LOC118941220


Basic Information

Item Value
gene id LOC118941220
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 73079404 ~ 73081896 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037550.1
CACCTGGACAGTAGACCCCTGTAGGGGGGCGAGGATTACCCTGGATTGCATCACCATGGGGAACAACGTCCACAAGAACAAGAAGAGGTTCCCTGCAGCTCGGAACGGATCCTCTTCACGACCCAAAGGTTCTATACCTGGTCCtaaccccagccccaacccccGCTCAGGCTCTAAACATGGTGCTACCCCCTTCCCCAACCCGGGGAAGACCAAAGCCTTCTGGCACTTTGGGTGGGTGGATAAACTGAAAACAGGTAGGATCCGAGCTGGATGATCAGAGGGAATGTTATGTATGGGATTGTGTTTTCTTGTTTTTCGATTTTAATTGATTTCAGCAGTCTGTGATGTCACAGGCATGATGTCATCTGTGTTCTAGATATTTCTAGAGATAGTTCTGTCCCTCTGTGCAATGATCATTGCTTGTCTTTGGTTGCGGTGACGATGATGTCATAACATGAAGACGTGCTGCCTTGGAGAGCTTATTGTTTACAATATGAGGTAGTGGAAGAATCGACAGTGACGGCAGAGTGTGCTGTCTGTGTAAAGACTCCAGGTGTTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGGTGTTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGgtgttgtgtggtagtggAAGAATCGACAGCAACGGGAGAGTGTACTGTCTGTGTAAAGACTccaggtgttgtgtggtagtggAAGAATCGACAGCGACGGCAGAGTGTACTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTACTGTCTGTGTAAAGACTGCAGATATTGTCCTGATAGTGTACTGTCTGTGTAAAGACTCCAGGTGTTGTACTGAGAGTGTACTGTCTGTGTAAAGACTCCAGGTGTTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGGTGTTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGGTGTTGTACTGATAGTGTACTGTCTGTGTAAAGACTccagATATTGTACCGATAGTGTGCTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGGTGTTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTGCTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTGCTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTGCTGTCTTTGTAAAGACTCCAGATATTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTGCTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGATATTGTACTGATACTGTGCTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTGCTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTGCTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTGCTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTGCTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGATGTTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTACTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTGCTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTGCTGTCTGTGTAAAGACTCCAGATATTGTACTGATAGTGTACTGTCTTATCCCTTTCATACGTTTTCCAGCCAACTCATTTCCTCCTTGTCTTTAATATCTGAACGGTATTGCTGGTATCAAAGCCTAAACTTGTATTTCTGCCCAAGGCCCTAGTAAAGATTTTGGTCAAGCTCTTTAAACTTTTGATTGTTGCTAGGCAATGTCAGTTTGCCATCCTCCTGCCAGTTGTAACCTTAGTCCGTGTGACTTCGCCCGTC

Function

NR:

description
uncharacterized protein LOC110519242

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037550.1 True 2323 mRNA 0.43 3 73079404 73081896

Neighbor

gene id symbol gene type direction distance location
csmd1a csmd2 coding downstream 842651 72015921 ~ 72236753 (-)
LOC118941016 NA coding downstream 1135161 71943228 ~ 71944243 (-)
LOC118941015 LOC103363662 coding downstream 1204734 71847433 ~ 71874670 (-)
LOC118941218 LOC106589160 coding downstream 1258292 71804321 ~ 71821112 (-)
LOC110518582 csmd2 coding downstream 1299863 71321529 ~ 71779541 (-)
LOC110517586 LOC106589098 coding upstream 222475 73304371 ~ 73363731 (-)
LOC110496760 NA coding upstream 306865 73388761 ~ 73393698 (-)
LOC110496758 LOC106530873 coding upstream 351819 73433715 ~ 73445162 (-)
LOC110489356 LOC106589108 coding upstream 673468 73755364 ~ 73763523 (-)
LOC110496905 LOC106593151 coding upstream 740112 73822008 ~ 74115567 (-)
G1580636 NA non-coding downstream 898 73071429 ~ 73078506 (-)
G1580634 NA non-coding downstream 3746 73068668 ~ 73075658 (-)
G1580633 NA non-coding downstream 4498 73067813 ~ 73074906 (-)
LOC110496752 LOC106589094 non-coding downstream 59197 73006005 ~ 73131439 (-)
G1580605 NA non-coding downstream 75258 72962035 ~ 73004146 (-)
G1580653 sync non-coding upstream 86297 73168193 ~ 73171139 (-)
G1580658 NA non-coding upstream 95449 73177345 ~ 73177946 (-)
G1580661 NA non-coding upstream 101718 73183614 ~ 73183815 (-)
G1580665 NA non-coding upstream 109070 73190966 ~ 73191282 (-)
G1580669 NA non-coding upstream 119865 73201761 ~ 73201981 (-)
G1580625 NA other downstream 30718 73047833 ~ 73048686 (-)
G1579954 NA other downstream 864615 72214174 ~ 72214789 (-)
G1579715 NA other downstream 1441272 71636487 ~ 71638132 (-)
G1579672 NA other downstream 1560935 71517869 ~ 71518469 (-)
G1580844 NA other upstream 443386 73525282 ~ 73525595 (-)
G1581344 LOC106589111 other upstream 1075409 74157305 ~ 74157747 (-)
G1581465 NA other upstream 1224882 74306778 ~ 74307678 (-)
G1581622 NA other upstream 1364700 74446596 ~ 74446989 (-)

Expression


Co-expression Network