si:ch211-215i13.3 (LOC106589127)


Basic Information

Item Value
gene id si:ch211-215i13.3
gene name LOC106589127
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69360411 ~ 69374917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572811.2
gatggaAACAAATTTGTTCACTAAATTTGAGGgtaacacgttttttttttttgcgtttgaccaatttctgggatcttttatttctgctcatgaaacatgggaccaacactttacatgattagtttgtatttttgttaagtataattttagtgtcctggatttacgtttactatgttacgtctggTTTATGAGACAAGGCTGGGATAGCACTAACCATTGTGTGAGCTATGCGATGCTGCAAAGCGCACCGTGCGTAGATCAGCAAAGCGCAGAATCTTCGCAGTGGATGGAGGCAAACGGAGTAACGAAAGATGCTTTAGCCTAGATGAATCTAACGGGCATTTCGTGGACAGCTGTGTGTCAGTAAAAATTGACACTTTGAAGCGAGCGGTGCAGTGGATGATATTCTGATGGGTTGTGGAGGAAGCCGGTCCGACACAATAATCGAACCGAGGTATCATGAAAGCTGGACCCGAGAAACCGAGTCGACATGGCTCACCAATACAGACGCCGAGGCTGCTCTTTCTACTATCAACAGTAAAGGGCTGGAGGGTATtcagaaggagaagaggatgatGGTGACCACAGGGACCCAGTGTGGGAAGCAGACCCTCACCAGCTCTGGACCCAACCACTGGCGGTCCTGCCACGATATAGGCCTCACTCAAACAAAAAAGGAGTCCAGAAGGAGAGCATCTAAGGAGGTGCCTGCTCCGTCTAAAGCGGTCCAGTCTGTCAGTGGCAGTGGGGACACCGTCCCACTCAGTCAGGCCGGTGATGAAAGgacagaataatggtccaattcacacacttatcaagagaacatccctggtca
>TU1805061
GCAAAGCGCACCGTGCGTAGATCAGCAAAGCGCAGAATCTTCGCAGTGGATGGAGGCAAACGGAGTAACGAAAGATGCTTTAGCCTAGATGAATCTAACGGGCATTTCGTGGACAGCTGTGTGTCAGTAAAAATTGACACTTTGAAGCGAGCGGTGCAGTGGATGATATTCTGATGGGTTGTGGAGGAAGCCGGTCCGACACAATAATCGAACCGAGGTATCATGAAAGCTGGACCCGAGAAACCGAGTCGACATGGCTCACCAATACAGACGCCGAGGCTGCTCTTTCTACTATCAACAGTAAAGGGCTGGAGGGTATtcagaaggagaagaggatgatGGTGACCACAGGGACCCAGTGTGGGAAGCAGACCCTCACCAGCTCTGGACCCAACCACTGGCGGTCCTGCCACGATATAGGCCTCACTCAAACAAAAAAGGAGTCCAGAAGGAGAGCATCTAAGGAGGTGCCTGCTCCGTCTAAAGCGGTCCAGTCTGTCAGTGGCAGTGGGGACACCGTCCCACTCAGTCAGGCCGGTGATGAAAGgacagaataatggtccaattcacacacttatcaagagaacatccctggtcatccctactgcctctgatctggacactaaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgtctctgatctggaggactcactaaacagagaacatccctggtcatctctactgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgtctctgatctggaggactcactaaacacacatgcataGTTTGTAAATTACTTCTGAGTGTTAACGTGTGCCCCTGGCtac

Function

NR:

description
brain and acute leukemia cytoplasmic protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572811.2 False 835 mRNA 0.47 4 69360411 69374409
TU1805061 True 1106 TUCP 0.51 4 69360648 69374917

Neighbor

gene id symbol gene type direction distance location
LOC110496774 LOC106589133 coding upstream 44402 69312656 ~ 69316009 (+)
LOC110496773 stk3 coding upstream 67516 69270957 ~ 69292895 (+)
mfsd2ab LOC106570727 coding upstream 230355 69078422 ~ 69130056 (+)
LOC110496750 LOC105006285 coding upstream 471471 68787320 ~ 68888940 (+)
LOC118941011 NA coding upstream 869707 68437422 ~ 68490704 (+)
LOC110496778 LOC106589129 coding downstream 873 69375282 ~ 69479640 (+)
LOC110496907 LOC106589122 coding downstream 144818 69519227 ~ 69613542 (+)
LOC110496767 LOC106589121 coding downstream 248553 69622962 ~ 69625389 (+)
LOC118941012 NA coding downstream 584651 69959060 ~ 69963271 (+)
LOC110519153 runx1t1 coding downstream 817852 70192261 ~ 70385585 (+)
G1577483 NA non-coding upstream 110255 69248725 ~ 69250156 (+)
G1577475 NA non-coding upstream 120972 69238065 ~ 69239439 (+)
G1577468 NA non-coding upstream 130900 69218934 ~ 69229511 (+)
G1577416 NA non-coding upstream 187094 69164935 ~ 69173317 (+)
G1577415 NA non-coding upstream 215845 69134156 ~ 69144566 (+)
G1577413 NA non-coding downstream 115887 69490296 ~ 69509258 (+)
G1577586 NA non-coding downstream 134892 69509301 ~ 69514297 (+)
G1577589 NA non-coding downstream 141813 69516222 ~ 69516887 (+)
G1577595 NA non-coding downstream 157602 69532011 ~ 69532455 (+)
G1577573 NA non-coding downstream 163193 69537602 ~ 69538893 (+)
G1577314 NA other upstream 584149 68768387 ~ 68776262 (+)
G1576816 NA other upstream 881743 68478073 ~ 68478668 (+)
hdac1 LOC106570688 other upstream 1717354 67636353 ~ 67660955 (+)
G1576081 NA other upstream 2019976 67339520 ~ 67340435 (+)
G1577567 NA other downstream 240870 69615279 ~ 69616967 (+)
G1577699 NA other downstream 388304 69762713 ~ 69764253 (+)
G1578630 NA other downstream 1044450 70418859 ~ 70419273 (+)
G1579579 NA other downstream 2763748 72138157 ~ 72138592 (+)

Expression


Co-expression Network