hpcal4 (LOC106570705)


Basic Information

Item Value
gene id hpcal4
gene name LOC106570705
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 68626876 ~ 68699108 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953602.1
CGGACACGACGTGTTGGCTCAGAGTTTCTGTTTTGATTGACAATTCAGATCGTCCAATTACATCGTCCAGAACGATTATTTTGAGACTCTTCCCCCAATCAGGTGCAGTCCTGAGGCGGGGTCCTTTAGGCACATTTGTTGTCAAGGGTGACGCAAGCGTTCATTCATTTTcactgaaaggagagagagagcgaacgagagagagcgaacgagagagagcgaacagagagagagcgaacgagagagagTGAGTCAACGGGACAACTTGCTGTAGTGGAGTAGACTTCACTTGTTTCAGAGCTTTTGAGAAAATAATTGCAGAAACACGGTGAAAAGATTGATCTGAAGGATCTAGTGCTCTTCCACATATTCCAAGAGAGGAGACTTTGTGATGGGGAAAGGAAACAGTAAGCTGGCaccagaggtcctggatgacctCACCAAGAGTACTGAGTTCAACGAGGCTGAGCTCAAGCAGTGGTACAAAGGCTTCCTCAAAGACTGTCCCTCTGGTATACTGAACCTAGAGGAGTTCCAACAGTTATATGTcaagTTCTTTCCGTACGGCGACGCGTCTAAGTTCGCCCAGCACGCCTTCCGGACCTTCGATAAGAACGGGGACGGGACCATCGACTTCCGGGAGTTTATCTGTGCCCTGTCAATCACCTCGAGGGGGAGCTTTGAGCAGAAACTCAACTGGGCCTTCAACATGTACGACTTAGACGGAGACGGCAAGATCACACGCATGGAGATGCTGGAGATCATAGAGGCGATCTACAAGATGGTTGGCACTGTGATAATGATGCGTATGAACGAGGACGGGCTGACTCCCCAGCAGCGCGTGGATAAGATCTTCTCCAAGATGGATAAAGATCACAACGATGAGATCACGCTGGACGAGTTCAAAGAGGCAGCCAAGAGTGATCCCTCCATCGTCCTACTGCTACAGTGTGACATGCagaaatagagga

Function

NR:

description
PREDICTED: hippocalcin-like protein 4

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19936 VSNL1; visinin-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953602.1 True 971 mRNA 0.49 5 68626876 68699108

Neighbor

gene id symbol gene type direction distance location
LOC118941211 NA coding downstream 2249 68622013 ~ 68626119 (-)
nt5c1aa LOC106589086 coding downstream 24602 68542299 ~ 68602274 (-)
LOC110496749 hpca coding downstream 157549 68399984 ~ 68469327 (-)
LOC110496744 LOC106589083 coding downstream 271736 68332248 ~ 68355140 (-)
khdrbs1b LOC106589082 coding downstream 330990 68275439 ~ 68295886 (-)
trit1 LOC106594867 coding upstream 239497 68938605 ~ 68996503 (-)
myclb LOC106593562 coding upstream 298161 68997269 ~ 69010704 (-)
spag1a LOC106589120 coding upstream 538935 69238043 ~ 69262807 (-)
LOC110496771 NA coding upstream 568802 69267835 ~ 69269425 (-)
LOC110496775 LOC106589130 coding upstream 634506 69333614 ~ 69377896 (-)
G1577245 NA non-coding downstream 13696 68612869 ~ 68613180 (-)
G1577243 NA non-coding downstream 17610 68608927 ~ 68609266 (-)
G1577242 NA non-coding downstream 18307 68608313 ~ 68608569 (-)
G1577241 NA non-coding downstream 22237 68604390 ~ 68604639 (-)
G1577234 NA non-coding downstream 37715 68587057 ~ 68589161 (-)
G1577279 NA non-coding upstream 1877 68700985 ~ 68701309 (-)
G1577293 NA non-coding upstream 18259 68717367 ~ 68717647 (-)
G1577735 NA non-coding upstream 33378 68732486 ~ 68732724 (-)
G1577751 NA non-coding upstream 59421 68758529 ~ 68759063 (-)
G1577776 NA non-coding upstream 144965 68844073 ~ 68847564 (-)
G1576491 NA other downstream 671664 67915188 ~ 67955212 (-)
G1576222 NA other downstream 1184900 67401448 ~ 67441976 (-)
G1575977 NA other downstream 1423389 67203201 ~ 67203487 (-)
LOC118941008 NA other downstream 1568203 67058124 ~ 67058673 (-)
G1577745 NA other upstream 49504 68748612 ~ 68787686 (-)
G1577996 LOC106589133 other upstream 613778 69312886 ~ 69315998 (-)
G1578111 NA other upstream 868076 69567184 ~ 69568164 (-)
G1578132 NA other upstream 905152 69604260 ~ 69606902 (-)
G1578107 NA other upstream 912395 69611503 ~ 69615183 (-)

Expression


Co-expression Network