csmd1a (csmd2)


Basic Information

Item Value
gene id csmd1a
gene name csmd2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 72015921 ~ 72236753 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953651.1
AATGTACCGCTTTGGGAAGGCAGCGATAGCCTAGTCTACTGGAAATAAACTATCTATTCATTTCTCACATCATCAAAATGATTCTGAATATTTTGTGGGTGGGCAACTTTTGAAAAGGAACAGTTTTGGTGGATTTGGACAACCTATAGTCTTATCCGTTATTCTACGGCGTTCCTGCGTTCAACGGACCTGTTAAATGTGGATTATCGACATTGGTGATGATACCTCTTGTTAACTGGGAATAGATAAGAAGCCCATCAACACCAGTACTTGTCCCGTAGGGAAAAAGGCAAAAGAAAGGGATCTCTCGCTTTTACTCATCCTCTCGAATCGAATCTAACATTTTGAGTAGAAGAGGGATTTGTGTGATTGTTTCTCGTGGTGGATAAGGCACCACTTTTTCCTTCGTCTGGCCTGAGTGGCTttttatctcctcctcctcagtgtgAGGATCCTTCTCCGGAGAGATTCTGCTAACCCCGCGGTCCGCATGACATGGTTCAGTCCTGTTGCCGGTGCCGAGCCTCGATGCATTGGGATTTCTCTCAGTGccgacaccaccaccaccaagtgAATCTTATTTCTAAACCAGTCTAATAAAACGTGCCTGCTGCCCccgaaaaaaaacacacacctgCCATGACCGCCTCTTCGAACTGGGACGGAACCGGACACATTACCGGGCATGTTCGTAGGACAGAATGCAGATGTATTAGCAGGCATACCAGGACCGGGCCAAGGAAAGCGGAGGGAATAGGGATTTTTGCGTTAATGAAGGCAGGAGTAGCAGCGCACCATTGGAACCGGGTTCTGTTCTTGTTTATGGGGCTACTggcagcctcagcctcagcctcagcctcggTTAAGGGTACTAAGGCTCAGAACTGCAGTTATTCTCTCCAGAGCCCCAACGGTACGATAGAGAGCCCTGGCTACCCGTACGGTTACCCCAACTATGCCAACTGTACGTGGGTGATCCTGGCAGCAGAACACAACAGGATACAGCTGGTGTTCCAAGGTTTCGCTCTAGAGGAAGACTTTGACATGCTGTCTGTCTACGACGGTCCGCCCAGCCCGGGGAACCTTAGGACCAGATTGACAGGGTTCCAGCTGCCCTCGCCCATAGTGAGCACAGGACCCAGGCTAACACTGTGGCTGCTGTCAGACTATGCTGTCAGTGGACAAGGCTTCAAGGCCATCTATGAAGctctACCCAGTTATACCTGTGGTAACCCAGGCCAGCTGGTCAACGGTCTTCAACAGGGCTCAACCTTTAACATTGGAGAGAAGATCAGGTACAGCTGCAGCCCGGGCTACGTGTTGGAGGGTCACACCGCGCTGTCCTGTCTGGCTACGTCTGCTGGGACCGCAGCATGGGACTTCCCCCTGCCCTACTGCAGAGCGGATGACGGTTGTGGGGGAACGTTACGAGGCCAGAGCGGTGTGATCACCAGCCCCAACTTCCCAGGGGAGTACAGCAACAATGCAGACTGTACCTGGACCGTCCTGGCTGAGCCTGGAGACACCATCGCCCTGGTCTTCTCTGACTTTACACTGGAGGACGACTATGACCTGCTGGAGGTCAGCGGCACAGACGGATCCTCTCAGTGGTGAGTACCCAGCCGGGGTGCTTCCATGTGGGGGAGGGATTGGGATGGGGTGGCGTATGATGGTTTA

Function

symbol description
csmd2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CSMD2 (CUB and Sushi multiple domains 2).

NR:

description
PREDICTED: CUB and sushi domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953651.1 True 1677 mRNA 0.52 5 72015921 72236753

Neighbor

gene id symbol gene type direction distance location
LOC118941016 NA coding downstream 71678 71943228 ~ 71944243 (-)
LOC118941015 LOC103363662 coding downstream 141251 71847433 ~ 71874670 (-)
LOC118941218 LOC106589160 coding downstream 194809 71804321 ~ 71821112 (-)
LOC110518582 csmd2 coding downstream 236380 71321529 ~ 71779541 (-)
LOC110496779 LOC106589151 coding downstream 1226250 70776718 ~ 70789671 (-)
LOC110496752 LOC106589094 coding upstream 782043 73006005 ~ 73131439 (-)
LOC118941220 NA coding upstream 842651 73079404 ~ 73081896 (-)
LOC110517586 LOC106589098 coding upstream 1067618 73304371 ~ 73363731 (-)
LOC110496760 NA coding upstream 1152008 73388761 ~ 73393698 (-)
LOC110496758 LOC106530873 coding upstream 1196962 73433715 ~ 73445162 (-)
G1579854 NA non-coding downstream 6122 72006723 ~ 72009799 (-)
G1579831 NA non-coding downstream 78163 71936480 ~ 71937758 (-)
G1579830 NA non-coding downstream 80264 71935452 ~ 71935657 (-)
G1579827 NA non-coding downstream 87133 71928312 ~ 71928788 (-)
G1579811 NA non-coding downstream 124113 71891064 ~ 71891808 (-)
G1579979 NA non-coding upstream 17196 72253949 ~ 72254154 (-)
G1579982 LOC106613263 non-coding upstream 21863 72258616 ~ 72258841 (-)
G1579987 NA non-coding upstream 26016 72262769 ~ 72263093 (-)
G1579989 NA non-coding upstream 31614 72268367 ~ 72268587 (-)
G1580004 NA non-coding upstream 46846 72283599 ~ 72284055 (-)
G1579715 NA other downstream 377789 71636487 ~ 71638132 (-)
G1579672 NA other downstream 497452 71517869 ~ 71518469 (-)
G1579220 NA other downstream 772828 71242691 ~ 71243093 (-)
G1579147 NA other downstream 861644 71153837 ~ 71154277 (-)
G1580625 NA other upstream 811080 73047833 ~ 73048686 (-)
G1580844 NA other upstream 1288529 73525282 ~ 73525595 (-)
LOC110496905 LOC106593151 other upstream 1587278 73822008 ~ 74115567 (-)
G1581344 LOC106589111 other upstream 1920552 74157305 ~ 74157747 (-)

Expression


Co-expression Network