spag1a (LOC106589120)


Basic Information

Item Value
gene id spag1a
gene name LOC106589120
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69238043 ~ 69262807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953616.1
CACCAGATCTTCCATCCAGCTTAGACTAGGCTGCTGCTCTAGGGGGAGGAAAGCTTTGACACTGCAGCGTACAGAGATAATAATGGGGAATGCACAGGATAAGCCCTCTGGATCCGGGGGGGCTAAAACGGACCAGGCCACCCCAGGATTCAGGAGGAGAAGCAGAGCTGGGAGTACGGAGAAGCCCAAGGCAGGGAAGGGTCCCCCAGAGAAGGGGTCGATGGCCAACGGAGCCACCCAGGGGGACAGGAACCAGAGTAAGGACATCCCACCAGACACCAGCTATCTGGACGCCCCCGCTGGAGCTCTGCCACCCCACCTGGGCCGGCTCAAGAACGAGGGTAACCACCTCTTCAAAAAAGGACAGTTTGCAGATGCTGTGGAGAAATACTCTGCAGCCATCGATGGCTGCTGTGACGCAGGTATAGAGAGTGGAGAGGACCTGTGTATTCTCTACTCTAACAGAGCTGCTTGCTACCTGAAGGATGGGAGCAACACAGAGTGTATCCAGGACTGCACCAGGGCATTGGATATTCAGCCCTTCTCCCTGAAGCCCCTCCTCCGCAGGGCCACGGCCTATGAGTCAATGGAACGTTACCGACAGGCCTACGTGGATTTTAAGACTGTTCTGCAGATAGACATCGGGGTGCAGGCGGCACACGACAGTGTCCACAGGATCACCAAGCAGCTTATTGAGCAGGACGGCCCTGACTGGAGACAGAAGCTTCCGGAGATCCCTCTAGTCCCACTGTCAGCTCAGCAGCACCACAGGCAGAAAGACCCCAGCGCTGAGCTGGTCCAGGCTAGAGAAGcCAAAAAAGCAGAGGCTCGCTTTGCCTCTCTCAAAACAGAAGGAAATGAGCATGTGAGGAAAAGCCAGTTCCATGACGGTCTAGAAAAGTACAGTGAATGCCTTAAGATCAAACCTGACGAGTGTTCCTGCTTTACCAACAGAGCCATCTGTTATCTGAGACTGGGTTGTTTTGAAGAGGCCAGACAGGACTGTGACTCCGCCCTCAAGCTGGAACCAACCAATAAGAAGGCCTTCTATAGACGGGCGCTGGCGTTTAAAGGTTTACAGgACTACCTGTCTTCCAGCAGTGACCTCCAGGAGGTGTTACAGCTGGACCCCAACGTCCACGAGGCTGAACAGGAGCTGGAGACTGTGACAGGGCTGCTCAGACAGAGCCTCATGGACGGAGCCCAACTCACACCCAGGGTTTGATGGCAGAGATGAGACTGCCACAGGAGACTGTATAGGAGGCTGAtgaagagagagactgatggagaccTGGGAAGGCTGTTCAGGCCTCATCATCCCTCACAGAGTTGACATGAACTAAGGTGAACTATGCTGGATGTTGGGCTCTGACTCCATCTGCCTTCAAAGAGCATCATTAAAGCATTGCGTCAACGACGGCAGAGCGTTGTTCAATAATTCCCAGCAGGCAGCTGCATCCTTCATTTCCATTCTGGAGACTCTAAAGATACTTTAGATGCAATGCAGCTTCTTACAtttacatttgtcatttagcagatgctcttatccagagagacttacagtagtgagtcatttagcagactctcttatccagagagacttgcaGTTAGTGCATTCTTTACCTCAGCATGCTCAGACCCCCTACAGCAACACACTGTAGAGAAAGGGTGCGTCACAAATGATGCCCTACTCTCTATAAagtgcactatgtttgaccagggctcataggtctataatcaaatgtagtgcactatataggggataggggtgccatttgggactcagacccAACATCTTAAAAGCTAGGAGTGACTAGTTTTGCAGAAGTATTTGATTTCTTCCCACTAACAGCAGATTATGCAGACCGGCGGTATTACAGATTGGAGAAGCGATCGACAGAAGCTCTAGAAGCACACTGGAACACAATGTGGGAGAGATGTGGTGTGCCTTATTGAGATTCAAGTTGAACCATATATTTGGGAAGTGTAATCTGAACCTCAGAGAAATAACATCCTTGTATATATGTAATAAACTGCTGCTTTGATACACTGCAGAGTATTTTACATGTGGAAACCAAAAAATATGTTGCCACTGTATTGACAGTCATGCATGTACCTTTTCAACCTTTAAAGGGCACTGTTGGCTAATTAATGCATAATGAAAGATGGACAACTGTGTATATCATGTACTGTATGCTTTTAATCTCAGGTTCAGTCTTGAACATGACCATGATTGTATGGTAAATGTTAGCTCTGGTCCATGGCGTTAGAGGAATTGTAATggcctggaccagagctaggtaAATGTGTATAGTAGTCAAACACTGATCTGCTAGTTTTCAGATGTTGCTCTACTGCTTTATAAAATCCCCAAACCCCCTTCAGATAGTTATCTGTTGCGTTAGAGATCAACCCCCTTCAGATAGTTAGTTATCTGTTGAGTTAGAGATCAACTCCCTTCAGATAGTTATCTGTTGAGTTAGAGGTATTTCAGTTAGTGTCTGAAACTGATTAATAACAAGCTGCGTGTGTTGAATATATTGTGAATGTTCTGCTTTCACCACAGATTGGTCTATTTAGAACATAGACCCCTCTGAGGTGGTTGTTCATGATTAAACACGTCTGCTTTGTA
>XM_036953615.1
GACACCAGATCTTCCATCCAGCTTAGACTAGGCTGCTGCTCTAGGGGGAGGAAAGCTTTGACACTGCAGCGTACAGAGATAATAATGGGGAATGCACAGGATAAGCCCTCTGGATCCGGGGGGGCTAAAACGGACCAGGCCACCCCAGGATTCAGGAGGAGAAGCAGAGCTGGGAGTACGGAGAAGCCCAAGGCAGGGAAGGGTCCCCCAGAGAAGGGGTCGATGGCCAACGGAGCCACCCAGGGGGACAGGAACCAGAGTAAGGACATCCCACCAGACACCAGCTATCTGGACGCCCCCGCTGGAGCTCTGCCACCCCACCTGGGCCGGCTCAAGAACGAGGGTAACCACCTCTTCAAAAAAGGACAGTTTGCAGATGCTGTGGAGAAATACTCTGCAGCCATCGATGGCTGCTGTGACGCAGGTATAGAGAGTGGAGAGGACCTGTGTATTCTCTACTCTAACAGAGCTGCTTGCTACCTGAAGGATGGGAGCAACACAGAGTGTATCCAGGACTGCACCAGGGCATTGGATATTCAGCCCTTCTCCCTGAAGCCCCTCCTCCGCAGGGCCACGGCCTATGAGTCAATGGAACGTTACCGACAGGCCTACGTGGATTTTAAGACTGTTCTGCAGATAGACATCGGGGTGCAGGCGGCACACGACAGTGTCCACAGGATCACCAAGCAGCTTATTGAGCAGGACGGCCCTGACTGGAGACAGAAGCTTCCGGAGATCCCTCTAGTCCCACTGTCAGCTCAGCAGCACCACAGGCAGAAAGACCCCAGCGCTGAGCTGGTCCAGGCTAGAGAAGcCAAAAAAGCAGAGGCTCGCTTTGCCTCTCTCAAAACAGAAGGAAATGAGCATGTGAGGAAAAGCCAGTTCCATGACGGTCTAGAAAAGTACAGTGAATGCCTTAAGATCAAACCTGACGAGTGTTCCTGCTTTACCAACAGAGCCATCTGTTATCTGAGACTGGGTTGTTTTGAAGAGGCCAGACAGGACTGTGACTCCGCCCTCAAGCTGGAACCAACCAATAAGAAGGCCTTCTATAGACGGGCGCTGGCGTTTAAAGGTTTACAGgACTACCTGTCTTCCAGCAGTGACCTCCAGGAGGTGTTACAGCTGGACCCCAACGTCCACGAGGCTGAACAGGAGCTGGAGACTGTGACAGGGCTGCTCAGACAGAGCCTCATGGACGGAGCCCAACTCACACCCAGGGTAGATACCCAACACACACCCAGGGTTTGATGGCAGAGATGAGACTGCCACAGGAGACTGTATAGGAGGCTGAtgaagagagagactgatggagaccTGGGAAGGCTGTTCAGGCCTCATCATCCCTCACAGAGTTGACATGAACTAAGGTGAACTATGCTGGATGTTGGGCTCTGACTCCATCTGCCTTCAAAGAGCATCATTAAAGCATTGCGTCAACGACGGCAGAGCGTTGTTCAATAATTCCCAGCAGGCAGCTGCATCCTTCATTTCCATTCTGGAGACTCTAAAGATACTTTAGATGCAATGCAGCTTCTTACAtttacatttgtcatttagcagatgctcttatccagagagacttacagtagtgagtcatttagcagactctcttatccagagagacttgcaGTTAGTGCATTCTTTACCTCAGCATGCTCAGACCCCCTACAGCAACACACTGTAGAGAAAGGGTGCGTCACAAATGATGCCCTACTCTCTATAAagtgcactatgtttgaccagggctcataggtctataatcaaatgtagtgcactatataggggataggggtgccatttgggactcagacccAACATCTTAAAAGCTAGGAGTGACTAGTTTTGCAGAAGTATTTGATTTCTTCCCACTAACAGCAGATTATGCAGACCGGCGGTATTACAGATTGGAGAAGCGATCGACAGAAGCTCTAGAAGCACACTGGAACACAATGTGGGAGAGATGTGGTGTGCCTTATTGAGATTCAAGTTGAACCATATATTTGGGAAGTGTAATCTGAACCTCAGAGAAATAACATCCTTGTATATATGTAATAAACTGCTGCTTTGATACACTGCAGAGTATTTTACATGTGGAAACCAAAAAATATGTTGCCACTGTATTGACAGTCATGCATGTACCTTTTCAACCTTTAAAGGGCACTGTTGGCTAATTAATGCATAATGAAAGATGGACAACTGTGTATATCATGTACTGTATGCTTTTAATCTCAGGTTCAGTCTTGAACATGACCATGATTGTATGGTAAATGTTAGCTCTGGTCCATGGCGTTAGAGGAATTGTAATggcctggaccagagctaggtaAATGTGTATAGTAGTCAAACACTGATCTGCTAGTTTTCAGATGTTGCTCTACTGCTTTATAAAATCCCCAAACCCCCTTCAGATAGTTATCTGTTGCGTTAGAGATCAACCCCCTTCAGATAGTTAGTTATCTGTTGAGTTAGAGATCAACTCCCTTCAGATAGTTATCTGTTGAGTTAGAGGTATTTCAGTTAGTGTCTGAAACTGATTAATAACAAGCTGCGTGTGTTGAATATATTGTGAATGTTCTGCTTTCACCACAGATTGGTCTATTTAGAACATAGACCCCTCTGAGGTGGTTGTTCATGATTAAACACGTCTGCTTTGTA
>XR_005037545.1
GACACCAGATCTTCCATCCAGCTTAGACTAGGCTGCTGCTCTAGGGGGAGGAAAGCTTTGACACTGCAGCGTACAGAGATAATAATGGGGAATGCACAGGATAAGCCCTCTGGATCCGGGGGGGCTAAAACGGACCAGGCCACCCCAGGATTCAGGAGGAGAAGCAGAGCTGGGAGTACGGAGAAGCCCAAGGCAGGGAAGGGTCCCCCAGAGAAGGGGTCGATGGCCAACGGAGCCACCCAGGGGGACAGGAACCAGAGTAAGGACATCCCACCAGACACCAGCTATCTGGACGCCCCCGCTGGAGCTCTGCCACCCCACCTGGGCCGGCTCAAGAACGAGGGTAACCACCTCTTCAAAAAAGGACAGTTTGCAGATGCTGTGGAGAAATACTCTGCAGCCATCGATGGCTGCTGTGACGCAGGTATAGAGAGTGGAGAGGACCTGTGTATTCTCTACTCTAACAGAGCTGCTTGCTACCTGAAGGATGGGAGCAACACAGAGTGTATCCAGGACTGCACCAGGGCATTGGATATTCAGCCCTTCTCCCTGAAGCCCCTCCTCCGCAGGGCCACGGCCTATGAGTCAATGGAACGTTACCGACAGGCCTACGTGGATTTTAAGACTGTTCTGCAGATAGACATCGGGGTGCAGGCGGCACACGACAGTGTCCACAGGATCACCAAGCAGCTTATTGAGCAGGACGGCCCTGACTGGAGACAGAAGCTTCCGGAGATCCCTCTAGTCCCACTGTCAGCTCAGCAGCACCACAGGCAGAAAGACCCCAGCGCTGAGCTGGTCCAGGCTAGAGAAGcCAAAAAAGCAGAGGCTCGCTTTGCCTCTCTCAAAACAGAAGGAAATGAGCATGTGAGGAAAAGCCAGTTCCATGACGGTCTAGAAAAGTACAGTGAATGCCTTAAGATCAAACCTGACGAGTGTTCCTGCTTTACCAACAGAGCCATCTGTTATCTGAGACTGGGTTGTTTTGAAGAGGCCAGACAGGACTGTGACTCCGCCCTCAAGCTGGAACCAACCAATAAGAAGGCCTTCTATAGACGGGCGCTGGCGTTTAAAGGTTTACAGgACTACCTGTCTTCCAGCAGTGACCTCCAGGAGGTGTTACAGCTGGACCCCAACGTCCACGAGGCTGAACAGGAGCTGGAGACTGTGACAGGGCTGCTCAGACAGAGCCTCATGGACGGAGCCCAACTCACACCCAGGGTAGATACCCAACACACACCCAGGGTTTGATGGCAGAGATGAGACTGCCACAGGAGACTGTATAGGAGGCTGAtgaagagagagactgatggagaccTGGGAAGGCTGTTCAGGCCTCATCATCCCTCACAGAGTTGACATGAACTAAGATTATGCAGACCGGCGGTATTACAGATTGGAGAAGCGATCGACAGAAGCTCTAGAAGCACACTGGAACACAATGTGGGAGAGATGTGGTGTGCCTTATTGAGATTCAAGTTGAACCATATATTTGGGAAGTGTAATCTGAACCTCAGAGAAATAACATCCTTGTATATATGTAATAAACTGCTGCTTTGATACACTGCAGAGTATTTTACATGTGGAAACCAAAAAATATGTTGCCACTGTATTGACAGTCATGCATGTACCTTTTCAACCTTTAAAGGGCACTGTTGGCTAATTAATGCATAATGAAAGATGGACAACTGTGTATATCATGTACTGTATGCTTTTAATCTCAGGTTCAGTCTTGAACATGACCATGATTGTATGGTAAATGTTAGCTCTGGTCCATGGCGTTAGAGGAATTGTAATggcctggaccagagctaggtaAATGTGTATAGTAGTCAAACACTGATCTGCTAGTTTTCAGATGTTGCTCTACTGCTTTATAAAATCCCCAAACCCCCTTCAGATAGTTATCTGTTGCGTTAGAGATCAACCCCCTTCAGATAGTTAGTTATCTGTTGAGTTAGAGATCAACTCCCTTCAGATAGTTATCTGTTGAGTTAGAGGTATTTCAGTTAGTGTCTGAAACTGATTAATAACAAGCTGCGTGTGTTGAATATATTGTGAATGTTCTGCTTTCACCACAGATTGGTCTATTTAGAACATAGACCCCTCTGAGGTGGTTGTTCATGATTAAACACGTCTGCTTTGTA
>XM_036953617.1
CTGACACCAGATCTTCCATCCAGCTTAGACTAGGCTGCTGCTCTAGGGGGAGGAAAGCTTTGACACTGCAGCGTACAGAGATAATAATGGGGAATGCACAGGATAAGCCCTCTGGATCCGGGGGGGCTAAAACGGACCAGGCCACCCCAGGATTCAGGAGGAGAAGCAGAGCTGGGAGTACGGAGAAGCCCAAGGCAGGGAAGGGTCCCCCAGAGAAGGGGTCGATGGCCAACGGAGCCACCCAGGGGGACAGGAACCAGAGTAAGGACATCCCACCAGACACCAGCTATCTGGACGCCCCCGCTGGAGCTCTGCCACCCCACCTGGGCCGGCTCAAGAACGAGGGTAACCACCTCTTCAAAAAAGGACAGTTTGCAGATGCTGTGGAGAAATACTCTGCAGCCATCGATGGCTGCTGTGACGCAGGTATAGAGAGTGGAGAGGACCTGTGTATTCTCTACTCTAACAGAGCTGCTTGCTACCTGAAGGATGGGAGCAACACAGAGTGTATCCAGGACTGCACCAGGGCATTGGATATTCAGCCCTTCTCCCTGAAGCCCCTCCTCCGCAGGGCCACGGCCTATGAGTCAATGGAACGTTACCGACAGGCCTACGTGGATTTTAAGACTGTTCTGCAGATAGACATCGGGGTGCAGGCGGCACACGACAGTGTCCACAGGATCACCAAGCAGCTTATTGAGCAGGACGGCCCTGACTGGAGACAGAAGCTTCCGGAGATCCCTCTAGTCCCACTGTCAGCTCAGCAGCACCACAGGCAGAAAGACCCCAGCGCTGAGCTGGTCCAGGCTAGAGAAGcCAAAAAAGCAGAGGCTCGCTTTGCCTCTCTCAAAACAGAAGGAAATGAGCATGTGAGGAAAAGCCAGTTCCATGACGGTCTAGAAAAAGCCATCTGTTATCTGAGACTGGGTTGTTTTGAAGAGGCCAGACAGGACTGTGACTCCGCCCTCAAGCTGGAACCAACCAATAAGAAGGCCTTCTATAGACGGGCGCTGGCGTTTAAAGGTTTACAGgACTACCTGTCTTCCAGCAGTGACCTCCAGGAGGTGTTACAGCTGGACCCCAACGTCCACGAGGCTGAACAGGAGCTGGAGACTGTGACAGGGCTGCTCAGACAGAGCCTCATGGACGGAGCCCAACTCACACCCAGGGTAGATACCCAACACACACCCAGGGTTTGATGGCAGAGATGAGACTGCCACAGGAGACTGTATAGGAGGCTGAtgaagagagagactgatggagaccTGGGAAGGCTGTTCAGGCCTCATCATCCCTCACAGAGTTGACATGAACTAAGGTGAACTATGCTGGATGTTGGGCTCTGACTCCATCTGCCTTCAAAGAGCATCATTAAAGCATTGCGTCAACGACGGCAGAGCGTTGTTCAATAATTCCCAGCAGGCAGCTGCATCCTTCATTTCCATTCTGGAGACTCTAAAGATACTTTAGATGCAATGCAGCTTCTTACAtttacatttgtcatttagcagatgctcttatccagagagacttacagtagtgagtcatttagcagactctcttatccagagagacttgcaGTTAGTGCATTCTTTACCTCAGCATGCTCAGACCCCCTACAGCAACACACTGTAGAGAAAGGGTGCGTCACAAATGATGCCCTACTCTCTATAAagtgcactatgtttgaccagggctcataggtctataatcaaatgtagtgcactatataggggataggggtgccatttgggactcagacccAACATCTTAAAAGCTAGGAGTGACTAGTTTTGCAGAAGTATTTGATTTCTTCCCACTAACAGCAGATTATGCAGACCGGCGGTATTACAGATTGGAGAAGCGATCGACAGAAGCTCTAGAAGCACACTGGAACACAATGTGGGAGAGATGTGGTGTGCCTTATTGAGATTCAAGTTGAACCATATATTTGGGAAGTGTAATCTGAACCTCAGAGAAATAACATCCTTGTATATATGTAATAAACTGCTGCTTTGATACACTGCAGAGTATTTTACATGTGGAAACCAAAAAATATGTTGCCACTGTATTGACAGTCATGCATGTACCTTTTCAACCTTTAAAGGGCACTGTTGGCTAATTAATGCATAATGAAAGATGGACAACTGTGTATATCATGTACTGTATGCTTTTAATCTCAGGTTCAGTCTTGAACATGACCATGATTGTATGGTAAATGTTAGCTCTGGTCCATGGCGTTAGAGGAATTGTAATggcctggaccagagctaggtaAATGTGTATAGTAGTCAAACACTGATCTGCTAGTTTTCAGATGTTGCTCTACTGCTTTATAAAATCCCCAAACCCCCTTCAGATAGTTATCTGTTGCGTTAGAGATCAACCCCCTTCAGATAGTTAGTTATCTGTTGAGTTAGAGATCAACTCCCTTCAGATAGTTATCTGTTGAGTTAGAGGTATTTCAGTTAGTGTCTGAAACTGATTAATAACAAGCTGCGTGTGTTGAATATATTGTGAATGTTCTGCTTTCACCACAGATTGGTCTATTTAGAACATAGACCCCTCTGAGGTGGTTGTTCATGATTAAACACGTCTGCTTTGTA

Function

NR:

description
PREDICTED: sperm-associated antigen 1A-like

GO: NA

KEGG:

id description
K19870 SPAG1; sperm-associated antigen 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953616.1 False 2632 mRNA 0.48 8 69238043 69262803
XM_036953615.1 False 2658 mRNA 0.48 8 69238043 69262805
XR_005037545.1 False 2147 mRNA 0.49 9 69238043 69262805
XM_036953617.1 True 2606 mRNA 0.48 8 69238043 69262807

Neighbor

gene id symbol gene type direction distance location
myclb LOC106593562 coding downstream 227339 68997269 ~ 69010704 (-)
trit1 LOC106594867 coding downstream 241540 68938605 ~ 68996503 (-)
hpcal4 LOC106570705 coding downstream 538935 68626876 ~ 68699108 (-)
LOC118941211 NA coding downstream 613416 68622013 ~ 68626119 (-)
nt5c1aa LOC106589086 coding downstream 635769 68542299 ~ 68602274 (-)
LOC110496771 NA coding upstream 5103 69267835 ~ 69269425 (-)
LOC110496775 LOC106589130 coding upstream 70807 69333614 ~ 69377896 (-)
LOC110496768 LOC106589124 coding upstream 450240 69713047 ~ 69726728 (-)
cibar1 fam92a1 coding upstream 521729 69784536 ~ 69826841 (-)
lrrc69 lrrc69 coding upstream 1196168 70458965 ~ 70490901 (-)
G1577887 NA non-coding downstream 54516 69153944 ~ 69183527 (-)
G1577884 NA non-coding downstream 63387 69137181 ~ 69174656 (-)
G1577890 NA non-coding downstream 77222 69149203 ~ 69160821 (-)
G1577934 NA non-coding downstream 77432 69153479 ~ 69160611 (-)
G1577888 NA non-coding downstream 78527 69144059 ~ 69159516 (-)
G1577972 NA non-coding upstream 9439 69272246 ~ 69272769 (-)
G1577988 NA non-coding upstream 40985 69303792 ~ 69305421 (-)
G1577996 LOC106589133 non-coding upstream 50079 69312886 ~ 69315998 (-)
G1578002 NA non-coding upstream 59752 69322559 ~ 69446343 (-)
G1577745 NA other downstream 450357 68748612 ~ 68787686 (-)
G1576491 NA other downstream 1282831 67915188 ~ 67955212 (-)
G1576222 NA other downstream 1796067 67401448 ~ 67441976 (-)
G1575977 NA other downstream 2034556 67203201 ~ 67203487 (-)
G1578111 NA other upstream 304377 69567184 ~ 69568164 (-)
G1578132 NA other upstream 341453 69604260 ~ 69606902 (-)
G1578107 NA other upstream 348696 69611503 ~ 69615183 (-)

Expression

spag1a(LOC106589120) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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spag1a(LOC106589120) Expression in each Bioproject

Bar chart with 19 bars.
spag1a(LOC106589120) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
End of interactive chart.

Co-expression Network