XLOC_003435 (chia.2)


Basic Information

Item Value
gene id XLOC_003435
gene name chia.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24001993 ~ 24008739 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006712
tgttcagtccacttaaatttgtaaaaataattaatttaacttaattaatttgtgaaCCTTGCATTTTTACAGGGTATTTATTATCACCAAGTTTAAATTCTTTTAGTTTAGTACTTTagattaaagtaaatgaaaacaacaaatgttttatatattatatttcagcAAACATCTGTTTTATATGAAAATTTAGTttgattatttttgattatttttttatagttaacTACGGTAACCCTGATTTGACCTCAGGACTATACACATTTTTATGCAGAGGTTACAGGATCTTGTACTAAATTCATATCAGTGTACCAGACATTTTTTTTCATCTTATCAAAGATTTTAGTTTCACACTGTGGGCCAAAGGTATTTCAGTTCCACATGTTATTGTCCATTTTAAGTCCATAGTTTACAGTTGATACCATATCTCTGTCCTAATAAATCATTCCATATGGCCTAGAGACAACTCCCAATTGCTATAAAAACCCAAGGGTCCTAACGTTTCTCTTTACATTTTGCTTGCTTGAGGTACCCCAGGTATGTCTGACTGAAATTCAGCCTTCATTTGTATGCCTGCTATTAGTTTACATGTATTAACTATTCTTCGTTTCTCACAGAGAAACTGGAAATAATTATGGGGAGACTCACACTTGTAGCAGGTTTGGGCTTGGTGCTCTGCCACCTTGCCTTTTCCATGGAAATGGGCTGCTACTTCACCAACTGGTCCCAGTACAGGCCTGGGATTGGAAAGTACACTCCTGCAAATGTCGACCCTTTCCTTTGCACACATCTTTTCTATGCTTTCGCCATGATCAACCATGCCAATGAGCTTATCACATATGAGTGGAACGATGAGACTCTTTACAAGGCCTTCAATGAGCTCAAAAACACGAATCCCCATCTTAGAACTCTTTTGGCTGTTGGAGGATGGAACTTTGGTTCCACACAGTTCTCCATCATGGTGTCCAGTGCTGCAAACCGACAAACATTCATTCAGTCTTCCATCAAATTCTTGAGAACTTATGGATTCGATGGTATGGACTTGGACTGGGAATATCCTGGATCAAGAGGAAGTCCACCTGAAGACAAACAAAGATTCACTCTGCTGTGCAAGGAACTCCTTGAGGCCTATGAGGCTGAGGGCAAAGCCACTGGCAGACGCAGACTGATGCTGAGTGCTGCTGTATCTGCTGGCAAAGGCACTATTGATGATGGTTACGAGATTGCAGAGATTGCCAAATACCTGGACTTCATCAACATCATGACTTACGACTTCCATGGAACTTGGGAGCGATTCACAGGACACAACAGCCCTCTGTACCAAGGCTCAAAGGATGAGGGAGACCTTGTCTACTTCAACACCGACTATGCTATGCGCTACTGGAGGGATAATGGCACCCCGGTGGAGAAACTCAGAATGGGCTTTGCTACATACGGTCGCACTTTCCGTCTGACATCTTCAGATACCAGCGTTGGAGCTCCAGCTAGTGGACCTGCTTCAGCTGGAACCTACACTCGCGAGGCTGGATTCTGGTCTTACTATGAGATCTGTGGCTTCCTGGAGGGAACAACAGTCCAGTGGATTGATGACCAGAAGGTGCCCTATGCCACAAAGAACAGCGAGTGGGTTGGATTTGACACAAAGGAGAGTTATGAAACTAAGGTCCGTTATCTGAAAGACAAGAAATTTGGTGGAGCTTTCGTGTGGGCACTTGATCTGGATGACTTTGCTGGACAGTTCTGTGGTCAGGGGAACCATCCTCTCATGGGACACCTGCGCAATCTTCTGGATATTGaattGCCTCCTCTGCCTCCCCCCACAACTGCCAAACCTGGCCAAAGCACCACAAGACCCaccactaccaccaccaccactactcATGCTCCAGGGCCAGGATTCTGTAACGGGAAGCCCGATGGACTTTATGCTCACCCTGACCCCAACAAATATTACAGCTGCGCTGGAGGCCAGACATATGTGGATAATTGCGGAGCAGGCACTGAGTTTGATGAGAGCTGTAAGTGCTGTGGCTGGCCTAAACACTAAGTGAtcactgaaggcatctacatacaGTGAAATGGGACACTGCACATTTGAATAAGCACACACAAATGAATCTAAACATCTGCAACTACAGCTGTTTCATACAAAGGGAATTGCTGTAGACTGAACATAATTCTTTGTGCTTTATCTATCCActtgaatgtattttaaaagcatgcattgcttattttttgttgctatttttttaaaaatctgtcaaCGTGACTGGTGCTCAACAATGACTTCCcttcaaagcaaaaaacaaacaaaaaaaaaactcatatgaATAAACAAACCTTGCAACCACCAACTGTGTTTCTGattgcattgtattttttttaacacaacacATGATGGTAAAAAAATTGTGGTCTGGTAACATGCCAGATTTAACAGCCCGGTATTATTTGGGGCTCTTAAAATGAGTTTTATAGATTTTGTAATGGAAAACCCAACAATAATAATTCAGATATTCATATGAGATACTTACAATTATAAATATTAGTTAGTTAAGTTTTTTTGTGGAAATTTTGTTTGCTATAATGATTAggctaaaataattatttattataataatttttaagttTAAACTTAAATAGAAGTTATAAATTTCTGATAGATATTTTGGTAACTTTTCATAACAGAAACAGCATGATCAGATTACATGTAGCTGTCACAAATTCATAATCATGTTAATTAAGTGAAATCACAAACAAAAATGGAAACACAAGATAACACTACTGTGAGAAATGATCTGGAGACAGCCTTCATTGTAGACCTTCTTCTCTTCCCCCTACCCCAGTATGCATACCGTACTGTATGTTTTTAATGGTGTATAAACATTGACAATTTAGTGAACTGTGAGCTGATGTTGAATAGTTTTAATTTTGTGATtctatttatttaggcctatttattGATATAGTTTTTATGGTAAATTTAAGCAATCTTTAGGACATTTGTATTTTTAGAAGCCAACCAGGCAAATCACAAAAACTGTGATGATAGCTATTACTTTGTAACAGTAGCCTAAAAGTGTCTATAATAATATGACTGTGG
>TCONS_00006713
ACATTTTGCTTGCTTGAGGTACCCCAGAGAAACTGGAAATAATTATGGGGAGACTCACACTTGTAGCAGGTTTGGGCTTGGTGCTCTGCCACCTTGCCTTTTCCATGGAAATGGGCTGCTACTTCACCAACTGGTCCCAGTACAGGCCTGGGATTGGAAAGTACACTCCTGCAAATGTCGACCCTTTCCTTTGCACACATCTTTTCTATGCTTTCGCCATGATCAACCATGCCAATGAGCTTATCACATATGAGTGGAACGATGAGACTCTTTACAAGGCCTTCAATGAGCTCAAAAACACGAATCCCCATCTTAGAACTCTTTTGGCTGTTGGAGGATGGAACTTTGGTTCCACACAGTTCTCCATCATGGTGTCCAGTGCTGCAAACCGACAAACATTCATTCAGTCTTCCATCAAATTCTTGAGAACTTATGGATTCGATGGTATGGACTTGGACTGGGAATATCCTGGATCAAGAGGAAGTCCACCTGAAGACAAACAAAGATTCACTCTGCTGTGCAAGGAACTCCTTGAGGCCTATGAGGCTGAGGGCAAAGCCACTGGCAGACGCAGACTGATGCTGAGTGCTGCTGTATCTGCTGGCAAAGGCACTATTGATGATGGTTACGAGATTGCAGAGATTGCCAAATACCTGGACTTCATCAACATCATGACTTACGACTTCCATGGAACTTGGGAGCGATTCACAGGACACAACAGCCCTCTGTACCAAGGCTCAAAGGATGAGGGAGACCTTGTCTACTTCAACACCGACTATGCTATGCGCTACTGGAGGGATAATGGCACCCCGGTGGAGAAACTCAGAATGGGCTTTGCTACATACGGTCGCACTTTCCGTCTGACATCTTCAGATACCAGCGTTGGAGCTCCAGCTAGTGGACCTGCTTCAGCTGGAACCTACACTCGCGAGGCTGGATTCTGGTCTTACTATGAGATCTGTGGCTTCCTGGAGGGAACAACAGTCCAGTGGATTGATGACCAGAAGGTGCCCTATGCCACAAAGAACAGCGAGTGGGTTGGATTTGACACAAAGGAGAGTTATGAAACTAAGGTCCGTTATCTGAAAGACAAGAAATTTGGTGGAGCTTTCGTGTGGGCACTTGATCTGGATGACTTTGCTGGACAGTTCTGTGGTCAGGGGAACCATCCTCTCATGGGACACCTGCGCAATCTTCTGGATATTGaattGCCTCCTCTGCCTCCCCCCACAACTGCCAAACCTGGCCAAAGCACCACAAGACCCaccactaccaccaccaccactactcATGCTCCAGGGCCAGGATTCTGTAACGGGAAGCCCGATGGACTTTATGCTCACCCTGACCCCAACAAATATTACAGCTGCGCTGGAGGCCAGACATATGTGGATAATTGCGGAGCAGGCACTGAGTTTGATGAGAGCTGTAAGTGCTGTGGCTGGCCTAAACACTAAGTGAtcactgaaggcatctacatacaGTGAAATGGGACACTGCACATTTGAATAAGCACACACAAATGAATCTAAACATCTGCAACTACAGCTGTTTCATACAAAGGGAATTGCTGTAGACTGAACATAATTCTTTGTGCTTTATCTATCCActtgaatgtattttaaaagcatgcattgcttattttttgttgctatttttttaaaaatctgtcaaCGTGACTGGTGCTCAACAATGACTTCCcttcaaagcaaaaaacaaacaaaaaaaaaactcatatgaATAAACAAACCTTGCAACCACC

Function

symbol description
chia.2 Predicted to enable chitin binding activity and chitinase activity. Predicted to be involved in chitin catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in extracellular region. Is expressed in gut and liver. Human ortholog(s) of this gene implicated in asthma and schizophrenia. Orthologous to several human genes including CHIT1 (chitinase 1); CHIA (chitinase acidic); and OVGP1 (oviductal glycoprotein 1).

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0004568 chitinase activity molecular_function
GO:0008061 chitin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2014 Predicted to enable chitin binding activity and chitinase activity. Predicted to be involved in chitin catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in extracellular region. Is expressed in gut and liver. Human ortholog(s) of this gene implicated in asthma and schizophrenia. Orthologous to several human genes including CHIT1 (chitinase 1); CHIA (chitinase acidic); and OVGP1 (oviductal glycoprotein 1).

Ensembl:

ensembl_id ENSDARG00000099185

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006712 False 3103 mRNA 0.39 11 24001993 24008739
TCONS_00006713 True 1762 mRNA 0.47 12 24002503 24007988

Neighbor

gene id symbol gene type direction distance location
XLOC_003434 chia.1 coding upstream 1822 23993298 ~ 24000171 (+)
XLOC_003433 cntn2 coding upstream 14311 23933016 ~ 23987682 (+)
XLOC_003432 NA coding upstream 88494 23895529 ~ 23913499 (+)
XLOC_003431 nfasca coding upstream 117188 23704410 ~ 23884805 (+)
XLOC_003430 NA coding upstream 404322 23594349 ~ 23597671 (+)
XLOC_003436 NA coding downstream 7096 24015835 ~ 24024576 (+)
XLOC_003437 ovgp1 coding downstream 18976 24027715 ~ 24032190 (+)
XLOC_003438 zc3h11a coding downstream 25606 24034345 ~ 24044586 (+)
XLOC_003439 maf1 coding downstream 37440 24046179 ~ 24056609 (+)
XLOC_003440 NA coding downstream 52417 24061156 ~ 24083588 (+)
XLOC_003369 CR854846.2 misc upstream 7878911 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 11289997 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 11307730 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 11316394 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 11321965 12679732 ~ 12680028 (+)
XLOC_003428 BX571675.1 non-coding upstream 604608 23397270 ~ 23397385 (+)
XLOC_003426 NA non-coding upstream 1074805 22920469 ~ 22927188 (+)
XLOC_003425 CU861893.1 non-coding upstream 1287862 22714015 ~ 22714131 (+)
XLOC_003441 FP102969.1 non-coding downstream 107344 24116083 ~ 24151217 (+)
XLOC_003442 NA non-coding downstream 111552 24120291 ~ 24310645 (+)
XLOC_003443 NA non-coding downstream 167679 24176418 ~ 24177651 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_01453383_01456154 CHIA.2 coding CI01000058 null 1453084 ~ 1456284 (-)
bowfin (Amia calva) AMCG00013931 NA coding CM030125.1 CM030125.1 47244382 ~ 47274829 (-)