LOC118941219 (LOC103143335)


Basic Information

Item Value
gene id LOC118941219
gene name LOC103143335
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 72892854 ~ 72909233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953654.1
CTCTGCTTCCTTCCAATCTGTCAGAGCCGACAACCACATAGTGAGCTTCTCGTCTTTGCATTAAAAACACATCTATTTGACCCATTCGTCTGTTCCTCTCAACCAGTGACTGGTTGTCGCCCCCCCacatccctccacctcttcctcctcctcctcctcctcctcttccaagATGAACTGGGGTGGGCTGCAGTCCCTCCTCAGCGGGGTGAATAAATACTCCACAGTGTTCGGACGCGTCTGGCTCTCCATGGTCTTCGTGTTCCGCTTCTTGGTGTTTGTGGTGGCCGCTCAGCGCGTCTGGGTAGACGAGAGTAAGGACTTTGTCTGTAACACGGCCCAGCCAGGCTGCGTCAACGTCTGCTACGACCACATCTTCCCCATCTCACACATCCGCCTGTGGGCCCTGCAGCTCATCTTCGTCACCTGTCCATCTCTGATGGTTGTGGCGCACGTCACGTTGCGTGAGGAGAAGGATTCCAAGTACTCCGCAATGCATGAAGGGTCGCATTTGTACGCTAAtccagggaagaagagaggaggcctGTGGTGGACCTATCTGGCGAGTCTGATCTTCAAGGCGGGCTTCGACGCCGGCTTCCTCTACATCCTCTTCTACGTCTACGAGGGATATGACATGCCTCGTCTCTCCAAGTGCTCCCTGGAGCCCTGCCCCAACACCGTCGACTGCTACATCTCCCGTCCCACCGAGAAGAAGATTTTCACCATCTTCATGGTGGTCTCCTCAGCCGTCTGCATCCTCATTTGTATCTGTGAGATGGTCTACCTCATCTACAAGAGGATCCAGAAGCTCGTCAGGAAGAAGGTGGTAGAGAGTCATGAGACGACGTCGTTGACGGCGCGGAGGTCGAGATCCAAGTCTACGAGATCCAAGTTGTCTGTCAGGGAGGACCCCACCAACACAGCCTCCATTCAGAACCTCAGTAATGTCATGACGGAGGCGGCGCCGTCAGAGAAGAAGAAATAATAGGTCACATGACGCAGTGAAgctggaatgggggggggggggggtaaaatggGAGTGGGAGGAGTTTGACCGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAGGTCAGGAGATAGCATATGTCGTAGGGTGGACTATAAGGTCTAAAATCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGACTATAAGGTCTAAAGTCAGGAGATAGCATATGTCGTAGGGTGGACTATAAGGTCTAAAGTCAGGAGATAGCATATGTTGTAGGGTGGATTATAAAGTCAGGAGATAGCATATGTCGTAGGGTGGACTATAAGGTCTAAAGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGACTATAAGGTCTAAAGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGACTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCAGGAGATAGCATATGTCGTAGGGTGGACTATAACAGAATTGTCACTGAACTATGCATGCTTTCACTAATGATTGACATTCacttttattgaacctttatttaactaggcaagtcagttaaaggacaaattcgtatttacaatgacagcctaccagaaggaaaaaggcctcctgcgggtgcgggggctgggatta
>XR_005037549.1
CTCTGCTTCCTTCCAATCTGTCAGAGCCGACAACCACATAGTGAGCTTCTCGTCTTTGCATTAAAAACACATCTATTTGACCCATTCGTCTGTTCCTCTCAACCAGTGACTGGTTGTCGCCCCCCCacatccctccacctcttcctcctcctcctcctcctcctcttccaagATGAACTGGGGTGGGCTGCAGTCCCTCCTCAGCGGGGTGAATAAATACTCCACAGTGTTCGGACGCGTCTGGCTCTCCATGGTCTTCGTGTTCCGCTTCTTGGTGTTTGTGGTGGCCGCTCAGCGCGTCTGGGTAGACGAGAGTAAGGACTTTGTCTGTAACACGGCCCAGCCAGGCTGCGTCAACGTCTGCTACGACCACATCTTCCCCATCTCACACATCCGCCTGTGGGCCCTGCAGCTCATCTTCGTCACCTGTCCATCTCTGATGGTTGTGGCGCACGTCACGTTGCGTGAGGAGAAGGATTCCAAGTACTCCGCAATGCATGAAGGGTCGCATTTGTACGCTAAtccagggaagaagagaggaggcctGTGGTGGACCTATCTGGCGAGTCTGATCTTCAAGGCGGGCTTCGACGCCGGCTTCCTCTACATCCTCTTCTACGTCTACGAGGGATATGACATGCCTCGTCTCTCCAAGTGCTCCCTGGAGCCCTGCCCCAACACCGTCGACTGCTACATCTCCCGTCCCACCGAGAAGAAGATTTTCACCATCTTCATGGTGGTCTCCTCAGCCGTCTGCATCCTCATTTGTATCTGTGAGATGGTCTACCTCATCTACAAGAGGATCCAGAAGCTCGTCAGGAAGAAGGTGGTAGAGAGTCATGAGACGACGTCGTTGACGGCGCGGAGGTCGAGATCCAAGTCTACGAGATCCAAGTTGTCTGTCAGGGAGGACCCCACCAACACAGCCTCCATTCAGAACCTCAGTAATGTCATGACGGAGGCGGCGCCGTCAGAGAAGAAGAAATAATAGGTCACATGACGCAGTGAAgctggaatgggggggggggggggtaaaatggGAGTGGGAGGAGTTTGACCGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAGGTCAGGAGATAGCATATGTCGTAGGGTGGACTATAAGGTCTAAAATCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGACTATAAGGTCTAAAGTCAGGAGATAGCATATGTCGTAGGGTGGACTATAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGACTATAAGGTCTAAAGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGACTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCTAAGGTCAGGAGATAGCATATGTCGTAGGGTGGATTATAAAGTCAGGAGATAGCATATGTCGTAGGGTGGACTATAACAGAATTGTCACTGAACTATGCATGCTTTCACTAATGATTGACATTCacttttattgaacctttatttaactaggcaagtcagttaaaggacaaattcgtatttacaatgacagcctaccagaaggaaaaaggcctcctgcgggtgcgggggctgggatta

Function

NR:

description
gap junction beta-4 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953654.1 False 2122 mRNA 0.48 3 72892854 72909233
XR_005037549.1 True 1990 mRNA 0.49 4 72892854 72909233

Neighbor

gene id symbol gene type direction distance location
LOC118941017 NA coding upstream 946678 71944242 ~ 71946176 (+)
LOC118940973 NA coding upstream 1683211 71208388 ~ 71209643 (+)
LOC118941014 NA coding upstream 1833699 71058367 ~ 71059155 (+)
LOC110515436 LOC106570762 coding upstream 1940059 70857223 ~ 70952795 (+)
acot13 acot13 coding upstream 2115502 70774594 ~ 70777352 (+)
yars1 yars coding downstream 96663 73005896 ~ 73016843 (+)
sync sync coding downstream 221566 73130799 ~ 73174920 (+)
LOC110496903 LOC106570720 coding downstream 292566 73201799 ~ 73281251 (+)
LOC110496759 nupl2 coding downstream 487212 73396445 ~ 73418514 (+)
LOC110496757 LOC102790862 coding downstream 624116 73533349 ~ 73721653 (+)
G1580372 NA non-coding upstream 72519 72819953 ~ 72820335 (+)
G1580353 NA non-coding upstream 87791 72782829 ~ 72805063 (+)
G1580344 NA non-coding upstream 116352 72776000 ~ 72776502 (+)
G1580341 NA non-coding upstream 118608 72773945 ~ 72774246 (+)
G1580335 NA non-coding upstream 131178 72760907 ~ 72761676 (+)
G1580462 NA non-coding downstream 4886 72914119 ~ 72914330 (+)
G1580465 NA non-coding downstream 5977 72915210 ~ 72915456 (+)
G1580477 NA non-coding downstream 48431 72957664 ~ 73004081 (+)
G1580479 NA non-coding downstream 54519 72963752 ~ 72973842 (+)
G1580527 NA non-coding downstream 252400 73161633 ~ 73161852 (+)
G1580222 NA other upstream 296183 72596064 ~ 72596671 (+)
G1579986 NA other upstream 629634 72262416 ~ 72263220 (+)
G1579615 NA other upstream 665195 72227331 ~ 72227659 (+)
G1579579 NA other upstream 754262 72138157 ~ 72138592 (+)
G1578630 NA other upstream 2473581 70418859 ~ 70419273 (+)
G1580586 NA other downstream 434064 73343297 ~ 73343837 (+)
G1580898 NA other downstream 687577 73596810 ~ 73598547 (+)
LOC110496761 LOC106589111 other downstream 1247985 74147399 ~ 74159321 (+)

Expression


Co-expression Network