trit1 (LOC106594867)


Basic Information

Item Value
gene id trit1
gene name LOC106594867
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 68938605 ~ 68996503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953605.1
TCTAAAGCGCGTGTCTGATCAGCTGGGAACGACGGTAAAAGCAACATGGCGGCGCCCGTGCGAGGCTTGCAGTGTGCTCTGAAAAAGAGTATTGTACCACCGTTAGTCGTGATTTTAGGAGCAACCGGTACTGGGAAGTCTAAACTGGCGATTGAAATTGGTAAACGACGTCAGGGAGAGATAATCAGTGCCGATTCCATGCAGgtGTATCGTGGGCTGGACATCATAACCAATAAGGTGACTGCTGAGGAGCGTGCCCAGTGCAGTCATCACATGATCAGCTTCGTGGATCCCTTGGTCAGCAGCTACACTGTGGTAGACTTCAGGAACAAGGCCCTGGCTCTCATAGAAGACGTGTACAGCAGAGAGAAGCTGCCTGTCATAGTAGGAGGAACTAACTACTACATAGAATCACTGCTGTGGAGAGTACTGATGGATGAAGGGGTAAGAGCCACACTCCTCACCCCTAACTCACCCCTACATCAGTCATTGCTGTGGAGAGTACTGATGGATGAAGGGcatgagaatgaaggagaggggaagaaaggcGGGTCTCTTGACGGGAAGGCGGAGCTCGAGAAACTGGGCGGGGCTGAGCTCCACAGGAGACTGACCGAGGTCGATCCTGAAATGGCCTCCATGCTACATCCTCACGACACACGCAAGATTGCCAGGAGCCTACAGGTGCATGCGGACACAGGCGTGCCTCACAGCCATTGgttggaggagcagagagggcaGGAGGGGGGAGATGTGCTGGGGGGGCCACTGAGGTACCCAGACCCCTGTATCTTCTGGTTACATGCTGACATGGAGGCCATAGATGAGCGCTTGGACCGGCGTGTGGATCAGATGCTGTTGACAGGCCTGATAGACGAGCTCAGAGATTTCCACCTGAGATTCAACCAGCAGAAGATTCAGGACCAGAGtcaggACTACCAGCATGGTATATTCCAGTCTATAGGTTTTAAGGAGTTCCATGAGTACCTGACATGTCCTGATGAGACGACACAGGAGGTCCGAGAGACACTCCGGaaccaagGACCAGGGGACAACGTCCCTGCGGTGTATGGTCTGGATGTGACTGACGTGTCACAGTGGGAGGAGACTGTCCTAAGCCCAGCCCTTCTCATACTGGATAGTCTTACTAAGGGGGAGCGACCTACCGTTGAGCCAATGAGAGTGGAGGGGGCGGGGAAGAGGAACAAGCGAAGCCGTCACACCTGTGAGCTGTGTGACAAGGTGATCATTGGAGATCTGGAGTGGACAGCCCATCTCAAGTCTAAAAAACACCACTATCATGTGAGGAAAAGGAGGAAGTGCGAGCCCGAACCTGAACCAGCCAGCCACCAGCCCCAGGGGACTACTCCACCTCCCACCTCTACTACAGATGGCCCTACCTTGGGTAACTCCACTACTCTAGCCCCTGGCTCAGCTGAGGCCTGTGGAGAACCAGAGTCCCCAGGTACCAGTTCTACTGAGAAAGAAGCCCCAGTTCTATAGGAGAGGAGGTATGCTTCACTATAAGGCCCTATGATCAGTATTGCTGATGGGACAGAAGTCAGTCTTTTTGGCCTCAGCTTGTCGGATTGACTCCTGTTAAATCAGAAAGATAAAACGGAACAATCAAAGACActtaaaaagtaaataaaaaataatggatTATCTGAGGACAACACAGAGACCGGGGAGAAGTCGGTCTCTTGACGACATCACCGCTATGACATCATCACTCCTGTCTATGACTTCATCGTTGTTGGACTCCAAGCTCATGGATTTGGTCGGTTTTGGTTCCTTGGATTCTGAAGTGAAGTTGAATTGTGACAGAACTCTCAAATGGAATGACAGTTGATGTTCTACAGCAGGGTTCAATAAGACCCCCAACCGTCTCTGTCCTCGTCAGGTAACCTGTCTAGTAAACACACTCTATGGCAACTGCTGTGTTTGTAACGAGATGTACATGTGTCTGCATTGTAATTAttataattaaagatacatttttttttttttaatatga
>XM_036953606.1
CTAAAGCGCGTGTCTGATCAGCTGGGAACGACGGTAAAAGCAACATGGCGGCGCCCGTGCGAGGCTTGCAGTGTGCTCTGAAAAAGAGTATTGTACCACCGTTAGTCGTGATTTTAGGAGCAACCGGTACTGGGAAGTCTAAACTGGCGATTGAAATTGGTAAACGACGTCAGGGAGAGATAATCAGTGCCGATTCCATGCAGgtGTATCGTGGGCTGGACATCATAACCAATAAGGTGACTGCTGAGGAGCGTGCCCAGTGCAGTCATCACATGATCAGCTTCGTGGATCCCTTGGTCAGCAGCTACACTGTGGTAGACTTCAGGAACAAGGCCCTGGCTCTCATAGAAGACGTGTACAGCAGAGAGAAGCTGCCTGTCATAGTAGGAGGAACTAACTACTACATAGAATCACTGCTGTGGAGAGTACTGATGGATGAAGGGcatgagaatgaaggagaggggaagaaaggcGGGTCTCTTGACGGGAAGGCGGAGCTCGAGAAACTGGGCGGGGCTGAGCTCCACAGGAGACTGACCGAGGTCGATCCTGAAATGGCCTCCATGCTACATCCTCACGACACACGCAAGATTGCCAGGAGCCTACAGGTGCATGCGGACACAGGCGTGCCTCACAGCCATTGgttggaggagcagagagggcaGGAGGGGGGAGATGTGCTGGGGGGGCCACTGAGGTACCCAGACCCCTGTATCTTCTGGTTACATGCTGACATGGAGGCCATAGATGAGCGCTTGGACCGGCGTGTGGATCAGATGCTGTTGACAGGCCTGATAGACGAGCTCAGAGATTTCCACCTGAGATTCAACCAGCAGAAGATTCAGGACCAGAGtcaggACTACCAGCATGGTATATTCCAGTCTATAGGTTTTAAGGAGTTCCATGAGTACCTGACATGTCCTGATGAGACGACACAGGAGGTCCGAGAGACACTCCGGaaccaagGACCAGGGGACAACGTCCCTGCGGTGTATGGTCTGGATGTGACTGACGTGTCACAGTGGGAGGAGACTGTCCTAAGCCCAGCCCTTCTCATACTGGATAGTCTTACTAAGGGGGAGCGACCTACCGTTGAGCCAATGAGAGTGGAGGGGGCGGGGAAGAGGAACAAGCGAAGCCGTCACACCTGTGAGCTGTGTGACAAGGTGATCATTGGAGATCTGGAGTGGACAGCCCATCTCAAGTCTAAAAAACACCACTATCATGTGAGGAAAAGGAGGAAGTGCGAGCCCGAACCTGAACCAGCCAGCCACCAGCCCCAGGGGACTACTCCACCTCCCACCTCTACTACAGATGGCCCTACCTTGGGTAACTCCACTACTCTAGCCCCTGGCTCAGCTGAGGCCTGTGGAGAACCAGAGTCCCCAGGTACCAGTTCTACTGAGAAAGAAGCCCCAGTTCTATAGGAGAGGAGGTATGCTTCACTATAAGGCCCTATGATCAGTATTGCTGATGGGACAGAAGTCAGTCTTTTTGGCCTCAGCTTGTCGGATTGACTCCTGTTAAATCAGAAAGATAAAACGGAACAATCAAAGACActtaaaaagtaaataaaaaataatggatTATCTGAGGACAACACAGAGACCGGGGAGAAGTCGGTCTCTTGACGACATCACCGCTATGACATCATCACTCCTGTCTATGACTTCATCGTTGTTGGACTCCAAGCTCATGGATTTGGTCGGTTTTGGTTCCTTGGATTCTGAAGTGAAGTTGAATTGTGACAGAACTCTCAAATGGAATGACAGTTGATGTTCTACAGCAGGGTTCAATAAGACCCCCAACCGTCTCTGTCCTCGTCAGGTAACCTGTCTAGTAAACACACTCTATGGCAACTGCTGTGTTTGTAACGAGATGTACATGTGTCTGCATTGTAATTAttataattaaagatacatttttttttttttaata

Function

NR:

description
tRNA dimethylallyltransferase, mitochondrial

GO: NA

KEGG:

id description
K00791 miaA, TRIT1; tRNA dimethylallyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953605.1 False 2017 mRNA 0.50 10 68938605 68996503
XM_036953606.1 True 1938 mRNA 0.50 10 68938608 68996502

Neighbor

gene id symbol gene type direction distance location
hpcal4 LOC106570705 coding downstream 239497 68626876 ~ 68699108 (-)
LOC118941211 NA coding downstream 313978 68622013 ~ 68626119 (-)
nt5c1aa LOC106589086 coding downstream 336331 68542299 ~ 68602274 (-)
LOC110496749 hpca coding downstream 469278 68399984 ~ 68469327 (-)
LOC110496744 LOC106589083 coding downstream 583465 68332248 ~ 68355140 (-)
myclb LOC106593562 coding upstream 766 68997269 ~ 69010704 (-)
spag1a LOC106589120 coding upstream 241540 69238043 ~ 69262807 (-)
LOC110496771 NA coding upstream 271407 69267835 ~ 69269425 (-)
LOC110496775 LOC106589130 coding upstream 337111 69333614 ~ 69377896 (-)
LOC110496768 LOC106589124 coding upstream 716544 69713047 ~ 69726728 (-)
G1577811 NA non-coding downstream 23810 68913637 ~ 68914795 (-)
G1577793 NA non-coding downstream 48505 68886437 ~ 68890100 (-)
G1577787 NA non-coding downstream 66725 68870179 ~ 68871880 (-)
G1577782 NA non-coding downstream 76346 68861669 ~ 68862259 (-)
G1577781 NA non-coding downstream 77108 68860392 ~ 68861497 (-)
G1577854 NA non-coding upstream 14272 69010775 ~ 69011122 (-)
G1577859 NA non-coding upstream 27989 69024492 ~ 69024772 (-)
G1577860 NA non-coding upstream 28503 69025006 ~ 69025312 (-)
G1577862 NA non-coding upstream 34068 69030571 ~ 69030896 (-)
G1577745 NA other downstream 150919 68748612 ~ 68787686 (-)
G1576491 NA other downstream 983393 67915188 ~ 67955212 (-)
G1576222 NA other downstream 1496629 67401448 ~ 67441976 (-)
G1575977 NA other downstream 1735118 67203201 ~ 67203487 (-)
G1577996 LOC106589133 other upstream 316383 69312886 ~ 69315998 (-)
G1578111 NA other upstream 570681 69567184 ~ 69568164 (-)
G1578132 NA other upstream 607757 69604260 ~ 69606902 (-)
G1578107 NA other upstream 615000 69611503 ~ 69615183 (-)
cibar1 fam92a1 other upstream 826239 69784536 ~ 69826841 (-)

Expression


Co-expression Network