAGAGACAAGCTCTAGCCTTTTTCTGTTAATTGTGAAACTATGATGAAATGATTATGACAATAAGCGTATGTATGAATATAAACGTATGTAATAATGTACATGACAATGTAACACTAAAACCTACAGCTTCTttcacatgacaacacagctacAGTGGTTTGGGTATAAgaagataatgtgtgtgtgtgtgtgtgtgtgtgtgtgcttgtgaatGTATTTGTGTGCACATTTATATTTATGAGCTTTTGTCTTTTGTGAGAGCATTCACAtgcattgtctgtgtgtgtgtgtgttctgtcgtgcctgcctgtgtgtgtttgtgtgttccttcctgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaacagagatGCCTCAGCAGTCCATATGGACATTCTAGGTTCCCTGTGTACTTTCCTGACCCATAGAGAGACCCATAGAGAGACCCATAGAGAAACCCATAGAGAGACCCATAGAGAAACCcatagggagacccatagggagacccatagggagACCCATAGAGAGACCCATAGGAAGACCCATAGGGAGACCCATAGAGAGACCCATAGGGAGACCCACAGGGAGACCCATAGGGAGACCCATAGAGAGACCCATAGAGTCTCATAGAGAGACCCATAGAGAGACCCATAGGAAGACCCATAGAGATACCCATAGGGTGACCCATAGAGAGACCCGTGACCCATAGAGAGACCCGTGACCCATAGAGAGACCCATAGGGAGCCCCATAGAGAGACCCATAGAGAGACCCATAGAGACACCCATAGTGAGACCCATAGGGAGACCAATAGGGAAACTCATAGAGAGACCCATAGGGAGATCCACAGAGAAACCCATAGAGAGACCCATAGGGAGACCCGTGACCcatagggagacccatagggaaacccatagggAGACCCACAGAGAGATCCACAGAGAGATCCACAGAGAGACCCATagagagacccacagagagacccacagagagacccacagagagacccacagagagacccacagagagaCCCACAGGGAGACCCATAGAGAGACCCATAGGGAGACCCATATGGGGAATTATATTTCGGGTTCATGTTGCTTCTTGTCTGCAGCTCTCCGTTGAATGTTGCTGAGGTTTGATTTGGTTATTATCTGTATTCCCATTGCAGCTATCTGTTGAATGTTACTGAGGTTTGATTTGGTTATTATCTGTATTCCCATTGCAGCTATCTGTTGAATGTTACTGTGGTTTCATATATTTTTGATATTTGATTGTATTGCTACCCCAGGGGTAATCTAATTGTGGGTTTAGGATTTGTTTAAGCTTGCTTCCTTGGACATAGTCAGTTGGCCTCGTTGGTCCCTGGAAAACTAGTCTTATTCAAATGTTATGAATAGGTTTTTCACTTGACATCAATACAATACACGATACTGATATGTTTGTTTGAATCAGGTTTAATACGGTGGACCGTTAAAATATACCACTTCTCTGTGGAATGTTGATTTAGATGGAGGACCAACCAACCTATTCAGAAATAACACACGATGATACGGAAACAGAAAAGATAGAATGAAACCAACCCCT

Function

NR:

description
PREDICTED: extended synaptotagmin-1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037544.1 False 2558 mRNA 0.43 2 68622013 68624627
TU1804691 True 2716 TUCP 0.45 3 68622248 68626119

Neighbor

gene id symbol gene type direction distance location
nt5c1aa LOC106589086 coding downstream 19739 68542299 ~ 68602274 (-)
LOC110496749 hpca coding downstream 152686 68399984 ~ 68469327 (-)
LOC110496744 LOC106589083 coding downstream 266873 68332248 ~ 68355140 (-)
khdrbs1b LOC106589082 coding downstream 326127 68275439 ~ 68295886 (-)
trnay-gua-61 NA coding downstream 727866 67894060 ~ 67894147 (-)
hpcal4 LOC106570705 coding upstream 2249 68626876 ~ 68699108 (-)
trit1 LOC106594867 coding upstream 313978 68938605 ~ 68996503 (-)
myclb LOC106593562 coding upstream 372642 68997269 ~ 69010704 (-)
spag1a LOC106589120 coding upstream 613416 69238043 ~ 69262807 (-)
LOC110496771 NA coding upstream 643283 69267835 ~ 69269425 (-)
G1577245 NA non-coding downstream 8833 68612869 ~ 68613180 (-)
G1577243 NA non-coding downstream 12747 68608927 ~ 68609266 (-)
G1577242 NA non-coding downstream 13444 68608313 ~ 68608569 (-)
G1577241 NA non-coding downstream 17374 68604390 ~ 68604639 (-)
G1577218 NA non-coding downstream 19104 68541907 ~ 68602909 (-)
G1577265 NA non-coding upstream 38805 68663432 ~ 68666147 (-)
G1577279 NA non-coding upstream 76358 68700985 ~ 68701309 (-)
G1577293 NA non-coding upstream 92740 68717367 ~ 68717647 (-)
G1577735 NA non-coding upstream 107859 68732486 ~ 68732724 (-)
G1577751 NA non-coding upstream 133902 68758529 ~ 68759063 (-)
G1576491 NA other downstream 666801 67915188 ~ 67955212 (-)
G1576222 NA other downstream 1180037 67401448 ~ 67441976 (-)
G1575977 NA other downstream 1418526 67203201 ~ 67203487 (-)
LOC118941008 NA other downstream 1563340 67058124 ~ 67058673 (-)
LOC118941007 NA other downstream 1751814 66857937 ~ 66870926 (-)
G1577745 NA other upstream 123985 68748612 ~ 68787686 (-)
G1577996 LOC106589133 other upstream 688259 69312886 ~ 69315998 (-)
G1578111 NA other upstream 942557 69567184 ~ 69568164 (-)
G1578132 NA other upstream 979633 69604260 ~ 69606902 (-)
G1578107 NA other upstream 986876 69611503 ~ 69615183 (-)

Expression


Co-expression Network