cibar1 (fam92a1)


Basic Information

Item Value
gene id cibar1
gene name fam92a1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69784536 ~ 69826841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572804.2
CGTGGGTGCCTCCATTTCCCATCATACTCTACCGGAAAGAATCATCTCCATGGAAACGGCTCCCGGACGTGAAGCTTGCTAGCTTATTACACGAGCAAATCAATCCCACTCAcccgttagctagctaacgttacctaacTGCTGGATCAGAAGCTTATCTGCATCGTAGCATTGTTTTATACCGGATCGCATTACCACTTTTTACTCTGCAGTTATGAGCCGGACTCCGGATGCAAGGGCAAGAGACAGCCAGACCAGACAGATCCAGGAGAACATCACCAACACGGAGAAGCACTTTGGAGAGATGTGCCAACTGTTCGCCGCCTACGTGCGTAAAACGGCGAGGTTACGGGACAAGGCAGACCTACTGGTCAGAGAGATCAGCATCTATGCGGAGACAGAAACGCCAAATCTGCAGAGGGGTATGAAACAGTTTGCAGACAACCTTGCCAAAGTTCAGGATTATCGTCAAGCAGAGGTGGAGAGGCTTGAAGCCAAAGTGGTAGAGCCTTTGAAAAGCTATGGAAGTGTTGTTAAACTTAAAAGGGAGGACCTGAAGACCAGTCAGAGTGCCAGGAACAGGGAGTCTAAACAGATGCAGCAGctggagagaatgagacagagaaacCCCTCTGACAGACAGATCATTTCCCAGGCTGAAAGCGACCTGCAGAGAGCCACGATGGACGCCACGCGCACGACACGACAACTGGAGGAGACAATAGACGCGTTTGAAAAGCAGAAAATACAAGATATCAAGaaGATCTTTGGGGAGTTTTTGACGGTGGAGATGTCGTTCCATGCTAAGGCGTTGGAGGCGTACACCACAGCTTACCAGAGCATACACAACGTAGACGAAGAGggggatctggagCAATCACTGACCCCGAGCAGACAGaggcgagaggaggaggagggagatgacgAAGATGTGGATGATGAAGAGGAAGATGATGATCTTGAAGAAGTCACAGATGATGAATGAATTGGAAATCTGTTTTGATTAGTATCTTTTCATTTGTGATGGGAGGACGTTTTCTAGAAAATATTGTGTTCTTTATGGCCATGAAATGATGTCCTAAACAAGGGCCATaaggggcccatagggctctggtcaaaagtaagtgcactatatagggaatagggtgccacttgtgGACACAGAAATAATATTCACGTAAAGTGTTTTTAACCCAGCAGTTGTACATGGTCGTTATAATTTCCAATTCTGGAGCTGAAATAATTGCTATGTTATTTGTTTAACTATTTCATTGACCAAAGGGATGGTGGGATATCAATGTCTTTGTCATGTGGCAGTATTAATGTCTACTTGTATTTGTACATAGCAAAGTGCCAAATCTGTATTTGTTTTGTGTGGCAATGTTGCCTTTATTGTATAAACTTTCCAGAATAGAAAAACTGTTGTTTTTATGGAATAAACTCTTGCCAGTGGACTCAACAATGGAA
>XM_021572802.2
CTCGTGGGTGCCTCCATTTCCCATCATACTCTACCGGAAAGAATCATCTCCATGGAAACGGCTCCCGGACGTGAAGCTTGCTAGCTTATTACACGAGCAAATCAATCCCACTCAcccgttagctagctaacgttacctaacTGCTGGATCAGAAGCTTATCTGCATCGTAGCATTGTTTTATACCGGATCGCATTACCACTTTTTACTCTGCAGTTATGAGCCGGACTCCGGATGCAAGGGCAAGAGACAGCCAGACCAGACAGATCCAGGAGAACATCACCAACACGGAGAAGCACTTTGGAGAGATGTGCCAACTGTTCGCCGCCTACGTGCGTAAAACGGCGAGGTTACGGGACAAGGCAGACCTACTGGTCAGAGAGATCAGCATCTATGCGGAGACAGAAACGCCAAATCTGCAGAGGGGTATGAAACAGTTTGCAGACAACCTTGCCAAAGTTCAGGATTATCGTCAAGCAGAGGTGGAGAGGCTTGAAGCCAAAGTGGTAGAGCCTTTGAAAAGCTATGGAAGTGTTGTTAAACTTAAAAGGGAGGACCTGAAGACCAGTCAGAGTGCCAGGAACAGGGAGTCTAAACAGATGCAGCAGctggagagaatgagacagagaaacCCCTCTGACAGACAGATCATTTCCCAGGCTGAAAGCGACCTGCAGAGAGCCACGATGGACGCCACGCGCACGACACGACAACTGGAGGAGACAATAGACGCGTTTGAAAAGCAGAAAATACAAGATATCAAGaaGATCTTTGGGGAGTTTTTGACGGTGGAGATGTCGTTCCATGCTAAGGCGTTGGAGGCGTACACCACAGCTTACCAGAGCATACACAACGTAGACGAAGAGggggatctggagGTATTCAGGAGCTTGCTGCACCCCCCTGACTACCAGTCTCGCTTAGAAATAGTGCGTGCTAATTCCAAAACATCACTCAATCTGACTGCGTCTACCCTGAGTAAAACGGGGACCTTACAGCAATCACTGACCCCGAGCAGACAGaggcgagaggaggaggagggagatgacgAAGATGTGGATGATGAAGAGGAAGATGATGATCTTGAAGAAGTCACAGATGATGAATGAATTGGAAATCTGTTTTGATTAGTATCTTTTCATTTGTGATGGGAGGACGTTTTCTAGAAAATATTGTGTTCTTTATGGCCATGAAATGATGTCCTAAACAAGGGCCATaaggggcccatagggctctggtcaaaagtaagtgcactatatagggaatagggtgccacttgtgGACACAGAAATAATATTCACGTAAAGTGTTTTTAACCCAGCAGTTGTACATGGTCGTTATAATTTCCAATTCTGGAGCTGAAATAATTGCTATGTTATTTGTTTAACTATTTCATTGACCAAAGGGATGGTGGGATATCAATGTCTTTGTCATGTGGCAGTATTAATGTCTACTTGTATTTGTACATAGCAAAGTGCCAAATCTGTATTTGTTTTGTGTGGCAATGTTGCCTTTATTGTATAAACTTTCCAGAATAGAAAAACTGTTGTTTTTATGGAATAAACTCTTGCCAGTGGACTCAACAATGGAA
>XM_021572805.2
CTCGTGGGTGCCTCCATTTCCCATCATACTCTACCGGAAAGAATCATCTCCATGGAAACGGCTCCCGGACGTGAAGCTTGCTAGCTTATTACACGAGCAAATCAATCCCACTCAcccgttagctagctaacgttacctaacTGCTGGATCAGAAGCTTATCTGCATCGTAGCATTGTTTTATACCGGATCGCATTACCACTTTTTACTCTGCAGTTATGAGCCGGACTCCGGATGCAAGGGCAAGAGACAGCCAGACCAGACAGATCCAGGAGAACATCACCAACACGGAGAAGCACTTTGGAGAGATGTGCCAACTGTTCGCCGCCTACGTGCGTAAAACGGCGAGGTTACGGGACAAGGCAGACCTACTGGTCAGAGAGATCAGCATCTATGCGGAGACAGAAACGCCAAATCTGCAGAGGGGTATGAAACAGTTTGCAGACAACCTTGCCAAAGTTCAGGATTATCGTCAAGCAGAGGTGGAGAGGCTTGAAGCCAAAGTGGTAGAGCCTTTGAAAAGCTATGGAAGTGTTGTTAAACTTAAAAGGGAGGACCTGAAGACCAGTCAGAGTGCCAGGAACAGGGAGTCTAAACAGATGCAGCAGctggagagaatgagacagagaaacCCCTCTGACAGACAGATCATTTCCCAGGCTGAAAGCGACCTGCAGAGAGCCACGATGGACGCCACGCGCACGACACGACAACTGGAGGAGACAATAGACGCGTTTGAAAAGCAGAAAATACAAGATATCAAGATCTTTGGGGAGTTTTTGACGGTGGAGATGTCGTTCCATGCTAAGGCGTTGGAGGCGTACACCACAGCTTACCAGAGCATACACAACGTAGACGAAGAGggggatctggagCAATCACTGACCCCGAGCAGACAGaggcgagaggaggaggagggagatgacgAAGATGTGGATGATGAAGAGGAAGATGATGATCTTGAAGAAGTCACAGATGATGAATGAATTGGAAATCTGTTTTGATTAGTATCTTTTCATTTGTGATGGGAGGACGTTTTCTAGAAAATATTGTGTTCTTTATGGCCATGAAATGATGTCCTAAACAAGGGCCATaaggggcccatagggctctggtcaaaagtaagtgcactatatagggaatagggtgccacttgtgGACACAGAAATAATATTCACGTAAAGTGTTTTTAACCCAGCAGTTGTACATGGTCGTTATAATTTCCAATTCTGGAGCTGAAATAATTGCTATGTTATTTGTTTAACTATTTCATTGACCAAAGGGATGGTGGGATATCAATGTCTTTGTCATGTGGCAGTATTAATGTCTACTTGTATTTGTACATAGCAAAGTGCCAAATCTGTATTTGTTTTGTGTGGCAATGTTGCCTTTATTGTATAAACTTTCCAGAATAGAAAAACTGTTGTTTTTATGGAATAAACTCTTGCCAGTGGACTCAACAATGGAA
>XM_021572803.2
CCTCGTGGGTGCCTCCATTTCCCATCATACTCTACCGGAAAGAATCATCTCCATGGAAACGGCTCCCGGACGTGAAGCTTGCTAGCTTATTACACGAGCAAATCAATCCCACTCAcccgttagctagctaacgttacctaacTGCTGGATCAGAAGCTTATCTGCATCGTAGCATTGTTTTATACCGGATCGCATTACCACTTTTTACTCTGCAGTTATGAGCCGGACTCCGGATGCAAGGGCAAGAGACAGCCAGACCAGACAGATCCAGGAGAACATCACCAACACGGAGAAGCACTTTGGAGAGATGTGCCAACTGTTCGCCGCCTACGTGCGTAAAACGGCGAGGTTACGGGACAAGGCAGACCTACTGGTCAGAGAGATCAGCATCTATGCGGAGACAGAAACGCCAAATCTGCAGAGGGGTATGAAACAGTTTGCAGACAACCTTGCCAAAGTTCAGGATTATCGTCAAGCAGAGGTGGAGAGGCTTGAAGCCAAAGTGGTAGAGCCTTTGAAAAGCTATGGAAGTGTTGTTAAACTTAAAAGGGAGGACCTGAAGACCAGTCAGAGTGCCAGGAACAGGGAGTCTAAACAGATGCAGCAGctggagagaatgagacagagaaacCCCTCTGACAGACAGATCATTTCCCAGGCTGAAAGCGACCTGCAGAGAGCCACGATGGACGCCACGCGCACGACACGACAACTGGAGGAGACAATAGACGCGTTTGAAAAGCAGAAAATACAAGATATCAAGATCTTTGGGGAGTTTTTGACGGTGGAGATGTCGTTCCATGCTAAGGCGTTGGAGGCGTACACCACAGCTTACCAGAGCATACACAACGTAGACGAAGAGggggatctggagGTATTCAGGAGCTTGCTGCACCCCCCTGACTACCAGTCTCGCTTAGAAATAGTGCGTGCTAATTCCAAAACATCACTCAATCTGACTGCGTCTACCCTGAGTAAAACGGGGACCTTACAGCAATCACTGACCCCGAGCAGACAGaggcgagaggaggaggagggagatgacgAAGATGTGGATGATGAAGAGGAAGATGATGATCTTGAAGAAGTCACAGATGATGAATGAATTGGAAATCTGTTTTGATTAGTATCTTTTCATTTGTGATGGGAGGACGTTTTCTAGAAAATATTGTGTTCTTTATGGCCATGAAATGATGTCCTAAACAAGGGCCATaaggggcccatagggctctggtcaaaagtaagtgcactatatagggaatagggtgccacttgtgGACACAGAAATAATATTCACGTAAAGTGTTTTTAACCCAGCAGTTGTACATGGTCGTTATAATTTCCAATTCTGGAGCTGAAATAATTGCTATGTTATTTGTTTAACTATTTCATTGACCAAAGGGATGGTGGGATATCAATGTCTTTGTCATGTGGCAGTATTAATGTCTACTTGTATTTGTACATAGCAAAGTGCCAAATCTGTATTTGTTTTGTGTGGCAATGTTGCCTTTATTGTATAAACTTTCCAGAATAGAAAAACTGTTGTTTTTATGGAATAAACTCTTGCCAGTGGACTCAACAATGGAA
>TU1806069
CTTATTACACGAGCAAATCAATCCCACTCAcccgttagctagctaacgttacctaacTGCTGGATCAGAAGCTTATCTGCATCGTAGCATTGTTTTATACCGGATCGCATTACCACTTTTTACTCTGCAGTTATGAGCCGGACTCCGGATGCAAGGGCAAGAGACAGCCAGACCAGACAGATCCAGGAGAACATCACCAACACGGAGAAGCACTTTGGAGAGATGTGCCAACTGTTCGCCGCCTACGTGCGTAAAACGGCGAGGTTACGGGACAAGGCAGACCTACTGGTCAGAGAGATCAGCATCTATGCGGAGACAGAAACGCCAAATCTGCAGAGGGGTATGAAACAGTTTGCAGACAACCTTGCCAAAGTTCAGGATTATCGTCAAGCAGAGGTGGAGAGGCTTGAAGCCAAAGTGGTAGAGCCTTTGAAAAGCTATGGAAGTGTTGTTAAACTTAAAAGGGAGGACCTGAAGACCAGTCAGAGTGCCAGGAACAGGGAGTCTAAACAGATGCAGCAGctggagagaatgagacagagaaacCCCTCTGACAGACAGATCATTGTATCCTTATTGCTCTCTCACCTATCAGCCCTTTACACCAATCATGTTTT

Function

NR:

description
protein FAM92A isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572804.2 False 1467 mRNA 0.45 8 69784536 69826838
XM_021572802.2 False 1589 mRNA 0.46 9 69784536 69826840
XM_021572805.2 False 1466 mRNA 0.45 8 69784536 69826840
XM_021572803.2 False 1587 mRNA 0.46 9 69784536 69826841
TU1806069 True 617 TUCP 0.48 4 69822742 69826756

Neighbor

gene id symbol gene type direction distance location
LOC110496768 LOC106589124 coding downstream 57808 69713047 ~ 69726728 (-)
LOC110496775 LOC106589130 coding downstream 432186 69333614 ~ 69377896 (-)
LOC110496771 NA coding downstream 515111 69267835 ~ 69269425 (-)
spag1a LOC106589120 coding downstream 521729 69238043 ~ 69262807 (-)
myclb LOC106593562 coding downstream 773832 68997269 ~ 69010704 (-)
lrrc69 lrrc69 coding upstream 632134 70458965 ~ 70490901 (-)
LOC118941214 necab1 coding upstream 743788 70568365 ~ 70627332 (-)
LOC118941013 necab1 coding upstream 819102 70645943 ~ 70718404 (-)
LOC118941215 NA coding upstream 907541 70733633 ~ 70735514 (-)
LOC110496779 LOC106589151 coding upstream 949877 70776718 ~ 70789671 (-)
G1578216 NA non-coding downstream 26250 69757991 ~ 69758286 (-)
G1578213 NA non-coding downstream 28599 69755537 ~ 69755937 (-)
G1578211 NA non-coding downstream 30213 69754123 ~ 69754323 (-)
G1578202 NA non-coding downstream 41237 69743049 ~ 69743299 (-)
G1578191 NA non-coding downstream 53044 69730958 ~ 69731492 (-)
G1578244 NA non-coding upstream 22674 69849515 ~ 69850080 (-)
G1578259 NA non-coding upstream 44952 69871793 ~ 69872006 (-)
G1578263 NA non-coding upstream 47739 69874580 ~ 69874857 (-)
G1578264 LOC107756720 non-coding upstream 50245 69877086 ~ 69877309 (-)
G1578281 NA non-coding upstream 100869 69927710 ~ 69928018 (-)
G1578107 NA other downstream 169353 69611503 ~ 69615183 (-)
G1578132 NA other downstream 177634 69604260 ~ 69606902 (-)
G1578111 NA other downstream 216372 69567184 ~ 69568164 (-)
G1577996 LOC106589133 other downstream 469529 69312886 ~ 69315998 (-)
G1577745 NA other downstream 996850 68748612 ~ 68787686 (-)
G1578414 NA other upstream 258532 70085373 ~ 70085792 (-)
G1578607 NA other upstream 557994 70384835 ~ 70387475 (-)
G1578765 NA other upstream 599379 70426220 ~ 70426577 (-)
G1578949 NA other upstream 927318 70754159 ~ 70756675 (-)
G1578233 NA non-coding downstream 701 69821405 ~ 69822041 (-)
G1578231 NA non-coding downstream 9534 69808981 ~ 69813208 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014917 fam92a1 coding NC_007130.7 CM002903.2 33258572 ~ 33275035 (-)