LOC110515436 (LOC106570762)


Basic Information

Item Value
gene id LOC110515436
gene name LOC106570762
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 70857223 ~ 70952795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953649.1
AAACCTACCGTGGAGTAATTGAAGAGAGCTTGACAACTCCAAGAAGAGAAACATACTGTGGAGTAATTGAAGAGAGCTTGCGCCTGATGGAATGAGAAGAGACTGAAGACACACAAAGAAACTAAAAGAGAAagtcaaggagagagagagaaagagagacccttCTGGTTAATCGAATCAAGATAAGACTCTTTCGGTGTTCTTCTCTGCTCTGCCAAGCGTGACaaccctccatctcccctctccacctcccctcacccttctccctctcctccccctgtcctcatCTCACCTGAGATGGGCCGGCTGCTGGCCCTGGTCTACCTGGTGCACCTGTCGACTGCAGTGATTGGCTCAGAGAAGCAGCAGCACCGGGTGCAGCATGGACCCTGCAGTTACACCTTCATTCTCCCCGAGGTGGAACACTGCCAGCCCCTCAAAGACTTCCAGGTCACCAACTCCGTCCAGAGGGACTCCCCACCACCGCCACTCCCAGACCCAGGATCGAGTCACCCTGAGCAGGTCAAAGCCCAGCCCGCTAGGTCCTCATGGCAGGAGAGGAAGCTGGAGAGTCTGGAGAGCTCCACAGAGAATAATACACAATGGTTGCAGAAGCTGGAGAGGTCCATCCAGGAAAACCTGCATTCTGCGATGGAGGAGATGAAGAGGAACGCTGTTCACACCCAGACGGCGGCCATGTTGGAGATCGGGACCAACCTCCTCAGCAAATCAGCTGAGCAGACCCTCAAACTGACAGATGTGGAGACCAAGGTGCTGAACCAGACCAGTAGAATGGAGATCCAGCTGTTAGAGTATTCTCTGTTCACTAACCGTCTAGAGAAACACGTCCTCCAGCAGAATCAGGAGATCTCACGACTCAATGATAAAAGCAGTTCGCTAGAGCAAAGGTTCTCAGCTTTAGAGGCCAGGCACGTTAAGGAGCTTCAGGATCTTCAGAGGGAGAAACAGCAGTTGCAGGACATGCTGGAGAGACAGAGGCGGCTGGTCACCCAGCTAAATGGAGAGCTGGGGACCTCAACACACAACAGCACACTACTGCAGAAACAGCAGGCTATACTGACTGACACAGTGCAGCAGTTGCTAGCCATGGTCACCCACTGCAACGATATACCCACTACACCCAAAGAGGAGCCAGTGATCTACAGAAACTGTGCTGAAATCTTCAGATCTGGGCTCACAGAGAATGGTGTCCACAGCATACGACCCCCTAACTCTACCCGCACAGttaagGTGTTCTGTGATATGAAGACAAGAGGTGGAGGCTGGACCGTGCTGCAGCATCGTAGAGACGGAGCCGTGGATTTCCACCGTGGATGGAGGGAttacaagatgGGTTTTGGGGATCCCTCGGGAGAGTACTGGGCAGGAAATGACCTCATACACCTGCTGACCAGCTCCCAAGAGTACAGTCTCCAGGTGCAGCTGAAGGATGCTGAGGGGAACGAAGCTTACTCCCACTATAATCACTTCTACATAGACGCAGAGAACAAAAACTACAGTCTCCATGCCCAGGGGTTCAGTGGTACCGCCGGCCGCACCAGTAGTCTGACCCAGCCTGGGACCCAGTTCAGCACCAAGGACCGAGACAACGACCGCTGTTCCTGCAAGTGTGCCCAGATGTCTTCTGGAGGTTGGTGGTTTGAGGCTTGTAGTCCcgctgccccctctctctcttcctgacccCCGACCTTTCCCCTCTCCACTAGGTTGGGGGTTTGAGGCGTCTGGTccatctgccctctctctctctcttcctgacccctgacctctcccctctccactagGTTGGTGGTTTGAGGTGTGTAGTCCCGCtg
>XM_036953648.1
AAACCTACCGTGGAGTAATTGAAGAGAGCTTGACAACTCCAAGAAGAGAAACATACTGTGGAGTAATTGAAGAGAGCTTGCGCCTGATGGAATGAGAAGAGACTGAAGACACACAAAGAAACTAAAAGAGAAagtcaaggagagagagagaaagagagacccttCTGGTTAATCGAATCAAGATAAGACTCTTTCGGTGTTCTTCTCTGCTCTGCCAAGCGTGACaaccctccatctcccctctccacctcccctcacccttctccctctcctccccctgtcctcatCTCACCTGAGATGGGCCGGCTGCTGGCCCTGGTCTACCTGGTGCACCTGTCGACTGCAGTGATTGGCTCAGAGAAGCAGCAGCACCGGGTGCAGCATGGACCCTGCAGTTACACCTTCATTCTCCCCGAGGTGGAACACTGCCAGCCCCTCAAAGACTTCCAGGTCACCAACTCCGTCCAGAGGGACTCCCCACCACCGCCACTCCCAGACCCAGGATCGAGTCACCCTGAGCAGGTCAAAGCCCAGCCCGCTAGGTCCTCATGGCAGGAGAGGAAGCTGGAGAGTCTGGAGAGCTCCACAGAGAATAATACACAATGGTTGCAGAAGCTGGAGAGGTCCATCCAGGAAAACCTGCATTCTGCGATGGAGGAGATGAAGAGGAACGCTGTTCACACCCAGACGGCGGCCATGTTGGAGATCGGGACCAACCTCCTCAGCAAATCAGCTGAGCAGACCCTCAAACTGACAGATGTGGAGACCAAGGTGCTGAACCAGACCAGTAGAATGGAGATCCAGCTGTTAGAGTATTCTCTGTTCACTAACCGTCTAGAGAAACACGTCCTCCAGCAGAATCAGGAGATCTCACGACTCAATGATAAAAGCAGTTCGCTAGAGCAAAGGTTCTCAGCTTTAGAGGCCAGGCACGTTAAGGAGCTTCAGGATCTTCAGAGGGAGAAACAGCAGTTGCAGGACATGCTGGAGAGACAGAGGCGGCTGGTCACCCAGCTAAATGGAGAGCTGGGGACCTCAACACACAACAGCACACTACTGCAGAAACAGCAGGCTATACTGACTGACACAGTGCAGCAGTTGCTAGCCATGGTCACCCACTGCAACGATATACCCACTACACCCAAAGAGGAGCCAGTGATCTACAGAAACTGTGCTGAAATCTTCAGATCTGGGCTCACAGAGAATGGTGTCCACAGCATACGACCCCCTAACTCTACCCGCACAGttaagGTGTTCTGTGATATGAAGACAAGAGGTGGAGGCTGGACCGTGCTGCAGCATCGTAGAGACGGAGCCGTGGATTTCCACCGTGGATGGAGGGAttacaagatgGGTTTTGGGGATCCCTCGGGAGAGTACTGGGCAGGAAATGACCTCATACACCTGCTGACCAGCTCCCAAGAGTACAGTCTCCAGGTGCAGCTGAAGGATGCTGAGGGGAACGAAGCTTACTCCCACTATAATCACTTCTACATAGACGCAGAGAACAAAAACTACAGTCTCCATGCCCAGGGGTTCAGTGGTACCGCCGGCCGCACCAGTAGTCTGACCCAGCCTGGGACCCAGTTCAGCACCAAGGACCGAGACAACGACCGCTGTTCCTGCAAGTGTGCCCAGATGTCTTCTGGAGGTTGGTGGTTTGAGGCTTGTGGTCCCTCCAACCTGAACGGTATCTACTACTCTGGCGTCTCCAACGTGGTCCGTTACAACGGCATCAAGTGGTACTACTGGAAAGGACCCAGCCTCATGACTACAGTGACCACCATGATGGTTCGACCCGCAGGCTTCTGAGGCATAACGGCGGCGATCGCCATTGACGTCACCCCGACTGACTGAATCACAGACTGATATGAGCACTTCTCGAATAATGATGTTTGCCAGACATGTGGAATATGATACTTGAGTGGAGGTTTTTAGAGGTTTTTAATTGACTGTGTTTGAAAAGAACAGATCTGTTATTTTCTGAAATGTATTCCGTCTTAAAAACATTTTCCCGCTGAAATGGCACACAGGCCAACGTAAATGTGTGTTTTATAATGGGATTGTACATATATTGTAGATGCATAATGGTATATTATGGCTTACTGCTACTCCACTTTCACTTTCAATGTCCAGAAAACTTTAACAGCTTCTTCCTGACTGTTTCCCGCTATGCCACTCAGAGATGCTTGTAAAACCCTTTTTTTTAAGGAGATGATTATCCTCATAAAAGTGCATGATAAATAAACACAGGTGTTTCTACAAGCATA

Function

NR:

description
PREDICTED: angiopoietin-2-like

GO:

id name namespace
GO:0001568 blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953649.1 False 1835 mRNA 0.54 9 70857223 70952130
XM_036953648.1 True 2270 mRNA 0.50 9 70857223 70952795

Neighbor

gene id symbol gene type direction distance location
acot13 acot13 coding upstream 79871 70774594 ~ 70777352 (+)
LOC118941216 NA coding upstream 93549 70760086 ~ 70763674 (+)
LOC110515400 tmem64 coding upstream 102792 70723470 ~ 70757121 (+)
LOC110504292 LOC106570754 coding upstream 307230 70499475 ~ 70549993 (+)
LOC110519153 runx1t1 coding upstream 471638 70192261 ~ 70385585 (+)
LOC118941014 NA coding downstream 105572 71058367 ~ 71059155 (+)
LOC118940973 NA coding downstream 255622 71208388 ~ 71209643 (+)
LOC118941017 NA coding downstream 991447 71944242 ~ 71946176 (+)
LOC118941219 LOC103143335 coding downstream 1940059 72892854 ~ 72909233 (+)
yars1 yars coding downstream 2053101 73005896 ~ 73016843 (+)
G1578927 LOC100194703 non-coding upstream 15070 70841920 ~ 70842153 (+)
G1578893 NA non-coding upstream 72303 70784182 ~ 70784920 (+)
G1578906 NA non-coding upstream 87145 70769627 ~ 70770078 (+)
G1578905 NA non-coding upstream 88253 70768696 ~ 70768970 (+)
G1578889 NA non-coding upstream 90861 70764799 ~ 70766362 (+)
G1579009 NA non-coding downstream 2201 70954996 ~ 70955342 (+)
G1578983 NA non-coding downstream 6632 70959427 ~ 70959835 (+)
G1579044 NA non-coding downstream 7424 70960219 ~ 70960469 (+)
G1579045 NA non-coding downstream 7900 70960695 ~ 70960940 (+)
G1579046 NA non-coding downstream 8468 70961263 ~ 70961543 (+)
G1578630 NA other upstream 437950 70418859 ~ 70419273 (+)
G1577699 NA other upstream 1092970 69762713 ~ 69764253 (+)
G1577567 NA other upstream 1240880 69615279 ~ 69616967 (+)
si:ch211-215i13.3 LOC106589127 other upstream 1482306 69360411 ~ 69374917 (+)
G1579579 NA other downstream 1185362 72138157 ~ 72138592 (+)
G1579615 NA other downstream 1274536 72227331 ~ 72227659 (+)
G1579986 NA other downstream 1309621 72262416 ~ 72263220 (+)
G1580222 NA other downstream 1643269 72596064 ~ 72596671 (+)
sync sync other downstream 2213416 73130799 ~ 73174920 (+)

Expression


Co-expression Network